Experiment set6IT032 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

Glycerol carbon source

200 most important genes:

  gene name fitness t score description  
H281DRAFT_05801 -6.9 -4.8 5,10-methylenetetrahydrofolate reductase (NAD(P)) compare
H281DRAFT_03926 -6.6 -11.0 phosphoserine aminotransferase apoenzyme compare
H281DRAFT_02214 -5.6 -18.1 homoserine O-acetyltransferase compare
H281DRAFT_06075 -5.6 -8.6 3-isopropylmalate dehydratase, large subunit compare
H281DRAFT_05713 -5.5 -8.5 anthranilate phosphoribosyltransferase compare
H281DRAFT_04974 -5.5 -6.7 aromatic-amino-acid transaminase compare
H281DRAFT_00909 -5.5 -6.2 phosphoribosylformylglycinamidine synthase compare
H281DRAFT_04553 -5.4 -6.5 ketol-acid reductoisomerase compare
H281DRAFT_06059 -5.4 -11.6 O-succinylhomoserine sulfhydrylase compare
H281DRAFT_04710 -5.3 -5.1 phosphoribosylformylglycinamidine cyclo-ligase compare
H281DRAFT_05620 -5.2 -18.4 glutamate synthase (NADH) large subunit compare
H281DRAFT_02065 -5.2 -3.6 rfaE bifunctional protein, domain II compare
H281DRAFT_05714 -5.0 -4.9 anthranilate synthase, component II compare
H281DRAFT_04610 -4.8 -16.8 Fe-S oxidoreductase compare
H281DRAFT_06073 -4.8 -3.4 3-isopropylmalate dehydratase, small subunit compare
H281DRAFT_06072 -4.7 -8.0 3-isopropylmalate dehydrogenase compare
H281DRAFT_06068 -4.7 -7.6 phosphoribosylanthranilate isomerase compare
H281DRAFT_06067 -4.7 -12.1 tryptophan synthase, beta chain compare
H281DRAFT_06065 -4.7 -8.4 tryptophan synthase, alpha chain compare
H281DRAFT_05715 -4.4 -16.7 anthranilate synthase, component I compare
H281DRAFT_02004 -4.4 -6.0 phosphoglycerate mutase compare
H281DRAFT_00115 -4.4 -3.0 Uncharacterized conserved protein, DUF934 family compare
H281DRAFT_00120 -4.3 -5.5 sirohydrochlorin cobaltochelatase compare
H281DRAFT_00117 -4.3 -8.2 sulfate adenylyltransferase subunit 2 compare
H281DRAFT_04120 -4.2 -5.9 argininosuccinate synthase compare
H281DRAFT_04679 -4.0 -3.8 pyrroline-5-carboxylate reductase compare
H281DRAFT_04119 -4.0 -7.7 ornithine carbamoyltransferase compare
H281DRAFT_00860 -4.0 -1.6 phosphoserine phosphatase compare
H281DRAFT_00116 -3.9 -2.6 phosphoadenylylsulfate reductase (thioredoxin) compare
H281DRAFT_06060 -3.9 -5.0 amidophosphoribosyltransferase compare
H281DRAFT_02215 -3.8 -3.7 methionine biosynthesis protein MetW compare
H281DRAFT_05712 -3.8 -4.2 indole-3-glycerol phosphate synthase compare
H281DRAFT_00197 -3.7 -12.1 Phosphoenolpyruvate carboxylase, type 1 compare
H281DRAFT_06264 -3.6 -3.8 glutamate 5-kinase compare
H281DRAFT_00194 -3.6 -3.7 argininosuccinate lyase compare
H281DRAFT_06315 -3.4 -1.8 glyceraldehyde-3-phosphate dehydrogenase (NAD+) compare
H281DRAFT_03925 -3.4 -7.6 chorismate mutase compare
H281DRAFT_04229 -3.3 -10.6 glycerol kinase compare
H281DRAFT_04082 -3.3 -5.9 ATP-dependent Clp protease ATP-binding subunit ClpA compare
H281DRAFT_02205 -3.2 -2.3 transcriptional regulator, TraR/DksA family compare
H281DRAFT_00286 -3.1 -4.5 transaldolase compare
H281DRAFT_04228 -2.9 -8.5 homodimeric glycerol 3-phosphate dehydrogenase (quinone) compare
H281DRAFT_00114 -2.8 -4.5 sulfite reductase (NADPH) beta subunit compare
H281DRAFT_04719 -2.8 -5.2 TolB protein compare
H281DRAFT_00118 -2.8 -5.4 sulfate adenylyltransferase subunit 1 compare
H281DRAFT_02926 -2.7 -9.7 diguanylate cyclase/phosphodiesterase compare
H281DRAFT_05618 -2.5 -8.6 outer membrane protein compare
H281DRAFT_01889 -2.2 -3.2 7-cyano-7-deazaguanine reductase compare
H281DRAFT_04278 -2.2 -10.1 6-phosphogluconate dehydratase compare
