Experiment set6IT032 for Phaeobacter inhibens DSM 17395

Compare to:

marine broth with Zinc sulfate heptahydrate 0.1 mM

200 most detrimental genes:

  gene name fitness t score description  
PGA1_c35920 +1.9 3.9 thiamine kinase ThiK-like protein compare
PGA1_c24220 +1.7 4.9 ornithine carbamoyltransferase ArgF compare
PGA1_c11540 +1.6 2.6 gamma-glutamylputrescine synthetase PuuA compare
PGA1_c17050 +1.6 4.5 N-acetyl-gamma-glutamyl-phosphate reductase ArgC compare
PGA1_c33190 +1.5 8.7 putative anti-sigma-B factor antagonist compare
PGA1_c24230 +1.3 6.2 acetylornithine aminotransferase ArgD compare
PGA1_c04010 +1.2 2.3 putative universal stress protein compare
PGA1_c08590 +1.2 8.6 heme NO binding domain-containing protein compare
PGA1_c12550 +1.2 2.6 hypothetical protein compare
PGA1_262p01600 +1.1 2.7 putative ABC transporter, ATP binding protein compare
PGA1_c08600 +1.1 8.6 diguanylate cyclase (GGDEF) domain-containing protein compare
PGA1_c34880 +1.1 9.3 putative response regulator compare
PGA1_c06420 +1.1 4.1 acetyltransferase domain-containing protein compare
PGA1_262p00660 +1.0 3.0 Predicted periplasmic protein compare
PGA1_78p00060 +1.0 2.1 Uncharacterized protein conserved in bacteria compare
PGA1_c19200 +1.0 2.5 Predicted Fe-S protein compare
PGA1_c34890 +1.0 7.1 putative histidine-containing phosphotransfer protein compare
PGA1_78p00490 +1.0 1.6 putative HTH-type transcriptional regulator compare
PGA1_c34480 +1.0 2.1 UTP--glucose-1-phosphate uridylyltransferase CelA compare
PGA1_65p00450 +1.0 1.9 UDP-glucose 6-dehydrogenase Ugd compare
PGA1_c24770 +0.9 1.5 putative leucine-responsive regulatory protein compare
PGA1_c18630 +0.9 2.8 hypothetical protein compare
PGA1_c15380 +0.9 1.4 Uncharacterized conserved protein compare
PGA1_c19100 +0.9 1.7 hypothetical protein compare
PGA1_c05730 +0.9 3.4 putative methylated-DNA--protein-cysteine methyltransferase compare
PGA1_c17790 +0.9 1.5 putative gene transfer agent protein compare
PGA1_c29000 +0.8 2.3 inner membrane lipoprotein compare
PGA1_c24560 +0.8 5.1 carbamoyl-phosphate synthase large chain compare
PGA1_262p00590 +0.8 2.5 Protein of unknown function (DUF2886). compare
PGA1_262p01800 +0.8 3.1 putative membrane dipeptidase compare
PGA1_c30900 +0.8 2.1 hypothetical protein compare
PGA1_262p02170 +0.8 1.4 putative chemoreceptor glutamine deamidase CheD compare
PGA1_c17030 +0.7 1.8 peptidoglycan binding domain-containing protein compare
PGA1_c31230 +0.7 1.9 hypothetical protein compare
PGA1_262p00560 +0.7 1.8 uracil DNA glycosylase-like protein compare
PGA1_c00610 +0.7 0.9 acetyltransferase, GNAT family compare
PGA1_78p00170 +0.7 1.4 putative sn-glycerol-3-phosphate transport system permease protein UgpA compare
PGA1_c17680 +0.7 1.4 hypothetical protein compare
PGA1_c02050 +0.7 1.5 acetylglutamate kinase ArgB compare
PGA1_c11710 +0.7 3.4 transcriptional regulator, LysR family compare
PGA1_c18580 +0.7 2.3 hypothetical protein compare
PGA1_c20140 +0.7 3.5 putative arginine-tRNA-protein transferase compare
PGA1_262p01620 +0.7 1.9 Uncharacterized protein conserved in bacteria compare
PGA1_262p01300 +0.7 1.9 Cupin domain. compare
PGA1_262p00250 +0.7 2.0 ferritin-like protein compare
PGA1_78p00140 +0.7 1.1 Sugar phosphate isomerases/epimerases compare
PGA1_c02440 +0.7 5.1 putative ATP-binding/permease fusion ABC transporter compare
PGA1_65p00380 +0.7 1.8 hypothetical protein compare
