Experiment set6IT033 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

p-Coumaric acid carbon source

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_01275 +1.5 6.2 MFS transporter, AAHS family, 3-hydroxyphenylpropionic acid transporter compare
H281DRAFT_03820 +1.2 2.7 methylated-DNA-[protein]-cysteine S-methyltransferase compare
H281DRAFT_01274 +1.1 6.0 Outer membrane protein (porin) compare
H281DRAFT_04391 +1.1 9.8 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_05438 +1.0 2.8 transcriptional regulator, IclR family compare
H281DRAFT_04390 +1.0 7.5 ATP-binding cassette, subfamily B compare
H281DRAFT_01107 +0.9 2.5 hypothetical protein compare
H281DRAFT_03228 +0.9 2.1 carbohydrate ABC transporter ATP-binding protein, CUT1 family compare
H281DRAFT_03572 +0.9 3.6 Crotonobetainyl-CoA:carnitine CoA-transferase CaiB compare
H281DRAFT_05382 +0.9 2.2 diguanylate cyclase (GGDEF) domain-containing protein compare
H281DRAFT_05293 +0.8 2.4 amino acid ABC transporter ATP-binding protein, PAAT family compare
H281DRAFT_03448 +0.8 1.5 Predicted ester cyclase compare
H281DRAFT_06388 +0.8 2.8 Sugar phosphate permease compare
H281DRAFT_01108 +0.8 2.3 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_03837 +0.8 2.5 hypothetical protein compare
H281DRAFT_04218 +0.8 1.9 hypothetical protein compare
H281DRAFT_01441 +0.8 1.7 two component heavy metal response transcriptional regulator, winged helix family compare
H281DRAFT_03764 +0.8 2.7 ribulose-bisphosphate carboxylase large chain compare
H281DRAFT_03396 +0.8 2.0 AraC-type DNA-binding protein compare
H281DRAFT_00248 +0.8 1.7 hypothetical protein compare
H281DRAFT_01237 +0.8 1.4 DnaJ-class molecular chaperone with C-terminal Zn finger domain compare
H281DRAFT_01101 +0.8 2.8 Small-conductance mechanosensitive channel compare
H281DRAFT_05210 +0.7 1.7 Sugar phosphate isomerase/epimerase compare
H281DRAFT_06157 +0.7 1.8 hypothetical protein compare
H281DRAFT_01914 +0.7 5.0 Predicted PurR-regulated permease PerM compare
H281DRAFT_04269 +0.7 4.5 L-glutamate ABC transporter membrane protein /L-aspartate ABC transporter membrane protein compare
H281DRAFT_03460 +0.7 1.5 Protein of unknown function (DUF2950) compare
H281DRAFT_06367 +0.7 2.0 pilus assembly protein CpaE compare
H281DRAFT_04875 +0.7 2.5 Nucleoside-diphosphate-sugar epimerase compare
H281DRAFT_04837 +0.7 5.6 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family compare
H281DRAFT_01668 +0.7 1.6 gamma-aminobutyrate:proton symporter, AAT family compare
H281DRAFT_00254 +0.7 4.5 DNA (cytosine-5)-methyltransferase 1 compare
H281DRAFT_03884 +0.7 2.6 RND family efflux transporter, MFP subunit compare
H281DRAFT_06197 +0.7 1.5 hypothetical protein compare
H281DRAFT_01088 +0.7 1.6 Lactate dehydrogenase compare
H281DRAFT_05476 +0.7 1.4 Short-chain dehydrogenase compare
H281DRAFT_02692 +0.7 1.7 nudix-type nucleoside diphosphatase, YffH/AdpP family compare
H281DRAFT_03340 +0.7 1.8 hypothetical protein compare
H281DRAFT_01689 +0.6 1.3 transcriptional regulator, AraC family with amidase-like domain compare
H281DRAFT_00051 +0.6 1.4 hypothetical protein compare
H281DRAFT_05649 +0.6 2.8 transcriptional regulator, BolA protein family compare
H281DRAFT_01705 +0.6 2.2 aliphatic nitrilase compare
H281DRAFT_03367 +0.6 1.2 electron transfer flavoprotein alpha subunit apoprotein compare
H281DRAFT_04400 +0.6 5.5 membrane-bound lytic murein transglycosylase D compare
H281DRAFT_01717 +0.6 1.8 L-alanine-DL-glutamate epimerase compare
H281DRAFT_05985 +0.6 2.7 Predicted integral membrane protein compare
H281DRAFT_02610 +0.6 2.9 methyl-accepting chemotaxis sensory transducer with Cache sensor compare
