Experiment set6IT033 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

p-Coumaric acid carbon source

200 most important genes:

  gene name fitness t score description  
H281DRAFT_05713 -6.6 -6.4 anthranilate phosphoribosyltransferase compare
H281DRAFT_05714 -6.3 -4.4 anthranilate synthase, component II compare
H281DRAFT_01596 -6.0 -5.8 3-oxoadipate CoA-transferase beta subunit compare
H281DRAFT_00909 -6.0 -5.8 phosphoribosylformylglycinamidine synthase compare
H281DRAFT_00115 -5.7 -3.7 Uncharacterized conserved protein, DUF934 family compare
H281DRAFT_02214 -5.7 -19.3 homoserine O-acetyltransferase compare
H281DRAFT_00176 -5.5 -3.8 outer membrane lipoprotein carrier protein compare
H281DRAFT_06075 -5.5 -9.6 3-isopropylmalate dehydratase, large subunit compare
H281DRAFT_06067 -5.5 -15.1 tryptophan synthase, beta chain compare
H281DRAFT_02004 -5.4 -5.2 phosphoglycerate mutase compare
H281DRAFT_06065 -5.4 -10.3 tryptophan synthase, alpha chain compare
H281DRAFT_04610 -5.3 -18.2 Fe-S oxidoreductase compare
H281DRAFT_00120 -5.3 -5.2 sirohydrochlorin cobaltochelatase compare
H281DRAFT_04831 -5.1 -3.5 hypothetical protein compare
H281DRAFT_05715 -5.1 -18.8 anthranilate synthase, component I compare
H281DRAFT_03926 -5.1 -10.8 phosphoserine aminotransferase apoenzyme compare
H281DRAFT_00117 -5.1 -6.8 sulfate adenylyltransferase subunit 2 compare
H281DRAFT_06072 -5.0 -8.4 3-isopropylmalate dehydrogenase compare
H281DRAFT_04679 -5.0 -6.0 pyrroline-5-carboxylate reductase compare
H281DRAFT_06068 -4.9 -6.0 phosphoribosylanthranilate isomerase compare
H281DRAFT_06264 -4.7 -3.7 glutamate 5-kinase compare
H281DRAFT_06059 -4.6 -9.3 O-succinylhomoserine sulfhydrylase compare
H281DRAFT_05641 -4.4 -5.2 phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein compare
H281DRAFT_01277 -4.3 -5.5 vanillin dehydrogenase conserved
H281DRAFT_05620 -4.3 -14.7 glutamate synthase (NADH) large subunit compare
H281DRAFT_01594 -4.2 -4.2 3-oxoadipate enol-lactonase compare
H281DRAFT_04302 -4.2 -5.0 molybdopterin adenylyltransferase compare
H281DRAFT_04553 -4.2 -6.8 ketol-acid reductoisomerase compare
H281DRAFT_00627 -4.1 -9.9 phosphoenolpyruvate synthase compare
H281DRAFT_04710 -4.1 -5.4 phosphoribosylformylglycinamidine cyclo-ligase compare
H281DRAFT_06073 -4.1 -5.3 3-isopropylmalate dehydratase, small subunit compare
H281DRAFT_00860 -4.0 -1.7 phosphoserine phosphatase compare
H281DRAFT_05712 -3.9 -3.5 indole-3-glycerol phosphate synthase compare
H281DRAFT_05801 -3.9 -6.9 5,10-methylenetetrahydrofolate reductase (NAD(P)) compare
H281DRAFT_00118 -3.8 -8.4 sulfate adenylyltransferase subunit 1 compare
H281DRAFT_06060 -3.8 -6.0 amidophosphoribosyltransferase compare
H281DRAFT_02000 -3.7 -6.5 glycerol-3-phosphate dehydrogenase (NAD(P)+) compare
H281DRAFT_03864 -3.6 -4.2 protocatechuate 3,4-dioxygenase, alpha subunit compare
H281DRAFT_00114 -3.5 -4.7 sulfite reductase (NADPH) beta subunit compare
H281DRAFT_04120 -3.5 -8.0 argininosuccinate synthase compare