H281DRAFT_00113 -1.9 -3.4 transcriptional regulator, LysR family compare
H281DRAFT_03006 -1.8 -7.0 transcriptional regulator, GntR family compare
H281DRAFT_01798 -1.8 -2.2 Transmembrane transcriptional regulator (anti-sigma factor RsiW) compare
H281DRAFT_04635 -1.7 -2.5 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) compare
H281DRAFT_00290 -1.7 -2.7 Cytochrome c553 compare
H281DRAFT_04850 -1.7 -2.5 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase compare
H281DRAFT_00405 -1.6 -1.9 Predicted small secreted protein compare
H281DRAFT_00395 -1.6 -7.3 hydroxymethylpyrimidine synthase compare
H281DRAFT_04075 -1.6 -5.1 formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase compare
H281DRAFT_04195 -1.6 -2.3 heptosyltransferase-2 compare
H281DRAFT_05621 -1.5 -1.8 glutamate synthase (NADH) small subunit compare
H281DRAFT_04388 -1.5 -0.8 trehalose 6-phosphatase (EC 3.1.3.12) compare
H281DRAFT_01002 -1.4 -1.9 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ compare
H281DRAFT_03266 -1.4 -1.7 Nicotinamidase-related amidase compare
H281DRAFT_00886 -1.4 -3.6 two component transcriptional regulator, winged helix family compare
H281DRAFT_05085 -1.4 -2.4 DNA helicase/exodeoxyribonuclease V, gamma subunit compare
H281DRAFT_04831 -1.4 -3.2 hypothetical protein compare
H281DRAFT_05494 -1.4 -1.5 DNA-binding transcriptional regulator, GntR family compare
H281DRAFT_04070 -1.3 -4.9 nicotinate-nucleotide pyrophosphorylase [carboxylating] compare
H281DRAFT_00663 -1.3 -1.1 assimilatory nitrite reductase (NAD(P)H) small subunit (EC 1.7.1.4) compare
H281DRAFT_00842 -1.3 -4.2 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
H281DRAFT_05087 -1.3 -2.4 exodeoxyribonuclease V alpha subunit compare
H281DRAFT_02201 -1.3 -1.9 hypothetical protein compare
H281DRAFT_05324 -1.2 -2.6 tripartite ATP-independent transporter solute receptor, DctP family compare
H281DRAFT_03745 -1.2 -2.3 carbohydrate ABC transporter membrane protein 2, CUT1 family compare
H281DRAFT_00444 -1.2 -1.1 N-acetylglutamate synthase compare
H281DRAFT_00176 -1.2 -1.4 outer membrane lipoprotein carrier protein compare
H281DRAFT_06581 -1.2 -2.8 NADP-dependent 3-hydroxy acid dehydrogenase YdfG compare
H281DRAFT_02566 -1.2 -2.2 Glycine/D-amino acid oxidase (deaminating) compare
H281DRAFT_04189 -1.2 -3.2 pyruvate kinase compare
H281DRAFT_01111 -1.2 -1.6 transcriptional regulator, DeoR family compare
H281DRAFT_06480 -1.1 -2.5 arginine succinyltransferase compare
H281DRAFT_04889 -1.1 -1.8 hypothetical protein compare
H281DRAFT_04606 -1.1 -1.3 threonine ammonia-lyase, biosynthetic, long form compare
H281DRAFT_04071 -1.1 -6.7 quinolinate synthetase compare
H281DRAFT_05469 -1.1 -1.9 transcriptional regulator, IclR family compare
H281DRAFT_04826 -1.1 -3.1 rhamnosyltransferase compare
H281DRAFT_01990 -1.1 -6.2 cytochrome c oxidase subunit 3 compare
H281DRAFT_00841 -1.0 -1.4 hypothetical protein compare
H281DRAFT_01836 -1.0 -1.6 hypothetical protein compare
H281DRAFT_04848 -1.0 -2.2 hypothetical protein compare
H281DRAFT_02581 -1.0 -1.2 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_05086 -1.0 -1.3 DNA helicase/exodeoxyribonuclease V, beta subunit compare
H281DRAFT_01883 -1.0 -1.1 putative addiction module antidote protein, CC2985 family compare
H281DRAFT_00559 -1.0 -1.2 hypothetical protein compare
H281DRAFT_01985 -1.0 -5.0 protoheme IX farnesyltransferase compare
H281DRAFT_01390 -1.0 -1.6 hypothetical protein compare
H281DRAFT_04849 -1.0 -1.0 UDP-glucose 4-epimerase compare
H281DRAFT_00317 -1.0 -4.6 O-antigen ligase compare
H281DRAFT_04356 -1.0 -1.1 anti sigma-E protein, RseA compare