H281DRAFT_04611 +0.6 2.8 Diadenosine tetraphosphate (Ap4A) hydrolase compare
H281DRAFT_01242 +0.6 0.9 CDP-diacylglycerol pyrophosphatase compare
H281DRAFT_01324 +0.6 1.6 formylmethanofuran dehydrogenase, subunit B compare
H281DRAFT_03266 +0.6 1.3 Nicotinamidase-related amidase compare
H281DRAFT_01709 +0.6 2.1 hypothetical protein compare
H281DRAFT_02968 +0.6 1.7 amidase compare
H281DRAFT_01477 +0.6 2.6 protein CcmA, bactofilin family compare
H281DRAFT_05251 +0.6 2.5 Type IV secretory pathway, VirJ component compare
H281DRAFT_05962 +0.6 1.3 RraA famliy compare
H281DRAFT_01299 +0.6 2.2 methylene-tetrahydromethanopterin dehydrogenase compare
H281DRAFT_02058 +0.6 1.0 cholesterol transport system auxiliary component compare
H281DRAFT_05075 +0.6 1.2 hypothetical protein compare
H281DRAFT_03221 +0.6 1.9 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_05012 +0.6 1.1 hypothetical protein compare
H281DRAFT_05516 +0.6 1.9 enoyl-CoA hydratase compare
H281DRAFT_01314 +0.6 1.8 D-fructose 1,6-bisphosphatase (EC 3.1.3.11) compare
H281DRAFT_06510 +0.6 1.4 methyl-accepting chemotaxis protein compare
H281DRAFT_04369 +0.6 2.0 Uncharacterized conserved protein YjbJ, UPF0337 family compare
H281DRAFT_05774 +0.6 2.1 flagellar biosynthetic protein FliR compare
H281DRAFT_01599 +0.6 1.0 GTP cyclohydrolase I compare
H281DRAFT_01236 +0.6 1.9 Protein-tyrosine-phosphatase compare
H281DRAFT_03400 +0.6 2.2 cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein (EC 1.10.3.10) compare
H281DRAFT_00315 +0.6 3.4 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_02549 +0.6 1.5 putative oxidoreductase compare
H281DRAFT_03356 +0.5 2.1 glycerate dehydrogenase compare
H281DRAFT_04594 +0.5 1.8 putative oxepin-CoA hydrolase (EC 3.3.2.12) (from data) compare
H281DRAFT_04654 +0.5 1.4 NAD(P) transhydrogenase subunit alpha compare
H281DRAFT_01746 +0.5 2.0 D-3-phosphoglycerate dehydrogenase compare
H281DRAFT_02985 +0.5 1.5 copper chaperone compare
H281DRAFT_00761 +0.5 2.3 molybdenum-pterin binding domain-containing protein compare
H281DRAFT_00769 +0.5 0.7 hypothetical protein compare
H281DRAFT_02060 +0.5 2.1 phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein compare
H281DRAFT_06377 +0.5 3.0 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_00653 +0.5 2.5 Enoyl-CoA hydratase/carnithine racemase compare
H281DRAFT_03351 +0.5 2.0 transcriptional regulator, IclR family compare
H281DRAFT_02784 +0.5 1.8 Uncharacterized conserved protein YecE, DUF72 family compare
H281DRAFT_06034 +0.5 2.4 Protein of unknown function (DUF3563) compare
H281DRAFT_03399 +0.5 1.9 cytochrome bd-I ubiquinol oxidase subunit 2 apoprotein (EC 1.10.3.10) compare
H281DRAFT_02910 +0.5 1.5 conserved hypothetical protein compare
H281DRAFT_03390 +0.5 1.6 H+/Cl- antiporter ClcA compare
H281DRAFT_03977 +0.5 2.9 (3S)-malyl-CoA thioesterase compare
H281DRAFT_01831 +0.5 1.5 DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain compare
H281DRAFT_03849 +0.5 2.0 protein of unknown function (DUF4863) compare
H281DRAFT_01095 +0.5 1.8 Glyoxylase, beta-lactamase superfamily II compare
H281DRAFT_05744 +0.5 1.9 methyl-accepting chemotaxis sensory transducer with TarH sensor compare
H281DRAFT_03859 +0.5 2.1 hypothetical protein compare
H281DRAFT_06041 +0.5 2.2 Tautomerase enzyme compare
H281DRAFT_01923 +0.5 2.6 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) compare
H281DRAFT_04433 +0.5 1.1 Undecaprenyl-diphosphatase compare
H281DRAFT_05478 +0.5 2.8 hypothetical protein compare
H281DRAFT_00488 +0.5 2.1 exonuclease RecJ compare
H281DRAFT_04268 +0.5 3.4 L-glutamate ABC transporter membrane protein /L-aspartate ABC transporter membrane protein compare
