Experiment set6IT034 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with 4-Hydroxyacetophenone 0.00025 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3610 -4.1 -5.5 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_2428 -4.0 -3.9 Thiol-disulfide isomerase and thioredoxins compare
Pf6N2E2_3666 -3.8 -4.5 InaA protein compare
Pf6N2E2_3839 -3.8 -4.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_4584 -3.8 -3.6 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_5320 -3.7 -7.4 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf6N2E2_5027 -3.7 -12.1 AMP nucleosidase (EC 3.2.2.4) compare
Pf6N2E2_3842 -3.7 -4.3 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3253 -3.6 -6.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_5014 -3.6 -1.8 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_5321 -3.6 -8.0 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
Pf6N2E2_3841 -3.6 -4.2 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_3941 -3.5 -2.4 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_5178 -3.4 -2.3 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_3617 -3.3 -4.6 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_5319 -3.3 -8.2 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf6N2E2_3940 -3.3 -7.9 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3782 -3.2 -3.8 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_4611 -3.2 -3.1 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_5006 -3.1 -8.3 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_5242 -3.1 -2.1 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_2938 -3.0 -4.5 Outer membrane lipoprotein compare
Pf6N2E2_4159 -3.0 -4.5 Cytochrome c4 compare
Pf6N2E2_5318 -3.0 -17.0 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Pf6N2E2_4451 -3.0 -6.0 FIG139438: lipoprotein B compare
Pf6N2E2_3252 -3.0 -7.0 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_2261 -3.0 -2.0 VacJ-like lipoprotein precursor compare
Pf6N2E2_2447 -3.0 -7.5 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_4803 -2.9 -2.0 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_2274 -2.9 -5.2 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_2313 -2.9 -3.4 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_2201 -2.9 -4.3 Transmembrane regulator protein PrtR compare
Pf6N2E2_5150 -2.9 -5.4 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_4205 -2.8 -3.8 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_3665 -2.8 -1.4 serine/threonine protein kinase compare
Pf6N2E2_2310 -2.8 -8.8 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_2318 -2.8 -7.1 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_2752 -2.7 -5.8 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_4369 -2.7 -1.9 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_3198 -2.7 -1.8 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_4204 -2.7 -1.8 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_4206 -2.7 -2.5 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_5339 -2.7 -5.6 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_5338 -2.6 -7.0 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_5671 -2.6 -3.1 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_3658 -2.6 -5.8 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_5317 -2.6 -11.7 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Pf6N2E2_3251 -2.6 -8.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_2496 -2.6 -2.2 FIG00956575: hypothetical protein compare
Pf6N2E2_4607 -2.6 -4.3 Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR compare
Pf6N2E2_3258 -2.5 -3.5 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_5337 -2.5 -4.1 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_5647 -2.5 -5.0 Transcriptional regulator, TetR family compare
Pf6N2E2_2311 -2.5 -6.6 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_2384 -2.5 -4.4 CmpX compare
Pf6N2E2_2317 -2.5 -4.4 Putative analog of CcoH, COG3198 compare
Pf6N2E2_3783 -2.5 -5.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_4585 -2.5 -11.0 Cell division protein FtsX compare
Pf6N2E2_2218 -2.4 -3.3 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_5068 -2.4 -10.7 putative Cytochrome bd2, subunit I compare
Pf6N2E2_3611 -2.4 -1.7 HflC protein compare
Pf6N2E2_2835 -2.3 -1.8 Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) compare
Pf6N2E2_5494 -2.3 -4.4 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_4187 -2.2 -4.0 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_5739 -2.2 -1.5 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_3260 -2.2 -3.3 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_2189 -2.2 -4.5 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_2912 -2.2 -2.0 FIG00954094: hypothetical protein compare
