Experiment set6IT035 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

L-Glutamic acid monopotassium salt monohydrate carbon source

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_02008 +2.7 20.9 phosphocarrier protein compare
H281DRAFT_02007 +1.9 17.0 phosphoenolpyruvate--protein phosphotransferase compare
H281DRAFT_01632 +1.6 13.4 LuxR family transcriptional regulator, quorum-sensing transcription factor LasR compare
H281DRAFT_05667 +1.6 11.8 serine protease DegQ compare
H281DRAFT_01633 +1.5 3.6 hypothetical protein compare
H281DRAFT_06056 +1.3 9.5 histidine kinase (EC 2.7.13.3) compare
H281DRAFT_02404 +1.2 10.8 L-proline dehydrogenase /delta-1-pyrroline-5-carboxylate dehydrogenase compare
H281DRAFT_00819 +1.1 2.7 competence protein ComEA compare
H281DRAFT_05974 +1.0 2.7 carbon-monoxide dehydrogenase medium subunit compare
H281DRAFT_01927 +1.0 9.1 RNA polymerase, sigma 54 subunit, RpoN/SigL compare
H281DRAFT_04369 +0.9 3.5 Uncharacterized conserved protein YjbJ, UPF0337 family compare
H281DRAFT_05952 +0.9 2.3 transcriptional regulator, LysR family compare
H281DRAFT_05759 +0.9 1.9 flagella synthesis protein FlgN compare
H281DRAFT_04368 +0.9 6.6 two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family compare
H281DRAFT_01262 +0.8 2.3 putative spermidine/putrescine transport system permease protein compare
H281DRAFT_01095 +0.8 1.9 Glyoxylase, beta-lactamase superfamily II compare
H281DRAFT_04002 +0.8 2.0 tRNA_Arg_ACG compare
H281DRAFT_01321 +0.8 2.0 probable H4MPT-linked C1 transfer pathway protein compare
H281DRAFT_00316 +0.8 5.1 ADP-heptose:LPS heptosyltransferase compare
H281DRAFT_04880 +0.8 1.7 PRC-barrel domain-containing protein compare
H281DRAFT_06375 +0.8 2.2 hypothetical protein compare
H281DRAFT_05041 +0.8 1.8 RNA polymerase sigma-70 factor, ECF subfamily compare
H281DRAFT_05210 +0.8 1.9 Sugar phosphate isomerase/epimerase compare
H281DRAFT_03297 +0.8 2.0 ADP-ribose pyrophosphatase YjhB, NUDIX family compare
H281DRAFT_02611 +0.8 2.5 transcriptional regulator, RpiR family compare
H281DRAFT_04179 +0.8 5.6 two-component system, OmpR family, sensor kinase compare
H281DRAFT_01584 +0.7 1.6 enamidase compare
H281DRAFT_06276 +0.7 3.8 hypothetical protein compare
H281DRAFT_06507 +0.7 3.3 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_00240 +0.7 5.0 two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family compare
H281DRAFT_02614 +0.7 1.6 L-glutamine ABC transporter membrane protein compare
H281DRAFT_05537 +0.7 1.4 transcriptional regulator, IclR family compare
H281DRAFT_04878 +0.7 2.3 transcriptional regulator, ArsR family compare
H281DRAFT_03108 +0.7 1.8 hypothetical protein compare
H281DRAFT_03525 +0.7 3.2 cold-shock DNA-binding protein family compare
H281DRAFT_03118 +0.7 1.9 NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase compare
H281DRAFT_00695 +0.7 3.1 choline-sulfatase compare
H281DRAFT_00540 +0.7 1.5 tRNA/rRNA methyltransferase compare
H281DRAFT_03278 +0.7 1.5 Threonine dehydrogenase compare
H281DRAFT_03296 +0.7 1.9 hypothetical protein compare
H281DRAFT_05962 +0.7 1.6 RraA famliy compare
H281DRAFT_04802 +0.7 3.7 negative transcriptional regulator, PaiB family compare
H281DRAFT_06474 +0.7 2.2 amino acid ABC transporter membrane protein 1, PAAT family compare
H281DRAFT_06547 +0.7 2.3 RNA polymerase sigma-70 factor, ECF subfamily compare
H281DRAFT_05462 +0.7 3.8 hypothetical protein compare
H281DRAFT_01486 +0.6 1.9 hypothetical protein compare
H281DRAFT_02556 +0.6 2.5 Outer membrane protein (porin) compare
H281DRAFT_03154 +0.6 1.8 two-component system, NarL family, sensor kinase compare
H281DRAFT_05399 +0.6 0.9 isoquinoline 1-oxidoreductase, alpha subunit compare