H281DRAFT_04759 +0.5 2.1 hypothetical protein compare
H281DRAFT_05768 +0.5 1.7 flagellar L-ring protein precursor FlgH compare
H281DRAFT_03855 +0.5 2.3 Sugar phosphate isomerase/epimerase compare
H281DRAFT_00375 +0.5 0.9 benzoyl-CoA oxygenase, component A compare
H281DRAFT_01125 +0.5 1.2 protein of unknown function (DUF2760) compare
H281DRAFT_05694 +0.5 2.1 two component transcriptional regulator, winged helix family compare
H281DRAFT_05190 +0.5 1.2 transcriptional regulator, TetR family compare
H281DRAFT_03638 +0.5 1.6 Cupin domain-containing protein compare
H281DRAFT_02634 +0.5 2.7 Beta-galactosidase compare
H281DRAFT_03771 +0.5 1.2 hypothetical protein compare
H281DRAFT_04676 +0.5 1.8 hypothetical protein compare
H281DRAFT_01374 +0.5 2.1 transcriptional regulator, GntR family compare
H281DRAFT_03901 +0.5 2.2 hypothetical protein compare
H281DRAFT_01220 +0.5 1.8 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_05949 +0.5 2.5 gluconolactonase compare
H281DRAFT_01105 +0.5 2.1 transcriptional regulator, AraC family compare
H281DRAFT_05689 +0.5 2.1 4-hydroxy-3-polyprenylbenzoate decarboxylase compare
H281DRAFT_00352 +0.5 1.2 transcriptional regulator, LysR family compare
H281DRAFT_05724 +0.5 3.0 3-oxo-5,6-didehydrosuberyl-CoA semialdehyde dehydrogenase PaaZ (EC:1.2.1.91) (from data) compare
H281DRAFT_03371 +0.5 1.3 outer membrane protein, multidrug efflux system compare
H281DRAFT_05888 +0.5 2.3 carbohydrate ABC transporter ATP-binding protein, CUT1 family compare
H281DRAFT_03198 +0.5 2.9 flagellar transcriptional activator FlhC compare
H281DRAFT_05339 +0.5 1.7 transcriptional regulator, GntR family compare
H281DRAFT_00976 +0.5 1.5 LysR family transcriptional regulator, glycine cleavage system transcriptional activator compare
H281DRAFT_01724 +0.5 2.6 methionine aminopeptidase, type I compare
H281DRAFT_04298 +0.5 0.9 Putative signal transducing protein compare
H281DRAFT_03199 +0.5 2.4 flagellar transcriptional activator FlhD compare
H281DRAFT_01121 +0.5 0.8 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_05334 +0.5 1.3 Short-chain dehydrogenase compare
H281DRAFT_06583 +0.5 0.8 2-haloacid dehalogenase compare
H281DRAFT_03069 +0.5 1.0 Uncharacterized conserved protein compare
H281DRAFT_01766 +0.5 1.7 cytochrome c oxidase subunit 2 compare
H281DRAFT_02579 +0.5 1.0 maleylacetate reductase compare
H281DRAFT_02958 +0.5 1.7 putative spermidine/putrescine transport system ATP-binding protein compare
H281DRAFT_02743 +0.5 1.2 protein of unknown function (DUF4148) compare
H281DRAFT_05351 +0.5 1.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
H281DRAFT_06098 +0.5 1.4 transcriptional regulator, RpiR family compare
H281DRAFT_03575 +0.4 1.5 hypothetical protein compare
H281DRAFT_01480 +0.4 1.1 4-hydroxy-tetrahydrodipicolinate synthase compare
H281DRAFT_00441 +0.4 2.0 hypothetical protein compare
H281DRAFT_03796 +0.4 1.7 protein of unknown function (DUF4148) compare
H281DRAFT_01648 +0.4 1.7 conserved hypothetical protein compare
H281DRAFT_01261 +0.4 1.9 putative spermidine/putrescine transport system permease protein compare
H281DRAFT_00927 +0.4 2.9 UPF0755 protein compare
H281DRAFT_01021 +0.4 1.6 Nitroreductase compare
H281DRAFT_06190 +0.4 0.8 DNA-binding protein H-NS compare
H281DRAFT_01246 +0.4 0.8 hypothetical protein compare
H281DRAFT_03885 +0.4 0.6 Protein of unknown function (DUF1656) compare
H281DRAFT_04359 +0.4 0.9 Glutaredoxin and related proteins compare
H281DRAFT_01706 +0.4 1.1 transcriptional regulator, MarR family compare
H281DRAFT_03192 +0.4 1.0 D-methionine transport system substrate-binding protein compare
H281DRAFT_01042 +0.4 1.2 glycosyltransferase, MSMEG_0565 family compare