H281DRAFT_01597 -3.5 -7.8 3-oxoadipate CoA-transferase alpha subunit compare
H281DRAFT_00113 -3.5 -4.5 transcriptional regulator, LysR family compare
H281DRAFT_01166 -3.4 -3.7 p-hydroxybenzoate 3-monooxygenase conserved
H281DRAFT_01595 -3.3 -4.0 3-carboxy-cis,cis-muconate cycloisomerase compare
H281DRAFT_04119 -3.2 -4.7 ornithine carbamoyltransferase compare
H281DRAFT_01598 -3.1 -6.9 transcriptional regulator, LysR family compare
H281DRAFT_00395 -3.1 -7.2 hydroxymethylpyrimidine synthase compare
H281DRAFT_03866 -3.0 -2.9 transcriptional regulator, LysR family compare
H281DRAFT_02245 -3.0 -8.1 transcriptional regulator, LysR family compare
H281DRAFT_03925 -3.0 -10.1 chorismate mutase compare
H281DRAFT_03865 -3.0 -6.4 protocatechuate 3,4-dioxygenase, beta subunit compare
H281DRAFT_00194 -2.9 -2.8 argininosuccinate lyase compare
H281DRAFT_06322 -2.9 -5.1 LPS-assembly lipoprotein compare
H281DRAFT_04171 -2.8 -6.3 membrane fusion protein, multidrug efflux system compare
H281DRAFT_05645 -2.8 -7.1 phospholipid transport system substrate-binding protein compare
H281DRAFT_02215 -2.8 -4.0 methionine biosynthesis protein MetW compare
H281DRAFT_03615 -2.8 -7.1 hopanoid biosynthesis associated radical SAM protein HpnH compare
H281DRAFT_01276 -2.7 -3.6 vanillin synthase /trans-feruloyl-CoA hydratase compare
H281DRAFT_05643 -2.7 -5.7 phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein compare
H281DRAFT_01985 -2.6 -7.3 protoheme IX farnesyltransferase compare
H281DRAFT_04170 -2.6 -6.8 multidrug efflux pump compare
H281DRAFT_03611 -2.5 -2.6 hopanoid-associated phosphorylase compare
H281DRAFT_05705 -2.5 -3.1 hypothetical protein compare
H281DRAFT_04707 -2.5 -6.3 HAD-superfamily subfamily IB hydrolase, TIGR01490 compare
H281DRAFT_05621 -2.5 -2.6 glutamate synthase (NADH) small subunit compare
H281DRAFT_01889 -2.3 -5.8 7-cyano-7-deazaguanine reductase compare
H281DRAFT_00116 -2.3 -2.4 phosphoadenylylsulfate reductase (thioredoxin) compare
H281DRAFT_05086 -2.3 -2.5 DNA helicase/exodeoxyribonuclease V, beta subunit compare
H281DRAFT_02036 -2.3 -5.2 Thiol-disulfide isomerase or thioredoxin compare
H281DRAFT_01504 -2.3 -10.1 3-oxoadipyl-CoA thiolase compare
H281DRAFT_04687 -2.2 -9.4 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase compare
H281DRAFT_04169 -2.2 -6.5 outer membrane protein, multidrug efflux system compare
H281DRAFT_03613 -2.1 -8.6 hypothetical protein compare
H281DRAFT_04835 -2.1 -2.6 hypothetical protein compare
H281DRAFT_04021 -2.1 -2.7 3,4-dihydroxy-2-butanone 4-phosphate synthase /GTP cyclohydrolase II compare
H281DRAFT_02008 -2.1 -6.9 phosphocarrier protein compare
H281DRAFT_04191 -2.1 -5.9 Branched-chain amino acid transport protein compare
H281DRAFT_05609 -2.0 -3.0 penicillin-binding protein 1A compare
H281DRAFT_02205 -1.9 -2.5 transcriptional regulator, TraR/DksA family compare
H281DRAFT_01894 -1.9 -1.8 transcriptional regulator, MarR family compare
H281DRAFT_01278 -1.8 -4.7 trans-feruloyl-CoA synthase conserved