H281DRAFT_04683 -1.0 -5.1 glycolate oxidase compare
H281DRAFT_03634 -1.0 -1.8 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin subunit compare
H281DRAFT_03931 -1.0 -3.2 phosphoglycolate phosphatase compare
H281DRAFT_03409 -0.9 -1.5 Protein of unknown function (DUF3072) compare
H281DRAFT_04415 -0.9 -1.2 phosphate uptake regulator, PhoU compare
H281DRAFT_04399 -0.9 -2.6 hydroxyacylglutathione hydrolase compare
H281DRAFT_06310 -0.9 -3.3 Barstar (barnase inhibitor) compare
H281DRAFT_06445 -0.9 -1.1 Molybdopterin synthase catalytic subunit compare
H281DRAFT_04707 -0.9 -3.6 HAD-superfamily subfamily IB hydrolase, TIGR01490 compare
H281DRAFT_03751 -0.9 -1.5 transcriptional regulator, IclR family compare
H281DRAFT_06468 -0.9 -2.2 Ribulose-5-phosphate 4-epimerase/Fuculose-1-phosphate aldolase compare
H281DRAFT_00175 -0.9 -3.0 DNA translocase FtsK compare
H281DRAFT_06266 -0.9 -3.7 putative (di)nucleoside polyphosphate hydrolase compare
H281DRAFT_01684 -0.9 -2.8 transcriptional regulator, TetR family compare
H281DRAFT_05022 -0.9 -1.6 two component transcriptional regulator, LuxR family compare
H281DRAFT_06008 -0.9 -4.3 RNA polymerase, sigma 70 subunit, RpoD compare
H281DRAFT_04672 -0.9 -2.4 ATP-dependent DNA helicase RecG compare
H281DRAFT_01965 -0.9 -1.8 hypothetical protein compare
H281DRAFT_04694 -0.9 -3.9 heat-inducible transcription repressor HrcA compare
H281DRAFT_00165 -0.9 -3.1 glucose-6-phosphate 1-dehydrogenase compare
H281DRAFT_06518 -0.9 -2.7 hypothetical protein compare
H281DRAFT_00471 -0.8 -4.7 transcriptional regulator, IclR family compare
H281DRAFT_05648 -0.8 -3.9 ABC-2 type transport system permease protein compare
H281DRAFT_01986 -0.8 -4.9 cytochrome c oxidase assembly protein subunit 15 compare
H281DRAFT_04611 -0.8 -1.2 Diadenosine tetraphosphate (Ap4A) hydrolase compare
H281DRAFT_03154 -0.8 -2.1 two-component system, NarL family, sensor kinase compare
H281DRAFT_04069 -0.8 -6.1 L-aspartate oxidase compare
H281DRAFT_04844 -0.8 -4.6 Glycosyltransferase, GT2 family compare
H281DRAFT_01413 -0.8 -1.2 hypothetical protein compare
H281DRAFT_00529 -0.8 -2.9 KUP system potassium uptake protein compare
H281DRAFT_05815 -0.8 -3.3 5,10-methenyltetrahydrofolate synthetase compare
H281DRAFT_00563 -0.8 -1.9 microcin C transport system ATP-binding protein compare
H281DRAFT_04680 -0.8 -1.0 hypothetical protein compare
H281DRAFT_01183 -0.8 -1.5 Sugar lactone lactonase YvrE compare
H281DRAFT_04835 -0.8 -1.4 hypothetical protein compare
H281DRAFT_01309 -0.8 -3.2 dihydropteroate synthase-related protein compare
H281DRAFT_00123 -0.8 -2.5 aminopeptidase A. Metallo peptidase. MEROPS family M17 compare
H281DRAFT_04236 -0.8 -2.1 Predicted ring-cleavage extradiol dioxygenase compare
H281DRAFT_04681 -0.8 -4.0 glycolate oxidase iron-sulfur subunit compare
H281DRAFT_01726 -0.8 -2.0 transcriptional regulator, TetR family compare
H281DRAFT_06363 -0.8 -2.2 hypothetical protein compare
H281DRAFT_04562 -0.8 -1.5 polyribonucleotide nucleotidyltransferase compare
H281DRAFT_02410 -0.8 -2.5 glycine cleavage system H protein compare
H281DRAFT_03583 -0.7 -1.5 hypothetical protein compare
H281DRAFT_05609 -0.7 -1.1 penicillin-binding protein 1A compare
H281DRAFT_00608 -0.7 -2.9 UTP--GlnB (protein PII) uridylyltransferase, GlnD compare
H281DRAFT_02701 -0.7 -1.3 dihydroxyacetone kinase, C-terminal domain compare
H281DRAFT_05074 -0.7 -2.4 protease I compare
H281DRAFT_02036 -0.7 -2.5 Thiol-disulfide isomerase or thioredoxin compare
H281DRAFT_00291 -0.7 -1.2 Cytochrome c553 compare
H281DRAFT_00840 -0.7 -3.4 5'-nucleotidase /3'-nucleotidase /exopolyphosphatase compare