H281DRAFT_01052 +0.6 1.8 hypothetical protein compare
H281DRAFT_01413 +0.6 1.4 hypothetical protein compare
H281DRAFT_03572 +0.6 1.8 Crotonobetainyl-CoA:carnitine CoA-transferase CaiB compare
H281DRAFT_01595 +0.6 1.6 3-carboxy-cis,cis-muconate cycloisomerase compare
H281DRAFT_02170 +0.6 1.9 Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family compare
H281DRAFT_00375 +0.6 0.8 benzoyl-CoA oxygenase, component A compare
H281DRAFT_01028 +0.6 1.2 peptide/nickel transport system permease protein compare
H281DRAFT_02573 +0.6 2.5 amino acid ABC transporter ATP-binding protein, PAAT family compare
H281DRAFT_00254 +0.6 4.7 DNA (cytosine-5)-methyltransferase 1 compare
H281DRAFT_00852 +0.6 3.2 acetyl-CoA acetyltransferase compare
H281DRAFT_02653 +0.6 2.5 transcriptional regulator, LysR family compare
H281DRAFT_06494 +0.6 2.1 transcriptional regulator, IclR family compare
H281DRAFT_05535 +0.6 2.4 YD repeat-containing protein compare
H281DRAFT_03644 +0.6 1.4 betaine-aldehyde dehydrogenase compare
H281DRAFT_06120 +0.6 1.3 hypothetical protein compare
H281DRAFT_05251 +0.6 2.8 Type IV secretory pathway, VirJ component compare
H281DRAFT_05861 +0.6 3.0 16S rRNA. Bacterial SSU compare
H281DRAFT_05807 +0.6 4.9 hypothetical protein compare
H281DRAFT_01981 +0.6 3.2 transcriptional regulator, MarR family with acetyltransferase activity compare
H281DRAFT_00317 +0.6 3.7 O-antigen ligase compare
H281DRAFT_03324 +0.6 1.3 Low affinity Fe/Cu permease compare
H281DRAFT_04968 +0.6 2.2 Hemin uptake protein hemP compare
H281DRAFT_06017 +0.6 1.1 Exodeoxyribonuclease VII small subunit compare
H281DRAFT_02971 +0.6 2.2 Protein of unknown function (DUF3225) compare
H281DRAFT_06365 +0.6 2.0 pilus assembly protein CpaC compare
H281DRAFT_03847 +0.6 2.3 transcriptional regulator, LysR family compare
H281DRAFT_01088 +0.6 1.3 Lactate dehydrogenase compare
H281DRAFT_02532 +0.6 0.7 Sugar phosphate isomerase/epimerase compare
H281DRAFT_01587 +0.5 2.2 amino acid/amide ABC transporter membrane protein 1, HAAT family /amino acid/amide ABC transporter membrane protein 2, HAAT family compare
H281DRAFT_03061 +0.5 2.0 hypothetical protein compare
H281DRAFT_00966 +0.5 1.0 uroporphyrinogen-III C-methyltransferase (EC 2.1.1.107) compare
H281DRAFT_02634 +0.5 3.1 Beta-galactosidase compare
H281DRAFT_00236 +0.5 3.5 sigma54 specific transcriptional regulator, Fis family compare
H281DRAFT_03087 +0.5 2.7 hypothetical protein compare
H281DRAFT_00690 +0.5 1.5 NADPH:quinone reductase compare
H281DRAFT_02931 +0.5 3.8 Uncharacterized conserved protein YodC, DUF2158 family compare
H281DRAFT_03117 +0.5 1.5 sarcosine oxidase subunit beta compare
H281DRAFT_00996 +0.5 1.6 ChrR Cupin-like domain-containing protein compare
H281DRAFT_01383 +0.5 2.9 chromosome partitioning protein compare
H281DRAFT_03723 +0.5 1.4 transcriptional regulator, AraC family with amidase-like domain compare
H281DRAFT_06340 +0.5 2.1 Predicted N-acetyltransferase YhbS compare
H281DRAFT_03820 +0.5 1.1 methylated-DNA-[protein]-cysteine S-methyltransferase compare
H281DRAFT_04735 +0.5 1.1 Membrane-anchored ribosome-binding protein, inhibits growth in stationary phase, ElaB/YqjD/DUF883 family compare
H281DRAFT_04706 +0.5 3.3 poly(A) polymerase compare
H281DRAFT_06170 +0.5 1.3 hypothetical protein compare
H281DRAFT_05248 +0.5 1.5 hypothetical protein compare
H281DRAFT_01377 +0.5 1.2 hypothetical protein compare
H281DRAFT_06003 +0.5 2.0 Pimeloyl-ACP methyl ester carboxylesterase compare
H281DRAFT_00896 +0.5 1.7 ATP-dependent Clp protease proteolytic subunit ClpP compare
H281DRAFT_02849 +0.5 2.7 Pimeloyl-ACP methyl ester carboxylesterase compare