H281DRAFT_03610 -1.8 -3.8 squalene-hopene/tetraprenyl-beta-curcumene cyclase compare
H281DRAFT_06315 -1.8 -2.3 glyceraldehyde-3-phosphate dehydrogenase (NAD+) compare
H281DRAFT_05642 -1.6 -2.9 phospholipid/cholesterol/gamma-HCH transport system permease protein compare
H281DRAFT_04192 -1.6 -9.7 Predicted branched-chain amino acid permease (azaleucine resistance) compare
H281DRAFT_03614 -1.6 -8.9 ABC-type transporter Mla maintaining outer membrane lipid asymmetry, MlaC component compare
H281DRAFT_05717 -1.6 -5.6 ribulose-5-phosphate 3-epimerase compare
H281DRAFT_03094 -1.6 -1.8 transcriptional regulator, MarR family compare
H281DRAFT_00812 -1.6 -1.9 molybdopterin molybdotransferase compare
H281DRAFT_00529 -1.6 -4.1 KUP system potassium uptake protein compare
H281DRAFT_05646 -1.5 -1.0 hypothetical protein compare
H281DRAFT_03612 -1.5 -5.8 phospholipid-binding lipoprotein MlaA compare
H281DRAFT_03909 -1.5 -6.6 Acetoin utilization deacetylase AcuC compare
H281DRAFT_03619 -1.5 -5.6 dihydroflavonol-4-reductase compare
H281DRAFT_00199 -1.5 -2.1 uroporphyrinogen III methyltransferase / synthase compare
H281DRAFT_04953 -1.5 -9.5 acetyl-coenzyme A synthetase compare
H281DRAFT_03028 -1.4 -5.3 2-aminoethylphosphonate-pyruvate transaminase compare
H281DRAFT_06039 -1.4 -4.1 molybdate transport system ATP-binding protein compare
H281DRAFT_04974 -1.4 -4.7 aromatic-amino-acid transaminase compare
H281DRAFT_04399 -1.4 -3.0 hydroxyacylglutathione hydrolase compare
H281DRAFT_05974 -1.4 -1.8 carbon-monoxide dehydrogenase medium subunit compare
H281DRAFT_05469 -1.3 -2.7 transcriptional regulator, IclR family compare
H281DRAFT_04844 -1.3 -8.1 Glycosyltransferase, GT2 family compare
H281DRAFT_04727 -1.3 -2.5 transcriptional repressor NrdR compare
H281DRAFT_03026 -1.3 -6.9 phosphoenolpyruvate mutase compare
H281DRAFT_04851 -1.3 -3.4 NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC compare
H281DRAFT_05400 -1.3 -7.2 isoquinoline 1-oxidoreductase, beta subunit compare
H281DRAFT_01610 -1.3 -4.4 Choline kinase compare
H281DRAFT_05274 -1.3 -3.6 Uncharacterized protein YcsI, UPF0317 family compare
H281DRAFT_04075 -1.2 -6.8 formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase compare
H281DRAFT_02187 -1.2 -6.6 predicted sulfurylase large subunit, molybdopterin cytosine dinucleotide biosynthesis /predicted sulfurylase small subunit, molybdopterin cytosine dinucleotide biosynthesis compare
H281DRAFT_06037 -1.2 -1.4 molybdate transport system substrate-binding protein compare
H281DRAFT_05279 -1.2 -1.9 malonate decarboxylase beta subunit compare
H281DRAFT_02339 -1.2 -8.1 glutamate-cysteine ligase compare
H281DRAFT_04640 -1.2 -2.2 dimethyladenosine transferase compare
H281DRAFT_04706 -1.2 -5.3 poly(A) polymerase compare
H281DRAFT_05667 -1.2 -5.3 serine protease DegQ compare
H281DRAFT_04008 -1.2 -1.7 RNAse PH compare
H281DRAFT_02065 -1.2 -1.6 rfaE bifunctional protein, domain II compare
H281DRAFT_06562 -1.2 -1.6 hypothetical protein compare
