Experiment set6IT034 for Paraburkholderia graminis OAS925

Compare to:

Lumichrome carbon source

200 most important genes:

  gene name fitness t score description  
ABIE53_001858 -2.7 -2.5 uncharacterized protein YqgQ compare
ABIE53_000306 -2.4 -1.8 general secretion pathway protein M compare
ABIE53_003752 -2.3 -1.4 cytochrome c-type biogenesis protein CcsB compare
ABIE53_000745 -2.3 -2.4 two-component system capsular synthesis response regulator RcsB compare
ABIE53_006323 -1.8 -2.4 AraC family transcriptional activator of pobA compare
ABIE53_001421 -1.7 -2.3 cytochrome c553 compare
ABIE53_006252 -1.7 -2.9 fumarylacetoacetate (FAA) hydrolase family protein compare
ABIE53_000798 -1.6 -5.3 peptidyl-prolyl cis-trans isomerase SurA compare
ABIE53_006163 -1.5 -1.9 transcriptional regulator GlxA family with amidase domain compare
ABIE53_001725 -1.5 -2.9 AGZA family xanthine/uracil permease-like MFS transporter compare
ABIE53_003160 -1.5 -8.2 hypothetical protein compare
ABIE53_002739 -1.5 -4.1 outer membrane protein assembly factor BamB compare
ABIE53_000883 -1.5 -1.2 colicin import membrane protein compare
ABIE53_003162 -1.5 -3.0 OOP family OmpA-OmpF porin compare
ABIE53_001191 -1.5 -3.7 hypothetical protein compare
ABIE53_005028 -1.5 -2.1 GNAT superfamily N-acetyltransferase compare
ABIE53_005044 -1.3 -1.2 putative AcnD-accessory protein PrpF compare
ABIE53_000633 -1.3 -1.6 hypothetical protein compare
ABIE53_004023 -1.3 -2.4 hypothetical protein compare
ABIE53_005194 -1.3 -2.8 hypothetical protein compare
ABIE53_005295 -1.3 -1.6 putative FmdB family regulatory protein compare
ABIE53_003125 -1.3 -2.3 large subunit ribosomal protein L19 compare
ABIE53_005957 -1.2 -2.2 hypothetical protein compare
ABIE53_001720 -1.2 -1.3 LysR family transcriptional regulator of abg operon compare
ABIE53_005183 -1.2 -1.5 hypothetical protein compare
ABIE53_000299 -1.2 -5.1 general secretion pathway protein C compare
ABIE53_001859 -1.2 -2.3 hypothetical protein compare
ABIE53_005457 -1.2 -2.1 sporulation protein YlmC with PRC-barrel domain compare
ABIE53_005021 -1.2 -2.0 putative cupin superfamily protein compare
ABIE53_006341 -1.2 -1.6 methylglutaconyl-CoA hydratase compare
ABIE53_005769 -1.1 -2.1 hypothetical protein compare
ABIE53_005214 -1.1 -2.0 polyisoprenoid-binding protein YceI compare
ABIE53_001986 -1.1 -2.8 nucleotide-binding universal stress UspA family protein compare
ABIE53_006565 -1.1 -1.6 hypothetical protein compare
ABIE53_001232 -1.1 -1.5 sirohydrochlorin cobaltochelatase compare
ABIE53_002546 -1.1 -1.8 cell wall-associated NlpC family hydrolase compare
ABIE53_002443 -1.1 -3.2 prepilin peptidase CpaA compare
ABIE53_005569 -1.1 -3.6 DNA-binding protein H-NS compare
ABIE53_003466 -1.1 -1.5 hypothetical protein compare
ABIE53_000303 -1.1 -4.3 general secretion pathway protein J compare
ABIE53_000305 -1.1 -8.6 general secretion pathway protein L compare
ABIE53_003749 -1.1 -4.2 diaminopimelate decarboxylase compare
ABIE53_004259 -1.0 -1.2 hypothetical protein compare
ABIE53_002601 -1.0 -1.7 chaperonin GroES compare
ABIE53_004630 -1.0 -0.8 hypothetical protein compare
ABIE53_001385 -1.0 -1.5 uncharacterized protein YjbJ (UPF0337 family) compare
ABIE53_003571 -1.0 -1.5 thiol peroxidase compare
ABIE53_005347 -1.0 -3.4 NNP family nitrate/nitrite transporter-like MFS transporter compare
ABIE53_004619 -1.0 -1.4 mannose-6-phosphate isomerase-like protein (cupin superfamily) compare
ABIE53_003988 -1.0 -1.6 small multidrug resistance pump compare