PGA1_c34650 +0.6 1.1 UPF0090 protein YhbC compare
PGA1_c29670 +0.6 2.1 small heat shock protein IbpA compare
PGA1_c02460 +0.6 5.3 hypothetical protein compare
PGA1_262p00570 +0.6 2.3 hypothetical protein compare
PGA1_c08900 +0.6 3.7 putative capsule polysaccharide export protein KpsS compare
PGA1_65p00280 +0.6 1.2 Protein of unknown function (DUF2793)./Domain of unknown function (DUF3476). compare
PGA1_c31880 +0.6 5.6 signal transduction histidine kinase compare
PGA1_78p00560 +0.6 1.5 Uncharacterized conserved protein compare
PGA1_c10270 +0.6 3.8 hypothetical protein compare
PGA1_262p01780 +0.6 1.8 transcriptional regulator, LysR family compare
PGA1_c29900 +0.6 1.6 protein slyX-like protein compare
PGA1_262p01390 +0.6 1.2 hypothetical protein compare
PGA1_262p00740 +0.6 2.7 putative peptidase, family M20/M25/M40 compare
PGA1_c14960 +0.6 2.0 putative transcriptional regulator compare
PGA1_c02450 +0.6 4.5 putative outer membrane efflux protein compare
PGA1_c23480 +0.6 1.8 putative D-beta-hydroxybutyrate dehydrogenase compare
PGA1_65p00070 +0.6 0.7 putative regulatory protein, LuxR family compare
PGA1_c15260 +0.6 1.2 protein recA (recombinase A) compare
PGA1_78p00510 +0.6 1.3 multidrug transporter MdtB compare
PGA1_c06670 +0.6 2.1 carbamoyl-phosphate synthase small chain compare
PGA1_c18550 +0.6 3.0 hypothetical protein compare
PGA1_c14190 +0.6 3.5 putative transcriptional regulator, AraC family compare
PGA1_c24310 +0.6 3.3 putative capsular polysaccharide transport system, ATP-binding protein compare
PGA1_c15330 +0.5 1.2 hypothetical protein compare
PGA1_c20290 +0.5 3.0 putative N-acetylmuramoyl-L-alanine amidase AmiC compare
PGA1_c20310 +0.5 2.9 putative metalloprotease compare
PGA1_262p00420 +0.5 2.2 Transcriptional regulator/sugar kinase compare
PGA1_78p00540 +0.5 1.2 hypothetical protein compare
PGA1_c27890 +0.5 2.2 Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) (from data) compare
PGA1_c08550 +0.5 1.8 Protein of unknown function (DUF3572). compare
PGA1_c25990 +0.5 1.1 hypothetical protein compare
PGA1_c27900 +0.5 1.9 ligand-binding UTRA domain-containing protein compare
PGA1_262p00270 +0.5 1.9 transcriptional regulator, GntR family compare
PGA1_c10830 +0.5 1.9 colicin V production protein-like protein compare
PGA1_262p00310 +0.5 1.5 glutathione transport system permease protein GsiC compare
PGA1_262p01400 +0.5 2.4 dimethylglycine dehydrogenase DmgdH compare
PGA1_c13430 +0.5 2.1 C4-dicarboxylate transport sensor protein DctB compare
PGA1_c13050 +0.5 2.0 Zn-dependent hydrolases, including glyoxylases compare
PGA1_c02030 +0.5 1.2 phosphoglycerate mutase-like protein compare
PGA1_c11170 +0.5 1.3 segregation and condensation protein A compare
PGA1_c15250 +0.5 2.1 hypothetical protein compare
PGA1_262p00840 +0.5 2.2 hypothetical protein compare
PGA1_c29040 +0.5 2.1 endonuclease III compare
PGA1_c15640 +0.5 2.5 transcriptional regulator, IclR family compare
PGA1_c05390 +0.5 1.8 glycosyl transferase compare
PGA1_c17870 +0.5 1.8 hypothetical protein compare
PGA1_c16420 +0.5 1.4 putative phospholipase / carboxylesterase compare
PGA1_c06170 +0.5 2.1 hypothetical protein compare
PGA1_c09870 +0.5 2.2 hypothetical protein compare
PGA1_c17220 +0.5 1.7 hypothetical protein compare
PGA1_c22240 +0.5 1.1 hypothetical protein compare
PGA1_c15200 +0.5 1.1 ATP-dependent reduction of co(II)balamin (RamA-like) (EC:2.1.1.13) (from data) compare