H281DRAFT_06523 +0.5 2.9 protoporphyrin IX magnesium-chelatase (EC 6.6.1.1) compare
H281DRAFT_05419 +0.5 1.9 hypothetical protein compare
H281DRAFT_06046 +0.5 1.1 serine/threonine protein phosphatase 1 compare
H281DRAFT_06078 +0.5 1.8 protein of unknown function (DUF4148) compare
H281DRAFT_04984 +0.5 2.1 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) compare
H281DRAFT_05981 +0.5 1.6 transcriptional regulator, LysR family compare
H281DRAFT_04544 +0.5 1.5 diacylglycerol kinase (ATP) compare
H281DRAFT_04031 +0.5 3.1 Predicted oxidoreductase, contains short-chain dehydrogenase (SDR) and DUF2520 domains compare
H281DRAFT_00378 +0.5 1.9 glutamate synthase (NADPH/NADH) small chain compare
H281DRAFT_04768 +0.5 1.5 colanic acid biosynthesis protein WcaH compare
H281DRAFT_01654 +0.5 1.5 3-phenylpropionate/cinnamic acid dioxygenase, small subunit compare
H281DRAFT_00861 +0.5 2.9 hypothetical protein compare
H281DRAFT_05345 +0.5 1.5 Fur family transcriptional regulator, zinc uptake regulator compare
H281DRAFT_03413 +0.5 3.3 high affinity sulphate transporter 1 compare
H281DRAFT_04905 +0.5 2.5 outer membrane transport energization protein ExbB compare
H281DRAFT_04858 +0.5 1.2 hypothetical protein compare
H281DRAFT_03981 +0.5 2.6 Uncharacterized membrane protein compare
H281DRAFT_05476 +0.5 1.0 Short-chain dehydrogenase compare
H281DRAFT_01522 +0.5 1.4 amino acid ABC transporter substrate-binding protein, PAAT family compare
H281DRAFT_03460 +0.5 1.0 Protein of unknown function (DUF2950) compare
H281DRAFT_00722 +0.5 1.1 transcriptional regulator, Crp/Fnr family compare
H281DRAFT_02351 +0.5 3.1 general secretion pathway protein H compare
H281DRAFT_05315 +0.5 1.0 5-dehydro-4-deoxy-D-glucarate aldolase (EC 4.1.2.20) compare
H281DRAFT_05625 +0.5 1.4 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ compare
H281DRAFT_03080 +0.5 0.9 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_01011 +0.5 1.3 Uncharacterized membrane protein YkgB compare
H281DRAFT_02592 +0.5 2.1 fumarase, class II compare
H281DRAFT_00315 +0.5 2.8 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_05633 +0.5 1.9 hypothetical protein compare
H281DRAFT_05049 +0.5 2.3 hypothetical protein compare
H281DRAFT_02479 +0.5 1.0 transcriptional regulator, LysR family compare
H281DRAFT_01223 +0.5 2.7 monosaccharide ABC transporter ATP-binding protein, CUT2 family compare
H281DRAFT_06437 +0.5 2.1 FdhD protein compare
H281DRAFT_06197 +0.5 1.1 hypothetical protein compare
H281DRAFT_03800 +0.5 1.5 NitT/TauT family transport system substrate-binding protein compare
H281DRAFT_00954 +0.5 2.4 GDPmannose 4,6-dehydratase compare
H281DRAFT_05421 +0.5 1.6 transcriptional regulator, TetR family compare
H281DRAFT_04901 +0.5 1.2 microcin C transport system permease protein compare
H281DRAFT_02486 +0.5 2.7 oxalate/formate antiporter compare
H281DRAFT_05653 +0.5 1.1 hypothetical protein compare
H281DRAFT_04346 +0.5 1.2 uncharacterized protein compare
H281DRAFT_06355 +0.5 1.2 4-oxalomesaconate hydratase compare
H281DRAFT_05930 +0.5 2.2 rod shape-determining protein MreB compare
H281DRAFT_05499 +0.5 1.7 putative spermidine/putrescine transport system permease protein compare
H281DRAFT_05806 +0.5 2.7 dipeptide transport system ATP-binding protein compare
H281DRAFT_01689 +0.5 1.7 transcriptional regulator, AraC family with amidase-like domain compare
H281DRAFT_03524 +0.5 2.6 hypothetical protein compare
H281DRAFT_01767 +0.5 0.9 hypothetical protein compare
H281DRAFT_01711 +0.5 2.0 Na/Pi-cotransporter compare
H281DRAFT_04335 +0.5 2.7 hypothetical protein compare
H281DRAFT_03280 +0.4 2.2 UDP-glucuronate decarboxylase compare
