Experiment set6IT033 for Bifidobacterium breve UCC2003

Compare to:

Recovery broth at 32C

200 most detrimental genes:

  gene name fitness t score description  
BBR_RS19030 +1.1 10.7 LacI family transcriptional regulator compare
BBR_RS11675 +0.6 1.4 hypothetical protein compare
BBR_RS17190 +0.6 2.7 transcriptional regulator compare
BBR_RS15450 +0.6 1.8 dihydroorotate dehydrogenase compare
BBR_RS15795 +0.6 2.6 phosphoribosyl-ATP diphosphatase compare
BBR_RS13455 +0.6 1.8 formate-dependent phosphoribosylglycinamide formyltransferase compare
BBR_RS18645 +0.5 4.2 DNA-binding response regulator compare
BBR_RS14945 +0.5 3.2 peptidase E compare
BBR_RS14970 +0.5 1.4 transcriptional regulator compare
BBR_RS12370 +0.5 0.8 cell division protein compare
BBR_RS18175 +0.5 1.0 GTP cyclohydrolase I FolE compare
BBR_RS13960 +0.5 1.4 thiamine biosynthesis protein ThiS compare
BBR_RS15020 +0.5 1.5 membrane protein compare
BBR_RS16540 +0.5 2.7 XRE family transcriptional regulator compare
BBR_RS17775 +0.5 2.3 LacI family DNA-binding transcriptional regulator compare
BBR_RS14715 +0.5 1.3 XRE family transcriptional regulator compare
BBR_RS18170 +0.5 1.4 dihydropteroate synthase compare
BBR_RS12030 +0.4 2.2 F0F1 ATP synthase subunit epsilon compare
BBR_RS15155 +0.4 1.4 histidine triad nucleotide-binding protein compare
BBR_RS16985 +0.4 1.5 transcriptional repressor LexA compare
BBR_RS13335 +0.4 2.4 transcriptional repressor compare
BBR_RS14275 +0.4 0.8 30S ribosomal protein S1 compare
BBR_RS20870 +0.4 0.5 hypothetical protein compare
BBR_RS11715 +0.4 3.6 N-acetyltransferase compare
BBR_RS12245 +0.4 0.6 polyribonucleotide nucleotidyltransferase compare
BBR_RS14335 +0.4 1.7 hypothetical protein compare
BBR_RS19270 +0.4 0.6 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase compare
BBR_RS16820 +0.4 1.4 RNA polymerase sigma factor RpoE compare
BBR_RS15650 +0.4 1.1 Holliday junction resolvase compare
BBR_RS13750 +0.4 1.1 DivIVA domain-containing protein compare
BBR_RS18005 +0.4 2.9 hypothetical protein compare
BBR_RS13375 +0.4 2.2 phosphoribosylformylglycinamidine cyclo-ligase compare
BBR_RS17975 +0.4 2.4 very short patch repair endonuclease compare
BBR_RS14015 +0.4 1.4 hypothetical protein compare
BBR_RS15745 +0.4 1.4 hydrolase or phosphatase compare
BBR_RS14080 +0.4 1.2 hypothetical protein compare
BBR_RS16035 +0.4 1.2 hypothetical protein compare
BBR_RS13325 +0.4 1.8 hypothetical protein compare
BBR_RS21135 +0.4 2.4 hypothetical protein compare
BBR_RS19330 +0.4 1.6 hypothetical protein compare
BBR_RS15660 +0.4 1.7 Holliday junction branch migration DNA helicase RuvB compare
BBR_RS16015 +0.4 1.7 DUF2089 domain-containing protein compare
BBR_RS20085 +0.3 2.8 histidine phosphatase family protein compare
BBR_RS12940 +0.3 2.4 hypothetical protein compare
BBR_RS20730 +0.3 1.5 Crp/Fnr family transcriptional regulator compare
BBR_RS13450 +0.3 1.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BBR_RS13945 +0.3 1.2 Txe/YoeB family addiction module toxin compare
BBR_RS20875 +0.3 1.6 hypothetical protein compare