Pf6N2E2_5727 -2.2 -5.2 FIG00955360: hypothetical protein compare
Pf6N2E2_144 -2.1 -14.1 Uncharacterized protein YtfM precursor compare
Pf6N2E2_5705 -2.1 -2.5 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_1056 -2.1 -1.3 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_902 -2.1 -2.7 hypothetical protein compare
Pf6N2E2_2292 -2.1 -2.9 Universal stress protein family COG0589 compare
Pf6N2E2_2320 -2.1 -3.1 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_4372 -2.1 -4.8 FIG00460773: hypothetical protein compare
Pf6N2E2_145 -2.1 -6.0 putative exported protein compare
Pf6N2E2_945 -2.1 -2.2 Transcriptional regulator, TetR family compare
Pf6N2E2_2510 -2.1 -3.9 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_4599 -2.0 -3.4 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) compare
Pf6N2E2_3257 -2.0 -2.0 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_760 -2.0 -9.6 Na+/H+ antiporter NhaB compare
Pf6N2E2_3834 -2.0 -4.5 Lipoprotein NlpD compare
Pf6N2E2_2074 -2.0 -1.7 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_3792 -1.9 -5.0 Glucans biosynthesis protein G precursor compare
Pf6N2E2_2574 -1.9 -1.8 Flagellar synthesis regulator FleN compare
Pf6N2E2_3612 -1.9 -2.2 HflK protein compare
Pf6N2E2_5527 -1.9 -2.2 Cold shock protein CspC compare
Pf6N2E2_5956 -1.9 -5.8 FIG004453: protein YceG like compare
Pf6N2E2_1434 -1.9 -2.9 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf6N2E2_5155 -1.9 -2.5 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_2527 -1.9 -3.8 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_2278 -1.9 -11.4 Transcription-repair coupling factor compare
Pf6N2E2_4541 -1.9 -1.3 hypothetical protein compare
Pf6N2E2_4764 -1.9 -4.2 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_2753 -1.9 -2.1 HtrA protease/chaperone protein compare
Pf6N2E2_2755 -1.8 -1.7 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_5544 -1.8 -6.8 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_1876 -1.8 -2.7 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) compare
Pf6N2E2_4072 -1.8 -4.3 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_5252 -1.8 -2.1 FIG00956396: hypothetical protein compare
Pf6N2E2_6140 -1.8 -1.3 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_3303 -1.8 -3.9 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_4759 -1.8 -9.6 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_5069 -1.8 -4.5 putative Cytochrome bd2, subunit II compare
Pf6N2E2_5703 -1.8 -4.0 outer membrane protein H1 compare
Pf6N2E2_5704 -1.8 -4.4 Transcriptional regulatory protein PhoP compare
Pf6N2E2_156 -1.7 -1.5 Carbon storage regulator compare
Pf6N2E2_2219 -1.7 -1.6 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_2549 -1.7 -1.5 hypothetical protein compare
Pf6N2E2_1860 -1.7 -2.4 Ferredoxin, 2Fe-2S compare
Pf6N2E2_4146 -1.7 -2.5 Membrane lipoprotein lipid attachment site containing protein USSDB6D compare
Pf6N2E2_3096 -1.7 -1.5 Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_3607 -1.7 -6.5 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_2518 -1.7 -1.3 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_6063 -1.7 -5.9 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_3521 -1.7 -6.9 Sensor histidine kinase/response regulator compare
Pf6N2E2_3791 -1.6 -7.2 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_1705 -1.6 -1.6 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_5523 -1.6 -3.7 Small-conductance mechanosensitive channel compare
Pf6N2E2_2111 -1.6 -2.8 Dehydrocarnitine CoA-transferase and acetoacetate CoA-transferase, subunit A (from data) compare
Pf6N2E2_4391 -1.6 -4.5 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
Pf6N2E2_4153 -1.6 -1.1 Sensory box histidine kinase compare
Pf6N2E2_4364 -1.6 -2.8 Protein YicC compare
Pf6N2E2_2282 -1.6 -2.9 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_2127 -1.6 -3.5 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_2706 -1.6 -2.7 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_1625 -1.5 -2.9 Ferric reductase (1.6.99.14) compare
Pf6N2E2_3833 -1.5 -4.2 hypothetical protein compare
Pf6N2E2_178 -1.5 -1.0 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_4763 -1.5 -6.4 Biotin synthesis protein BioC compare
Pf6N2E2_5370 -1.5 -7.0 LysR family transcriptional regulator QseA compare
Pf6N2E2_4047 -1.5 -4.0 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_4889 -1.5 -4.5 Putative transport protein compare
