Experiment set6IT032 for Dechlorosoma suillum PS

Compare to:

ALP with Fusidic acid sodium salt 0.02 mg/ml

Group: stress
Media: ALP_richB + Fusidic acid sodium salt (0.02 mg/ml)
Culturing: PS_ML1, 48 well microplate; Tecan Infinite F200, Aerobic, at 25 (C), shaken=orbital
By: Mark on 4/20/2015
Media components: 0.97 g/L Sodium phosphate dibasic heptahydrate, 0.1 g/L Potassium Chloride, 0.25 g/L Ammonium chloride, 40 mM Sodium D,L-Lactate, 1.1 g/L Sodium pyruvate, 0.8203 g/L Sodium acetate, 2 g/L Yeast Extract, Wolfe's mineral mix (0.03 g/L Magnesium Sulfate Heptahydrate, 0.015 g/L Nitrilotriacetic acid, 0.01 g/L Sodium Chloride, 0.005 g/L Manganese (II) sulfate monohydrate, 0.001 g/L Cobalt chloride hexahydrate, 0.001 g/L Zinc sulfate heptahydrate, 0.001 g/L Calcium chloride dihydrate, 0.001 g/L Iron (II) sulfate heptahydrate, 0.00025 g/L Nickel (II) chloride hexahydrate, 0.0002 g/L Aluminum potassium sulfate dodecahydrate, 0.0001 g/L Copper (II) sulfate pentahydrate, 0.0001 g/L Boric Acid, 0.0001 g/L Sodium Molybdate Dihydrate, 0.003 mg/L Sodium selenite pentahydrate), Wolfe's vitamin mix (0.1 mg/L Pyridoxine HCl, 0.05 mg/L 4-Aminobenzoic acid, 0.05 mg/L Lipoic acid, 0.05 mg/L Nicotinic Acid, 0.05 mg/L Riboflavin, 0.05 mg/L Thiamine HCl, 0.05 mg/L calcium pantothenate, 0.02 mg/L biotin, 0.02 mg/L Folic Acid, 0.001 mg/L Cyanocobalamin)
Growth plate: 1214 F1,F2

Specific Phenotypes

For 21 genes in this experiment

For stress Fusidic acid sodium salt in Dechlorosoma suillum PS

For stress Fusidic acid sodium salt across organisms

SEED Subsystems

Subsystem #Specific
Heat shock dnaK gene cluster extended 2
ABC transporter branched-chain amino acid (TC 3.A.1.4.1) 1
Bacterial Chemotaxis 1
Cobalt-zinc-cadmium resistance 1
Conserved gene cluster associated with Met-tRNA formyltransferase 1
Flagellar motility 1
Glutaredoxins 1
Glutathione-regulated potassium-efflux system and associated functions 1
Heme and Siroheme Biosynthesis 1
Potassium homeostasis 1
Protein degradation 1
Queuosine-Archaeosine Biosynthesis 1
Ribosome biogenesis bacterial 1
Two-component regulatory systems in Campylobacter 1
Type IV pilus 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
pseudouridine degradation 2 1 1