BBR_RS15415 +0.3 1.9 choloylglycine hydrolase compare
BBR_RS14700 +0.3 1.4 type II toxin-antitoxin system PemK/MazF family toxin compare
BBR_RS13445 +0.3 2.4 phosphoribosylformylglycinamidine synthase compare
BBR_RS15950 +0.3 1.8 ABC transporter ATP-binding protein compare
BBR_RS14480 +0.3 1.7 pyruvate formate-lyase 1-activating enzyme compare
BBR_RS12575 +0.3 1.2 hypothetical protein compare
BBR_RS14545 +0.3 1.9 TIGR00730 family Rossman fold protein compare
BBR_RS18130 +0.3 2.5 glucokinase compare
BBR_RS10755 +0.3 1.6 adenylosuccinate synthase compare
BBR_RS13320 +0.3 1.6 ABC transporter ATP-binding protein compare
BBR_RS14315 +0.3 1.7 DNA polymerase I compare
BBR_RS12500 +0.3 0.4 sugar ABC transporter permease compare
BBR_RS14590 +0.3 2.0 pyridoxine kinase compare
BBR_RS15915 +0.3 0.4 type II toxin-antitoxin system antitoxin, RelB/DinJ family compare
BBR_RS20135 +0.3 2.6 alpha-glucosidase compare
BBR_RS14040 +0.3 1.0 GNAT family N-acetyltransferase compare
BBR_RS17650 +0.3 1.0 cell filamentation protein Fic compare
BBR_RS17255 +0.3 1.9 ClbS/DfsB family four-helix bundle protein compare
BBR_RS12470 +0.3 2.4 long-chain fatty acid--CoA ligase compare
BBR_RS13125 +0.3 0.6 ABC transporter permease compare
BBR_RS12435 +0.3 2.3 ABC transporter ATP-binding protein compare
BBR_RS17465 +0.3 1.5 WXG100 family type VII secretion target compare
BBR_RS13310 +0.3 1.8 hypothetical protein compare
BBR_RS15410 +0.3 1.6 methylenetetrahydrofolate reductase [NAD(P)H] compare
BBR_RS18320 +0.3 1.7 hypothetical protein compare
BBR_RS14130 +0.2 0.3 septum formation initiator family protein compare
BBR_RS18640 +0.2 1.6 PspC domain-containing protein compare
BBR_RS20865 +0.2 0.7 glycogen phosphorylase compare
BBR_RS13165 +0.2 1.8 amino acid permease compare
BBR_RS20790 +0.2 1.3 hypothetical protein compare
BBR_RS18135 +0.2 1.1 hypothetical protein compare
BBR_RS14455 +0.2 1.4 ABC transporter permease compare
BBR_RS18530 +0.2 1.6 low molecular weight phosphotyrosine protein phosphatase compare
BBR_RS20655 +0.2 1.3 hypothetical protein compare
BBR_RS20710 +0.2 1.3 hypothetical protein compare
BBR_RS16275 +0.2 0.5 leucine--tRNA ligase compare
BBR_RS21070 +0.2 1.4 DNA-binding protein compare
BBR_RS14460 +0.2 1.5 amidohydrolase compare
BBR_RS20600 +0.2 1.7 hypothetical protein compare
BBR_RS14790 +0.2 1.7 phosphorylase compare
BBR_RS14285 +0.2 1.6 excinuclease ABC subunit UvrB compare
BBR_RS17085 +0.2 1.4 KR domain-containing protein compare
BBR_RS14220 +0.2 1.5 phosphomannomutase compare
BBR_RS15365 +0.2 1.4 alpha/beta hydrolase compare
BBR_RS13985 +0.2 0.9 membrane protein compare
BBR_RS14100 +0.2 1.9 UPF0182 family protein compare
BBR_RS14880 +0.2 1.4 ATP-dependent helicase compare
BBR_RS14120 +0.2 1.4 aldo/keto reductase compare
BBR_RS19825 +0.2 1.9 HD domain-containing protein compare
BBR_RS20965 +0.2 1.3 MFS transporter compare
BBR_RS16095 +0.2 1.4 imidazole glycerol phosphate synthase subunit HisF compare
BBR_RS14450 +0.2 1.5 methionine ABC transporter ATP-binding protein compare