H281DRAFT_06023 -1.2 -3.1 hypothetical protein compare
H281DRAFT_00712 -1.2 -6.4 RNAse R compare
H281DRAFT_04624 -1.1 -8.3 hypothetical protein compare
H281DRAFT_01935 -1.1 -4.1 Tetratricopeptide repeat-containing protein compare
H281DRAFT_00799 -1.1 -7.2 PhoH-like ATPase compare
H281DRAFT_02425 -1.1 -6.0 NAD-dependent aldehyde dehydrogenases compare
H281DRAFT_02864 -1.1 -3.7 precorrin-8X methylmutase compare
H281DRAFT_03278 -1.1 -1.5 Threonine dehydrogenase compare
H281DRAFT_00809 -1.1 -5.3 alanine-synthesizing transaminase compare
H281DRAFT_02201 -1.1 -2.4 hypothetical protein compare
H281DRAFT_00290 -1.1 -2.2 Cytochrome c553 compare
H281DRAFT_04475 -1.1 -5.9 Uncharacterized membrane protein YccC compare
H281DRAFT_00851 -1.1 -7.3 polyhydroxyalkanoate synthase compare
H281DRAFT_02410 -1.1 -4.5 glycine cleavage system H protein compare
H281DRAFT_01322 -1.1 -1.5 Predicted ATP-dependent carboligase, ATP-grasp superfamily compare
H281DRAFT_03497 -1.1 -2.8 transcriptional regulator, DeoR family compare
H281DRAFT_06480 -1.1 -1.9 arginine succinyltransferase compare
H281DRAFT_05563 -1.1 -1.2 Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC compare
H281DRAFT_02411 -1.1 -4.6 aminomethyltransferase compare
H281DRAFT_06255 -1.0 -5.8 leader peptidase (prepilin peptidase) / N-methyltransferase compare
H281DRAFT_03027 -1.0 -3.8 phosphonopyruvate decarboxylase compare
H281DRAFT_04297 -1.0 -6.8 adenosylcobinamide-phosphate synthase compare
H281DRAFT_01613 -1.0 -4.6 Phosphatidylglycerophosphate synthase compare
H281DRAFT_05087 -1.0 -1.5 exodeoxyribonuclease V alpha subunit compare
H281DRAFT_04033 -1.0 -2.0 YggT family protein compare
H281DRAFT_02235 -1.0 -4.5 multi-sensor signal transduction histidine kinase compare
H281DRAFT_01572 -1.0 -2.0 Predicted oxidoreductase compare
H281DRAFT_01184 -1.0 -1.6 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_03863 -1.0 -1.3 D-alanyl-D-alanine carboxypeptidase compare
H281DRAFT_04721 -1.0 -1.7 Cell division and transport-associated protein TolR compare
H281DRAFT_06163 -1.0 -1.2 hypothetical protein compare
H281DRAFT_05116 -1.0 -4.2 cell division protein ZapE compare
H281DRAFT_00152 -1.0 -1.3 Protein of unknown function (DUF3460) compare
H281DRAFT_02352 -1.0 -3.9 general secretion pathway protein G compare
H281DRAFT_04643 -1.0 -4.4 methylmalonyl-CoA epimerase compare
H281DRAFT_00650 -1.0 -4.2 transcriptional regulator, DeoR family compare
H281DRAFT_00886 -1.0 -2.1 two component transcriptional regulator, winged helix family compare
H281DRAFT_00977 -1.0 -2.3 hypothetical protein compare
H281DRAFT_05830 -1.0 -1.3 hypothetical protein compare
H281DRAFT_02543 -0.9 -2.8 GntR family transcriptional regulator compare
H281DRAFT_00465 -0.9 -1.4 PAS/PAC sensor signal transduction histidine kinase /multi-sensor signal transduction histidine kinase compare
H281DRAFT_04826 -0.9 -2.2 rhamnosyltransferase compare
H281DRAFT_02695 -0.9 -2.2 transcriptional regulator, HxlR family compare