Pf6N2E2_600 -1.5 -2.1 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases compare
Pf6N2E2_3270 -1.4 -3.0 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_2010 -1.4 -1.6 hypothetical protein compare
Pf6N2E2_4999 -1.4 -4.5 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare
Pf6N2E2_3885 -1.4 -2.5 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf6N2E2_923 -1.4 -2.2 Haloacid dehalogenase, type II (EC 3.8.1.2) compare
Pf6N2E2_3560 -1.4 -4.2 membrane protein, putative compare
Pf6N2E2_1966 -1.4 -2.2 SAM-dependent methyltransferases compare
Pf6N2E2_5669 -1.4 -4.1 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf6N2E2_5574 -1.4 -6.7 Glycerol kinase (EC 2.7.1.30) compare
Pf6N2E2_5153 -1.4 -4.4 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) compare
Pf6N2E2_1452 -1.4 -3.1 hypothetical protein compare
Pf6N2E2_302 -1.4 -4.1 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_3460 -1.4 -1.3 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_2552 -1.4 -4.6 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_1147 -1.4 -2.0 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf6N2E2_5508 -1.3 -1.7 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_6059 -1.3 -2.3 FIG008443: hypothetical protein compare
Pf6N2E2_6022 -1.3 -2.4 StbE replicon stabilization toxin compare
Pf6N2E2_2340 -1.3 -3.6 Transcriptional regulator, GntR family compare
Pf6N2E2_2258 -1.3 -6.0 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_3770 -1.3 -1.5 ATP-dependent hsl protease ATP-binding subunit HslU compare
Pf6N2E2_828 -1.3 -3.2 Transcriptional regulator, TetR family compare
Pf6N2E2_3634 -1.3 -1.9 Transporter compare
Pf6N2E2_733 -1.3 -1.8 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Pf6N2E2_3039 -1.3 -3.6 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_5331 -1.3 -4.1 ATPase, AFG1 family compare
Pf6N2E2_3326 -1.3 -1.7 hypothetical protein compare
Pf6N2E2_5520 -1.3 -3.9 Sensory box histidine kinase compare
Pf6N2E2_3282 -1.3 -1.4 FIG005080: Possible exported protein compare
Pf6N2E2_1885 -1.3 -2.3 Transcriptional regulator, AraC family compare
Pf6N2E2_3100 -1.2 -2.3 FIG00953063: hypothetical protein compare
Pf6N2E2_5172 -1.2 -2.7 FOG: TPR repeat compare
Pf6N2E2_6064 -1.2 -3.8 2-methylaconitate isomerase compare
Pf6N2E2_189 -1.2 -2.2 regulatory protein, putative compare
Pf6N2E2_4631 -1.2 -5.7 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf6N2E2_4762 -1.2 -2.5 Biotin synthesis protein BioH compare
Pf6N2E2_33 -1.2 -2.0 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_5340 -1.2 -2.9 Stringent starvation protein A compare
Pf6N2E2_4454 -1.2 -3.7 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_1626 -1.2 -4.2 Putative ATP-binding component of a transport system compare
Pf6N2E2_1258 -1.2 -2.5 FIG00960119: hypothetical protein compare
Pf6N2E2_5668 -1.2 -3.0 Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) compare
Pf6N2E2_445 -1.2 -3.4 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_1443 -1.2 -2.2 putative aldo/keto reductase compare
Pf6N2E2_5291 -1.1 -8.3 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf6N2E2_2180 -1.1 -2.3 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_2503 -1.1 -1.0 Glycosyl transferase, group 1 family protein compare
Pf6N2E2_4761 -1.1 -5.3 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_5780 -1.1 -5.2 Periplasmic protease compare
Pf6N2E2_96 -1.1 -2.8 FIG011065: hypothetical protein compare
Pf6N2E2_291 -1.1 -2.8 ATP-dependent Clp protease adaptor protein ClpS compare
Pf6N2E2_4511 -1.1 -6.2 glutamine synthetase family protein compare
Pf6N2E2_2152 -1.1 -0.9 hypothetical protein compare
Pf6N2E2_3344 -1.1 -2.8 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD compare
Pf6N2E2_2681 -1.1 -2.5 3-phosphoglycerate kinase compare
Pf6N2E2_1477 -1.1 -3.3 hypothetical protein compare
Pf6N2E2_1463 -1.1 -1.7 Isochorismate pyruvate-lyase (EC 4.-.-.-) compare
Pf6N2E2_3840 -1.1 -2.2 FIG00956267: hypothetical protein compare
Pf6N2E2_4139 -1.1 -6.0 Integral membrane protein TerC compare
Pf6N2E2_2986 -1.1 -1.4 Transcriptional regulator, LuxR family compare
Pf6N2E2_4416 -1.1 -1.6 Tyrosine recombinase XerC compare
Pf6N2E2_423 -1.1 -1.9 Putative phosphatase YfbT compare
Pf6N2E2_4640 -1.1 -1.4 hypothetical protein compare
Pf6N2E2_5722 -1.0 -3.1 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 compare
Pf6N2E2_2073 -1.0 -4.1 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare


Specific Phenotypes

For 1 genes in this experiment

For stress 4-Hydroxyacetophenone in Pseudomonas fluorescens FW300-N2E2

For stress 4-Hydroxyacetophenone across organisms