BBR_RS19200 +0.2 1.9 hypothetical protein compare
BBR_RS15640 +0.2 1.2 HIT domain-containing protein compare
BBR_RS15445 +0.2 0.8 dihydroorotate dehydrogenase electron transfer subunit compare
BBR_RS16385 +0.2 1.0 hypothetical protein compare
BBR_RS14425 +0.2 1.4 histidine phosphatase family protein compare
BBR_RS13625 +0.2 0.8 transcription antitermination factor NusB compare
BBR_RS16720 +0.2 1.4 nicotinate-nucleotide diphosphorylase (carboxylating) compare
BBR_RS20735 +0.2 1.3 hypothetical protein compare
BBR_RS12560 +0.2 1.3 transposase compare
BBR_RS17945 +0.2 1.4 nucleoside deoxyribosyltransferase compare
BBR_RS17520 +0.2 1.2 hypothetical protein compare
BBR_RS17865 +0.2 0.8 MarR family transcriptional regulator compare
BBR_RS13990 +0.2 1.5 DUF975 domain-containing protein compare
BBR_RS14420 +0.2 1.0 ribosome silencing factor compare
BBR_RS17675 +0.2 1.5 ATP-binding protein compare
BBR_RS20715 +0.2 1.0 hypothetical protein compare
BBR_RS16510 +0.2 1.4 anthranilate phosphoribosyltransferase compare
BBR_RS15995 +0.2 1.3 two-component sensor histidine kinase compare
BBR_RS15570 +0.2 1.2 branched-chain amino acid transport system II carrier protein compare
BBR_RS12130 +0.2 1.5 sulfite exporter TauE/SafE family protein compare
BBR_RS15195 +0.2 1.4 NAD(P) transhydrogenase subunit beta compare
BBR_RS14630 +0.2 1.1 glutamine-binding protein glnH compare
BBR_RS10970 +0.2 1.4 pilus assembly protein TadE compare
BBR_RS16860 +0.2 1.4 N-acetylglucosamine-6-phosphate deacetylase compare
BBR_RS10345 +0.2 1.5 DNA starvation/stationary phase protection protein compare
BBR_RS21055 +0.2 0.8 hypothetical protein compare
BBR_RS16465 +0.2 1.1 ribokinase compare
BBR_RS11645 +0.2 0.8 integrase compare
BBR_RS16390 +0.2 1.2 Fic family protein compare
BBR_RS17610 +0.2 1.2 DedA family protein compare
BBR_RS11760 +0.2 1.6 integrase compare
BBR_RS15975 +0.2 1.0 hypothetical protein compare
BBR_RS20770 +0.2 0.5 30S ribosomal protein S14 compare
BBR_RS20740 +0.2 0.9 hypothetical protein compare
BBR_RS14840 +0.2 0.8 IS3 family transposase compare
BBR_RS13050 +0.2 1.4 ABC transporter substrate-binding protein compare
BBR_RS18425 +0.2 1.4 PcfB family protein compare
BBR_RS16330 +0.2 1.2 LacI family transcriptional regulator compare
BBR_RS12100 +0.2 1.4 ABC transporter permease compare
BBR_RS15085 +0.2 0.2 3-dehydroquinate synthase compare
BBR_RS14875 +0.2 1.2 uracil-xanthine permease compare
BBR_RS13600 +0.2 1.1 carbohydrate-binding protein compare
BBR_RS15150 +0.2 1.0 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
BBR_RS19005 +0.2 1.5 hypothetical protein compare
BBR_RS20665 +0.2 0.8 hypothetical protein compare
BBR_RS18105 +0.2 1.2 hypothetical protein compare
BBR_RS16025 +0.2 1.0 hypothetical protein compare
BBR_RS20250 +0.2 1.2 transcriptional regulator compare
BBR_RS15190 +0.2 0.9 NAD(P) transhydrogenase subunit alpha compare
BBR_RS16505 +0.2 1.0 hypothetical protein compare
BBR_RS11555 +0.2 1.4 AarF/ABC1/UbiB kinase family protein compare
BBR_RS16005 +0.2 1.0 ABC transporter compare