ABIE53_000367 -1.0 -2.2 NAD-dependent SIR2 family protein deacetylase compare
ABIE53_004228 -1.0 -2.2 two-component system OmpR family response regulator compare
ABIE53_003687 -1.0 -7.1 serine protease DegQ compare
ABIE53_001031 -1.0 -2.4 two-component system sensor histidine kinase QseC compare
ABIE53_000262 -1.0 -1.5 chromosome partitioning protein compare
ABIE53_000297 -1.0 -6.8 general secretion pathway protein E compare
ABIE53_001500 -1.0 -2.0 enoyl-CoA hydratase/carnithine racemase compare
ABIE53_002746 -1.0 -5.3 modulator of FtsH protease compare
ABIE53_006533 -1.0 -1.3 octopine/nopaline transport system ATP-binding protein compare
ABIE53_000298 -1.0 -7.4 general secretion pathway protein F compare
ABIE53_001719 -1.0 -3.0 LysR family transcriptional regulator (chromosome initiation inhibitor) compare
ABIE53_006420 -1.0 -1.1 hyperosmotically inducible protein compare
ABIE53_000805 -1.0 -2.1 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
ABIE53_005241 -1.0 -2.4 uncharacterized protein YjbJ (UPF0337 family) compare
ABIE53_001010 -0.9 -1.8 hypothetical protein compare
ABIE53_001140 -0.9 -1.2 dTDP-4-dehydrorhamnose reductase compare
ABIE53_000304 -0.9 -5.9 general secretion pathway protein K compare
ABIE53_004973 -0.9 -1.3 hypothetical protein compare
ABIE53_006257 -0.9 -1.5 hypothetical protein compare
ABIE53_005419 -0.9 -1.3 nitroreductase compare
ABIE53_002794 -0.9 -3.0 PAS domain S-box-containing protein compare
ABIE53_005223 -0.9 -1.0 4-hydroxy-2-oxoheptanedioate aldolase compare
ABIE53_000818 -0.9 -4.5 uncharacterized membrane protein YhaH (DUF805 family) compare
ABIE53_000412 -0.9 -6.0 PAT family beta-lactamase induction signal transducer AmpG compare
ABIE53_000295 -0.9 -7.0 general secretion pathway protein D compare
ABIE53_002259 -0.9 -3.5 DeoR family deoxyribose operon repressor compare
ABIE53_004811 -0.9 -4.3 tryptophan synthase alpha chain compare
ABIE53_006559 -0.9 -0.9 monosaccharide-transporting ATPase compare
ABIE53_005368 -0.8 -1.7 hypothetical protein compare
ABIE53_002862 -0.8 -5.1 outer membrane protein assembly factor BamC compare
ABIE53_000840 -0.8 -3.8 pyrroline-5-carboxylate reductase compare
ABIE53_005874 -0.8 -1.8 protease I compare
ABIE53_000307 -0.8 -3.8 general secretion pathway protein N compare
ABIE53_001743 -0.8 -1.9 hypothetical protein compare
ABIE53_001007 -0.8 -1.0 hypothetical protein compare
ABIE53_006056 -0.8 -1.7 hypothetical protein compare
ABIE53_005520 -0.8 -2.9 quinoprotein dehydrogenase-associated probable ABC transporter substrate-binding protein compare
ABIE53_005022 -0.8 -1.4 putative deacylase compare
ABIE53_004482 -0.8 -1.5 TetR/AcrR family transcriptional repressor of nem operon compare
ABIE53_003561 -0.8 -1.1 exoribonuclease-2 compare
ABIE53_002101 -0.8 -4.5 two-component system phosphate regulon response regulator OmpR compare
ABIE53_004191 -0.8 -2.3 DNA-binding NarL/FixJ family response regulator compare
ABIE53_003218 -0.8 -1.1 addiction module HigA family antidote compare
ABIE53_003596 -0.8 -5.5 leader peptidase (prepilin peptidase)/N-methyltransferase compare
ABIE53_003044 -0.8 -1.7 hypothetical protein compare
ABIE53_004296 -0.8 -2.7 threonine dehydratase compare
ABIE53_001328 -0.8 -2.8 putative ABC transport system permease protein compare
ABIE53_002844 -0.8 -2.4 bacterioferritin compare
ABIE53_006131 -0.8 -1.6 phenylpropionate dioxygenase-like ring-hydroxylating dioxygenase large terminal subunit compare
ABIE53_000223 -0.8 -1.9 hypothetical protein compare
ABIE53_002873 -0.8 -1.5 dihydropyrimidine dehydrogenase (NAD+) subunit PreA compare