PGA1_c02430 +0.5 3.0 type I secretion membrane fusion protein, HlyD family compare
PGA1_c08450 +0.5 1.3 Predicted membrane protein (DUF2061). compare
PGA1_262p01120 +0.4 0.6 hypothetical protein compare
PGA1_c05180 +0.4 1.6 Predicted small integral membrane protein compare
PGA1_262p00750 +0.4 1.2 Threonine dehydratase compare
PGA1_c22900 +0.4 1.5 putative type IV secretion system protein VirB9 compare
PGA1_c07490 +0.4 0.4 Putative sterol carrier protein compare
PGA1_c03950 +0.4 2.4 putative permease protein compare
PGA1_c19140 +0.4 1.4 sarcosine oxidase-like protein compare
PGA1_c23800 +0.4 2.4 hypothetical protein compare
PGA1_c31730 +0.4 2.6 hypothetical protein compare
PGA1_c12770 +0.4 0.5 hypothetical protein compare
PGA1_c13930 +0.4 2.3 hypothetical protein compare
PGA1_c16680 +0.4 2.1 sugar ABC transporter, ATP-binding protein compare
PGA1_c24820 +0.4 1.8 phenazine biosynthesis protein compare
PGA1_c33970 +0.4 1.9 putative chloramphenicol phosphotransferase-like protein compare
PGA1_c27150 +0.4 2.2 TRAP transporter, subunit DctQ compare
PGA1_c09830 +0.4 1.8 hypothetical protein compare
PGA1_c02960 +0.4 1.9 Predicted acetyltransferase compare
PGA1_c11930 +0.4 1.9 Cytidine deaminase (EC 3.5.4.5) (from data) compare
PGA1_262p01165 +0.4 0.8 hypothetical protein compare
PGA1_c00950 +0.4 2.3 Protein of unknown function (DUF3429). compare
PGA1_c20320 +0.4 1.3 Protein-disulfide isomerase compare
PGA1_c27920 +0.4 2.3 N-acetylmuramic acid 6-phosphate etherase MurQ compare
PGA1_c11280 +0.4 2.4 Putative hemolysin compare
PGA1_c11410 +0.4 1.8 putative integral membrane protein compare
PGA1_c22480 +0.4 2.3 hypothetical protein compare
PGA1_c15130 +0.4 1.7 hypothetical protein compare
PGA1_c23000 +0.4 0.8 hypothetical protein compare
PGA1_c29370 +0.4 1.1 putative toluene tolerance protein, Ttg2 family compare
PGA1_c34770 +0.4 2.3 Uncharacterized protein conserved in bacteria compare
PGA1_c02780 +0.4 2.7 Membrane-bound metallopeptidase compare
PGA1_c08755 +0.4 1.8 sarcosine oxidase subunit delta compare
PGA1_c20820 +0.4 1.7 Predicted periplasmic or secreted protein compare
PGA1_c24500 +0.4 1.8 putative signal transduction response regulator receiver compare
PGA1_c13020 +0.4 2.1 signal transduction histidine kinase compare
PGA1_c29500 +0.4 1.4 NUDIX hydrolase-like protein compare
PGA1_c08300 +0.4 1.8 hypothetical protein compare
PGA1_c04700 +0.4 2.5 hypothetical protein compare
PGA1_c24160 +0.4 1.0 hypothetical protein compare
PGA1_c35850 +0.4 1.2 flagellar biosynthesis repressor FlbT compare
PGA1_c22500 +0.4 1.1 hypothetical protein compare
PGA1_c03170 +0.4 1.3 hypothetical protein compare
PGA1_c16920 +0.4 0.8 molybdenum cofactor biosynthesis protein C compare
PGA1_c15810 +0.4 2.1 pyridoxal phosphate-dependent enzyme, cysteine / methionine metabolism compare
PGA1_c25960 +0.4 1.6 putative biopolymer transport protein compare
PGA1_c23210 +0.4 1.4 hypothetical protein compare
PGA1_c13890 +0.4 1.3 Predicted enzyme related to lactoylglutathione lyase compare
PGA1_c34970 +0.4 2.1 peptide methionine sulfoxide reductase MsrA compare
PGA1_c22870 +0.4 2.6 lytic transglycosylase-like protein compare
PGA1_262p01540 +0.4 0.9 putative enoyl-CoA hydratase / isomerase compare
PGA1_c19780 +0.4 1.4 clan AA aspartic protease, TIGR02281 family compare
PGA1_c35480 +0.4 2.2 glycerol-3-phosphate dehydrogenase GpsA compare