BBR_RS17570 +0.2 1.1 ribulose-phosphate 3-epimerase compare
BBR_RS13195 +0.2 1.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS compare
BBR_RS19885 +0.2 1.4 ABC transporter permease compare
BBR_RS20925 +0.2 0.2 amino acid permease compare
BBR_RS15910 +0.2 1.1 ABC transporter substrate-binding protein compare
BBR_RS10700 +0.2 1.2 putative heavy metal-binding protein compare
BBR_RS15560 +0.2 0.9 aminotransferase class V-fold PLP-dependent enzyme compare
BBR_RS11735 +0.2 1.3 LacI family transcriptional regulator compare
BBR_RS18100 +0.2 1.2 lincomycin resistance protein LmrB compare
BBR_RS14685 +0.2 0.7 YccF domain-containing protein compare
BBR_RS11220 +0.2 1.3 YbhB/YbcL family Raf kinase inhibitor-like protein compare
BBR_RS19890 +0.1 1.4 ABC transporter permease compare
BBR_RS13275 +0.1 1.2 hypothetical protein compare
BBR_RS19240 +0.1 1.3 LacI family transcriptional regulator compare
BBR_RS17070 +0.1 1.2 hypothetical protein compare
BBR_RS14005 +0.1 1.0 haloacid dehalogenase compare
BBR_RS19635 +0.1 1.3 IclR family transcriptional regulator compare
BBR_RS19205 +0.1 1.4 Evolved beta-galactosidase subunit alpha compare
BBR_RS18025 +0.1 1.2 AmmeMemoRadiSam system radical SAM enzyme compare
BBR_RS16310 +0.1 1.0 hypothetical protein compare
BBR_RS12855 +0.1 0.9 glycine cleavage system protein H compare
BBR_RS12960 +0.1 1.2 DUF58 domain-containing protein compare
BBR_RS19830 +0.1 1.3 class II glutamine amidotransferase compare
BBR_RS11550 +0.1 1.0 hypothetical protein compare
BBR_RS18985 +0.1 1.4 4-alpha-glucanotransferase compare
BBR_RS17220 +0.1 0.9 thiamine-binding protein compare
BBR_RS14800 +0.1 0.9 glucosamine-6-phosphate deaminase compare
BBR_RS14710 +0.1 0.8 hypothetical protein compare
BBR_RS18440 +0.1 0.8 hypothetical protein compare
BBR_RS15985 +0.1 1.0 IS30 family transposase compare
BBR_RS19010 +0.1 1.3 glycoside hydrolase family 1 protein compare
BBR_RS15135 +0.1 1.1 glucose-1-phosphate adenylyltransferase compare
BBR_RS16165 +0.1 0.7 M23 family peptidase compare
BBR_RS19910 +0.1 1.3 hypothetical protein compare
BBR_RS15515 +0.1 1.1 excinuclease ABC subunit UvrC compare
BBR_RS15905 +0.1 1.0 ABC transporter ATP-binding protein compare
BBR_RS15815 +0.1 1.1 tryptophan synthase subunit beta compare
BBR_RS17180 +0.1 1.1 ABC transporter ATP-binding protein compare
BBR_RS12845 +0.1 1.1 alpha/beta hydrolase compare
BBR_RS16730 +0.1 1.1 quinolinate synthase NadA compare
BBR_RS13715 +0.1 0.7 DUF3107 domain-containing protein compare
BBR_RS11890 +0.1 0.9 DUF624 domain-containing protein compare
BBR_RS16180 +0.1 0.9 IS21 family transposase compare
BBR_RS13610 +0.1 0.9 iron export ABC transporter permease subunit FetB compare
BBR_RS15895 +0.1 0.7 hypothetical protein compare
BBR_RS13550 +0.1 0.9 DUF47 domain-containing protein compare
BBR_RS13140 +0.1 1.0 cysteine synthase compare
BBR_RS19520 +0.1 0.8 DUF1778 domain-containing protein compare


Specific Phenotypes

None in this experiment

For Bifidobacterium breve UCC2003 in temperature experiments