ABIE53_005307 -0.8 -1.3 catechol 2,3-dioxygenase-like lactoylglutathione lyase family enzyme compare
ABIE53_000061 -0.8 -2.9 methylenetetrahydrofolate reductase (NADPH) compare
ABIE53_005388 -0.8 -3.4 hypothetical protein compare
ABIE53_005076 -0.8 -3.2 hypothetical protein compare
ABIE53_006063 -0.8 -2.1 AmiR/NasT family two-component response regulator compare
ABIE53_005079 -0.8 -1.3 DNA-binding transcriptional LysR family regulator compare
ABIE53_001416 -0.8 -3.4 transaldolase compare
ABIE53_006295 -0.7 -1.9 ribose transport system permease protein compare
ABIE53_002402 -0.7 -1.4 low affinity Fe/Cu permease compare
ABIE53_005332 -0.7 -1.1 regulator of RNase E activity RraA compare
ABIE53_004307 -0.7 -1.6 hypothetical protein compare
ABIE53_005395 -0.7 -1.1 hypothetical protein compare
ABIE53_001869 -0.7 -0.7 ABC-type sugar transport system substrate-binding protein compare
ABIE53_001630 -0.7 -1.2 putative secreted hydrolase compare
ABIE53_003445 -0.7 -2.9 succinyl-CoA synthetase beta subunit compare
ABIE53_002568 -0.7 -2.9 putative intracellular protease/amidase compare
ABIE53_001896 -0.7 -1.8 hydroxyquinol 1,2-dioxygenase compare
ABIE53_004848 -0.7 -1.7 chromate transporter compare
ABIE53_004201 -0.7 -1.5 DNA-binding MarR family transcriptional regulator compare
ABIE53_002652 -0.7 -0.8 hypothetical protein compare
ABIE53_006041 -0.7 -1.4 type III secretion protein U compare
ABIE53_004417 -0.7 -1.3 hypothetical protein compare
ABIE53_001723 -0.7 -2.4 MFS family permease compare
ABIE53_003231 -0.7 -1.2 DNA-directed RNA polymerase subunit omega compare
ABIE53_004221 -0.7 -2.0 NitT/TauT family transport system permease protein compare
ABIE53_003565 -0.7 -2.4 thiol-disulfide isomerase/thioredoxin compare
ABIE53_003669 -0.7 -0.8 CspA family cold shock protein compare
ABIE53_004394 -0.7 -1.8 pimeloyl-ACP methyl ester carboxylesterase compare
ABIE53_005250 -0.7 -1.4 glycosyltransferase involved in cell wall biosynthesis compare
ABIE53_002981 -0.7 -1.1 hypothetical protein compare
ABIE53_001238 -0.7 -3.7 cytochrome c compare
ABIE53_004265 -0.7 -1.9 branched-chain amino acid transport system ATP-binding protein compare
ABIE53_003960 -0.7 -2.0 D-methionine transport system substrate-binding protein compare
ABIE53_003665 -0.7 -2.2 monothiol glutaredoxin compare
ABIE53_000885 -0.7 -2.9 biopolymer transport protein TolQ compare
ABIE53_003258 -0.7 -3.9 YggT family protein compare
ABIE53_005481 -0.7 -1.8 coenzyme PQQ biosynthesis protein C compare
ABIE53_001944 -0.7 -1.7 HTH-type transcriptional regulator/antitoxin HigA compare
ABIE53_002626 -0.7 -1.2 AcrR family transcriptional regulator compare
ABIE53_001974 -0.7 -1.6 hypothetical protein compare
ABIE53_006078 -0.7 -2.4 glycosyltransferase involved in cell wall biosynthesis compare
ABIE53_001976 -0.7 -0.7 hypothetical protein compare
ABIE53_005411 -0.7 -3.8 type I restriction enzyme S subunit compare
ABIE53_000045 -0.7 -3.3 5-formyltetrahydrofolate cyclo-ligase compare
ABIE53_006305 -0.7 -1.7 ketosteroid isomerase-like protein compare
ABIE53_003512 -0.7 -1.9 DNA-binding transcriptional LysR family regulator compare
ABIE53_002835 -0.7 -2.6 DNA-binding LacI/PurR family transcriptional regulator compare
ABIE53_001049 -0.7 -1.6 hypothetical protein compare
ABIE53_006346 -0.7 -1.4 peptide/nickel transport system permease protein compare
ABIE53_003948 -0.6 -2.2 NAD(P)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family) compare
ABIE53_005284 -0.6 -1.1 hypothetical protein compare