H281DRAFT_04474 -0.9 -4.9 RND family efflux transporter, MFP subunit compare
H281DRAFT_03783 -0.9 -2.5 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains compare
H281DRAFT_00853 -0.9 -1.3 3-oxoacyl-[acyl-carrier-protein] reductase /acetoacetyl-CoA reductase compare
H281DRAFT_03184 -0.9 -1.2 cation diffusion facilitator family transporter compare
H281DRAFT_00163 -0.9 -4.6 glucokinase /transcriptional regulator, RpiR family compare
H281DRAFT_03702 -0.9 -1.5 transcriptional regulator, MarR family compare
H281DRAFT_00848 -0.9 -1.6 ribosomal large subunit pseudouridine synthase D (EC 5.4.99.-) compare
H281DRAFT_02424 -0.9 -4.8 Phenylacetate-coenzyme A ligase PaaK, adenylate-forming domain family compare
H281DRAFT_00852 -0.9 -3.0 acetyl-CoA acetyltransferase compare
H281DRAFT_04051 -0.9 -2.0 transcriptional regulator, RpiR family compare
H281DRAFT_01927 -0.9 -6.4 RNA polymerase, sigma 54 subunit, RpoN/SigL compare
H281DRAFT_02007 -0.8 -5.8 phosphoenolpyruvate--protein phosphotransferase compare
H281DRAFT_04153 -0.8 -2.7 xylulokinase compare
H281DRAFT_02137 -0.8 -2.9 type I restriction enzyme M protein compare
H281DRAFT_06008 -0.8 -5.2 RNA polymerase, sigma 70 subunit, RpoD compare
H281DRAFT_04476 -0.8 -5.0 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
H281DRAFT_05399 -0.8 -1.3 isoquinoline 1-oxidoreductase, alpha subunit compare
H281DRAFT_01990 -0.8 -4.8 cytochrome c oxidase subunit 3 compare
H281DRAFT_04889 -0.8 -1.4 hypothetical protein compare
H281DRAFT_00658 -0.8 -1.8 transcriptional regulator, IclR family compare
H281DRAFT_00109 -0.8 -2.4 hypothetical protein compare
H281DRAFT_03775 -0.8 -1.6 protein of unknown function (DUF4399) compare
H281DRAFT_05102 -0.8 -2.7 ribosome maturation factor RimP compare
H281DRAFT_02355 -0.8 -5.6 type II secretion system protein E (GspE) compare
H281DRAFT_04694 -0.8 -3.6 heat-inducible transcription repressor HrcA compare
H281DRAFT_03616 -0.8 -3.2 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
H281DRAFT_03525 -0.8 -2.1 cold-shock DNA-binding protein family compare
H281DRAFT_01633 -0.8 -2.4 hypothetical protein compare
H281DRAFT_01587 -0.8 -1.9 amino acid/amide ABC transporter membrane protein 1, HAAT family /amino acid/amide ABC transporter membrane protein 2, HAAT family compare
H281DRAFT_02350 -0.8 -3.5 general secretion pathway protein I compare
H281DRAFT_05157 -0.8 -1.4 allantoin racemase compare
H281DRAFT_01993 -0.8 -4.2 cytochrome c oxidase subunit 1 compare
H281DRAFT_02693 -0.8 -2.1 transcriptional regulator, DeoR family compare
H281DRAFT_03346 -0.8 -1.3 Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family compare
H281DRAFT_04627 -0.8 -2.9 Enoyl-CoA hydratase compare
H281DRAFT_04922 -0.8 -1.6 iron complex transport system permease protein compare
H281DRAFT_01986 -0.8 -2.8 cytochrome c oxidase assembly protein subunit 15 compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source p-Coumaric acid in Paraburkholderia bryophila 376MFSha3.1

For carbon source p-Coumaric acid across organisms