H281DRAFT_03390 +0.4 1.9 H+/Cl- antiporter ClcA compare
H281DRAFT_06341 +0.4 1.6 glyoxylate/hydroxypyruvate reductase A compare
H281DRAFT_03306 +0.4 1.6 Cytochrome c, mono- and diheme variants compare
H281DRAFT_00267 +0.4 2.0 chromate transporter compare
H281DRAFT_03448 +0.4 1.1 Predicted ester cyclase compare
H281DRAFT_04792 +0.4 1.5 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_05080 +0.4 1.6 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily compare
H281DRAFT_00152 +0.4 0.9 Protein of unknown function (DUF3460) compare
H281DRAFT_00279 +0.4 2.1 chorismate lyase compare
H281DRAFT_00683 +0.4 2.7 GAF sensor hybrid histidine kinase (EC 2.7.13.3) compare
H281DRAFT_02939 +0.4 1.0 hypothetical protein compare
H281DRAFT_05632 +0.4 1.2 hypothetical protein compare
H281DRAFT_04846 +0.4 1.9 Putative flippase GtrA (transmembrane translocase of bactoprenol-linked glucose) compare
H281DRAFT_05089 +0.4 1.4 ribosome-associated protein compare
H281DRAFT_01701 +0.4 1.3 hypothetical protein compare
H281DRAFT_04178 +0.4 2.5 serine protease Do compare
H281DRAFT_01509 +0.4 1.0 Uncharacterized conserved protein YgbK, DUF1537 family compare
H281DRAFT_05427 +0.4 2.3 Two-component response regulator, AmiR/NasT family, consists of REC and RNA-binding antiterminator (ANTAR) domains compare
H281DRAFT_02754 +0.4 1.8 Glucose/arabinose dehydrogenase, beta-propeller fold compare
H281DRAFT_04758 +0.4 1.7 Predicted periplasmic or secreted lipoprotein compare
H281DRAFT_04869 +0.4 1.3 imidazolonepropionase compare
H281DRAFT_04935 +0.4 1.7 D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4) compare
H281DRAFT_05999 +0.4 2.0 hypothetical protein compare
H281DRAFT_03199 +0.4 2.2 flagellar transcriptional activator FlhD compare
H281DRAFT_01742 +0.4 1.5 putative oxidoreductase compare
H281DRAFT_03985 +0.4 2.1 Beta-ketoacyl synthase, N-terminal domain compare
H281DRAFT_01538 +0.4 1.9 RNA polymerase sigma-70 factor, ECF subfamily compare
H281DRAFT_02753 +0.4 0.8 Predicted dehydrogenase compare
H281DRAFT_01894 +0.4 1.2 transcriptional regulator, MarR family compare
H281DRAFT_00853 +0.4 1.2 3-oxoacyl-[acyl-carrier-protein] reductase /acetoacetyl-CoA reductase compare
H281DRAFT_03824 +0.4 1.2 zinc transporter compare
H281DRAFT_00409 +0.4 1.0 bacterioferritin compare
H281DRAFT_02903 +0.4 1.6 L-lactate dehydrogenase complex protein LldG compare
H281DRAFT_01705 +0.4 1.2 aliphatic nitrilase compare
H281DRAFT_03201 +0.4 1.3 transcriptional regulator, XRE family compare
H281DRAFT_03414 +0.4 1.0 outer membrane surface antigen compare
H281DRAFT_03575 +0.4 2.0 hypothetical protein compare
H281DRAFT_01279 +0.4 1.6 Nicotinamidase-related amidase compare
H281DRAFT_03496 +0.4 1.5 hypothetical protein compare
H281DRAFT_04652 +0.4 1.4 ADP-ribose pyrophosphatase YjhB, NUDIX family compare
H281DRAFT_01396 +0.4 1.6 hypothetical protein compare
H281DRAFT_01943 +0.4 1.7 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) compare
H281DRAFT_03745 +0.4 1.4 carbohydrate ABC transporter membrane protein 2, CUT1 family compare
H281DRAFT_03521 +0.4 1.2 hypothetical protein compare
H281DRAFT_02349 +0.4 1.6 general secretion pathway protein J compare
H281DRAFT_04601 +0.4 2.7 hypothetical protein compare
H281DRAFT_03795 +0.4 1.4 hypothetical protein compare
H281DRAFT_04744 +0.4 1.1 enoyl-CoA hydratase compare
H281DRAFT_01131 +0.4 1.2 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_06295 +0.4 2.2 2-keto-3-deoxy-phosphogalactonate aldolase compare


Specific Phenotypes

None in this experiment

For Paraburkholderia bryophila 376MFSha3.1 in carbon source experiments

For carbon source L-Glutamic acid monopotassium salt monohydrate across organisms