ABIE53_001490 -0.6 -1.2 uncharacterized protein (DUF1330 family) compare
ABIE53_002811 -0.6 -4.6 YVTN family beta-propeller protein compare
ABIE53_002113 -0.6 -2.6 hypothetical protein compare
ABIE53_006065 -0.6 -2.2 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase A subunit family amidase compare
ABIE53_006335 -0.6 -2.2 putative porin compare
ABIE53_000453 -0.6 -0.7 hypothetical protein compare
ABIE53_000876 -0.6 -2.6 ribosome-binding protein aMBF1 (putative translation factor) compare
ABIE53_004324 -0.6 -4.4 LuxR family quorum-sensing transcriptional regulator LasR compare
ABIE53_006549 -0.6 -1.5 malonate decarboxylase delta subunit compare
ABIE53_005519 -0.6 -1.2 mono/diheme cytochrome c family protein compare
ABIE53_005741 -0.6 -2.2 NitT/TauT family transport system substrate-binding protein compare
ABIE53_004031 -0.6 -1.0 DNA-binding transcriptional LysR family regulator compare
ABIE53_005704 -0.6 -0.7 polyferredoxin compare
ABIE53_005751 -0.6 -1.8 NADPH-dependent ferric siderophore reductase compare
ABIE53_004061 -0.6 -2.8 multiple sugar transport system substrate-binding protein compare
ABIE53_000300 -0.6 -3.4 general secretion pathway protein G compare
ABIE53_004058 -0.6 -1.6 CRP-like cAMP-binding protein compare
ABIE53_005688 -0.6 -2.8 hypothetical protein compare
ABIE53_004379 -0.6 -1.7 hypothetical protein compare
ABIE53_002937 -0.6 -2.3 adenosylhomocysteine nucleosidase compare
ABIE53_006147 -0.6 -1.0 TetR/AcrR family transcriptional repressor of bet genes compare
ABIE53_004181 -0.6 -1.0 sarcosine oxidase subunit beta compare
ABIE53_006435 -0.6 -2.5 hypothetical protein compare
ABIE53_004245 -0.6 -1.4 FMN-dependent NADH-azoreductase compare
ABIE53_002217 -0.6 -2.2 glutathione S-transferase compare
ABIE53_005227 -0.6 -1.4 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase compare
ABIE53_000413 -0.6 -2.6 methionine biosynthesis protein MetW compare
ABIE53_006331 -0.6 -1.2 ACS family D-galactonate transporter-like MFS transporter compare
ABIE53_002554 -0.6 -2.1 putative porin compare
ABIE53_002129 -0.6 -1.3 meso-butanediol dehydrogenase/(S,S)-butanediol dehydrogenase/diacetyl reductase compare
ABIE53_006537 -0.6 -1.9 protein-S-isoprenylcysteine O-methyltransferase Ste14 compare
ABIE53_002072 -0.6 -2.6 hypothetical protein compare
ABIE53_003934 -0.6 -1.7 type VI secretion system protein ImpH compare
ABIE53_002684 -0.6 -2.2 TetR/AcrR family transcriptional repressor of nem operon compare
ABIE53_004189 -0.6 -0.8 hypothetical protein compare
ABIE53_001338 -0.6 -2.5 D-galactonate transporter compare
ABIE53_002558 -0.6 -0.9 HEAT repeat protein compare
ABIE53_002923 -0.6 -1.3 NAD(P)H dehydrogenase (quinone) compare
ABIE53_000884 -0.6 -1.7 biopolymer transport protein TolR compare
ABIE53_002884 -0.6 -1.9 pimeloyl-ACP methyl ester carboxylesterase compare
ABIE53_003517 -0.6 -1.9 phosphogluconate dehydratase compare
ABIE53_005333 -0.6 -2.4 sugar phosphate permease compare
ABIE53_004987 -0.6 -1.5 transketolase compare
ABIE53_001502 -0.6 -2.4 hypothetical protein compare
ABIE53_006350 -0.6 -1.1 peptide/nickel transport system ATP-binding protein compare
ABIE53_006077 -0.6 -3.0 L-fuconolactonase compare
ABIE53_004252 -0.6 -1.5 putative pyridoxine 5'-phosphate oxidase superfamily flavin-nucleotide-binding protein compare
ABIE53_004212 -0.6 -2.6 1-phosphofructokinase compare


Specific Phenotypes

None in this experiment

For Paraburkholderia graminis OAS925 in carbon source experiments

For carbon source Lumichrome across organisms