H281DRAFT_06500 +0.4 0.6 Lactate dehydrogenase compare
H281DRAFT_05999 +0.4 2.7 hypothetical protein compare
H281DRAFT_03495 +0.4 1.6 transcriptional regulator, XRE family compare
H281DRAFT_00397 +0.4 1.3 GreA/GreB family elongation factor compare
H281DRAFT_03454 +0.4 1.0 Ribulose-5-phosphate 4-epimerase/Fuculose-1-phosphate aldolase compare
H281DRAFT_00695 +0.4 1.5 choline-sulfatase compare
H281DRAFT_03461 +0.4 1.2 Predicted membrane protein compare
H281DRAFT_03418 +0.4 0.8 3-hydroxyisobutyrate dehydrogenase compare
H281DRAFT_06081 +0.4 0.8 ubiquitin-hydrolase Zn-finger-containing protein compare
H281DRAFT_03305 +0.4 2.3 Acetyltransferases compare
H281DRAFT_01223 +0.4 1.0 monosaccharide ABC transporter ATP-binding protein, CUT2 family compare
H281DRAFT_03304 +0.4 1.1 amidohydrolase, PncC family compare
H281DRAFT_05381 +0.4 1.0 phosphonoacetate hydrolase compare
H281DRAFT_03297 +0.4 1.0 ADP-ribose pyrophosphatase YjhB, NUDIX family compare
H281DRAFT_00939 +0.4 2.0 hypothetical protein compare
H281DRAFT_05392 +0.4 2.7 hypothetical protein compare
H281DRAFT_01735 +0.4 2.1 two-component system, OmpR family, heavy metal sensor histidine kinase CusS compare
H281DRAFT_01215 +0.4 1.3 hypothetical protein compare
H281DRAFT_03883 +0.4 1.3 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
H281DRAFT_06272 +0.4 0.8 uncharacterized protein compare
H281DRAFT_01148 +0.4 1.0 DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain compare
H281DRAFT_00664 +0.4 1.4 assimilatory nitrate reductase (NADH) beta subunit (EC 1.7.1.1) compare
H281DRAFT_06517 +0.4 1.7 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_04898 +0.4 2.2 Predicted Zn-dependent protease or its inactivated homolog compare
H281DRAFT_05302 +0.4 0.9 FAD/FMN-containing dehydrogenase compare
H281DRAFT_01807 +0.4 2.0 transcriptional regulator, IclR family compare
H281DRAFT_06375 +0.4 1.2 hypothetical protein compare
H281DRAFT_05013 +0.4 1.8 type III secretion protein D compare
H281DRAFT_04816 +0.4 2.1 pyrimidine operon attenuation protein / uracil phosphoribosyltransferase compare
H281DRAFT_00964 +0.4 1.7 glc operon protein GlcG compare
H281DRAFT_05905 +0.4 1.3 hypothetical protein compare
H281DRAFT_00808 +0.4 2.0 Uncharacterized conserved protein, contains Mth938-like domain compare
H281DRAFT_02561 +0.4 1.9 NADP-dependent 3-hydroxy acid dehydrogenase YdfG compare
H281DRAFT_04593 +0.4 2.7 probable phosphoglycerate mutase compare
H281DRAFT_01232 +0.4 1.5 Predicted arabinose efflux permease, MFS family compare
H281DRAFT_04542 +0.4 1.6 hypothetical protein compare
H281DRAFT_05269 +0.4 1.8 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_06056 +0.4 2.8 histidine kinase (EC 2.7.13.3) compare
H281DRAFT_00540 +0.4 0.7 tRNA/rRNA methyltransferase compare
H281DRAFT_01730 +0.4 2.1 Predicted oxidoreductase compare
H281DRAFT_02577 +0.4 1.0 Sugar phosphate isomerase/epimerase compare
H281DRAFT_04250 +0.4 1.7 DNA-binding protein Fis compare
H281DRAFT_00554 +0.4 2.0 DUF971 family protein compare
H281DRAFT_01559 +0.4 2.8 alkylhydroperoxidase AhpD family core domain-containing protein compare
H281DRAFT_01509 +0.4 1.1 Uncharacterized conserved protein YgbK, DUF1537 family compare
H281DRAFT_03670 +0.4 1.1 High potential iron-sulfur protein compare
H281DRAFT_04246 +0.4 1.1 glutathione S-transferase compare
H281DRAFT_04713 +0.4 2.5 membrane-associated protein compare
H281DRAFT_00147 +0.4 0.9 uncharacterized domain 1-containing protein compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source p-Coumaric acid in Paraburkholderia bryophila 376MFSha3.1

For carbon source p-Coumaric acid across organisms