PGA1_c16240 +0.4 2.2 methylthioribose-1-phosphate isomerase MtnA compare
PGA1_c25570 +0.4 3.1 putative glycine betaine transport system, substrate binding protein compare
PGA1_c24390 +0.4 1.1 Uncharacterized protein conserved in bacteria compare
PGA1_c09250 +0.4 1.6 Protein of unknown function (DUF2867). compare
PGA1_c36440 +0.4 1.8 Domain of unknown function (DU1801). compare
PGA1_c18340 +0.4 1.1 putative baseplate assembly protein W compare
PGA1_c16480 +0.4 1.9 putative outer membrane protein compare
PGA1_c33220 +0.4 1.6 hemimethylated DNA-binding protein, YccV-like compare
PGA1_c25820 +0.4 1.5 putative acetyltransferase, GNAT family compare
PGA1_c33060 +0.4 1.4 glyoxalase-like protein compare
PGA1_c21320 +0.4 1.7 TIGR02453 family protein compare
PGA1_262p02230 +0.4 0.6 zinc uptake regulation protein zur-like protein compare
PGA1_c15590 +0.4 3.2 putative transcriptional activator protein compare
PGA1_c34390 +0.4 1.8 spermidine/putrescine import ATP-binding protein PotA compare
PGA1_262p00680 +0.4 1.3 Uncharacterized membrane protein compare
PGA1_c15750 +0.4 1.6 phosphate import ATP-binding protein PstB compare
PGA1_c15660 +0.3 1.6 enoyl-CoA hydratase/isomerase family protein compare
PGA1_c22450 +0.3 2.0 hypothetical protein compare
PGA1_262p01760 +0.3 1.8 epoxide hydrolase, similar to eukaryotic compare
PGA1_c09640 +0.3 1.7 Protein of unknown function (DUF2484). compare
PGA1_262p01720 +0.3 1.6 putative glutathione transport system permease protein compare
PGA1_c18080 +0.3 1.6 hypothetical protein compare
PGA1_c29300 +0.3 2.3 Uncharacterized protein conserved in bacteria compare
PGA1_c02420 +0.3 1.7 V8-like Glu-specific endopeptidase compare
PGA1_c14770 +0.3 1.3 tRNA-dihydrouridine synthase DusB compare
PGA1_c17190 +0.3 1.8 Predicted membrane protein compare
PGA1_c25190 +0.3 1.9 hypothetical protein compare
PGA1_c30570 +0.3 1.1 Predicted metal-dependent hydrolase compare
PGA1_c08880 +0.3 2.4 capsule polysaccharide export protein KpsC compare
PGA1_262p00700 +0.3 0.4 stressosome protein rsbS-like protein compare
PGA1_c28790 +0.3 1.8 Predicted permeases compare
PGA1_c31570 +0.3 2.0 cytochrome c-like protein compare
PGA1_c10770 +0.3 1.5 5'-nucleotidase SurE compare
PGA1_c19640 +0.3 1.0 transcriptional regulator, containing response regulator domain compare
PGA1_c21800 +0.3 1.3 putative transporter compare
PGA1_c02230 +0.3 1.4 hypothetical protein compare
PGA1_c00490 +0.3 0.9 ATPases involved in chromosome partitioning compare
PGA1_c26720 +0.3 1.4 Predicted endonuclease distantly related to archaeal Holliday junction resolvase compare
PGA1_c13490 +0.3 2.0 putative cytochrome P450 compare
PGA1_c25020 +0.3 1.5 putative transcriptional regulator, LysR family compare
PGA1_c14890 +0.3 0.6 Uncharacterized conserved protein compare
PGA1_c20220 +0.3 1.2 acetolactate synthase isozyme 3 small subunit compare
PGA1_c07020 +0.3 1.9 Poly(3-hydroxybutyrate) depolymerase compare
PGA1_c23810 +0.3 1.5 Protein of unknown function (DUF2842). compare
PGA1_c13640 +0.3 1.2 Phosphopantetheine attachment site. compare
PGA1_c25560 +0.3 3.1 transcriptional regulator, LysR family compare
PGA1_c11970 +0.3 1.7 Sporulation related domain. compare


Specific Phenotypes

For 3 genes in this experiment

For stress Zinc sulfate heptahydrate in Phaeobacter inhibens DSM 17395

For stress Zinc sulfate heptahydrate across organisms