H281DRAFT_02368 -0.7 -2.8 two component transcriptional regulator, winged helix family compare
H281DRAFT_02231 -0.7 -0.9 7-carboxy-7-deazaguanine synthase, Cx14CxxC type compare
H281DRAFT_04362 -0.7 -3.1 RNAse III (EC 3.1.26.3) compare
H281DRAFT_06127 -0.7 -2.1 hypothetical protein compare
H281DRAFT_00072 -0.7 -2.1 hypothetical protein compare
H281DRAFT_01993 -0.7 -4.0 cytochrome c oxidase subunit 1 compare
H281DRAFT_01067 -0.7 -1.0 NitT/TauT family transport system ATP-binding protein compare
H281DRAFT_01811 -0.7 -1.3 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_00172 -0.7 -1.4 DNA-nicking endonuclease, Smr domain compare
H281DRAFT_04643 -0.7 -2.8 methylmalonyl-CoA epimerase compare
H281DRAFT_01935 -0.7 -2.8 Tetratricopeptide repeat-containing protein compare
H281DRAFT_05346 -0.7 -2.1 Glutathione S-transferase compare
H281DRAFT_03159 -0.7 -1.0 hypothetical protein compare
H281DRAFT_04619 -0.7 -3.9 Uncharacterized membrane protein compare
H281DRAFT_06135 -0.7 -1.2 hypothetical protein compare
H281DRAFT_03902 -0.7 -1.8 RNA polymerase, sigma 70 subunit, RpoD compare
H281DRAFT_01187 -0.7 -1.0 short chain enoyl-CoA hydratase (EC 4.2.1.17) compare
H281DRAFT_01297 -0.7 -1.3 pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) compare
H281DRAFT_02559 -0.7 -1.7 hypothetical protein compare
H281DRAFT_02981 -0.7 -4.4 aconitase /2-methylcitrate dehydratase (trans-methylaconitate-forming) compare
H281DRAFT_04640 -0.7 -1.5 dimethyladenosine transferase compare
H281DRAFT_00530 -0.7 -1.5 uncharacterized protein compare
H281DRAFT_03641 -0.7 -1.4 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_06350 -0.7 -2.0 hypothetical protein compare
H281DRAFT_01088 -0.6 -1.1 Lactate dehydrogenase compare
H281DRAFT_05991 -0.6 -2.1 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase compare
H281DRAFT_04851 -0.6 -2.1 NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC compare
H281DRAFT_02856 -0.6 -1.2 Protein of unknown function (DUF1488) compare
H281DRAFT_01968 -0.6 -3.5 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
H281DRAFT_01994 -0.6 -4.2 cytochrome c oxidase subunit 2 compare
H281DRAFT_03383 -0.6 -2.4 Aerobic-type carbon monoxide dehydrogenase, small subunit, CoxS/CutS family compare
H281DRAFT_01101 -0.6 -1.7 Small-conductance mechanosensitive channel compare
H281DRAFT_01222 -0.6 -1.0 monosaccharide ABC transporter membrane protein, CUT2 family compare
H281DRAFT_03240 -0.6 -1.8 pyruvate dehydrogenase (quinone) compare
H281DRAFT_05601 -0.6 -1.2 hypothetical protein compare
H281DRAFT_03002 -0.6 -2.0 hypothetical protein compare
H281DRAFT_04515 -0.6 -0.8 RNAse G compare
H281DRAFT_03585 -0.6 -1.4 Polyisoprenoid-binding protein YceI compare
H281DRAFT_02411 -0.6 -2.4 aminomethyltransferase compare
H281DRAFT_03188 -0.6 -2.2 Acetyl esterase/lipase compare
H281DRAFT_01827 -0.6 -1.0 hypothetical protein compare
H281DRAFT_01235 -0.6 -2.7 DNA-binding protein H-NS compare
H281DRAFT_03815 -0.6 -1.3 D-glucarate dehydratase compare
H281DRAFT_01399 -0.6 -1.3 arsenite efflux membrane protein ArsB compare
H281DRAFT_04682 -0.6 -2.8 glycolate oxidase FAD binding subunit compare
H281DRAFT_01065 -0.6 -1.2 NitT/TauT family transport system substrate-binding protein compare
H281DRAFT_03703 -0.6 -1.5 NADP-dependent 3-hydroxy acid dehydrogenase YdfG compare
H281DRAFT_04064 -0.6 -1.6 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
H281DRAFT_02508 -0.6 -1.6 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_04455 -0.6 -2.4 Protein of unknown function (DUF2993) compare


Specific Phenotypes

None in this experiment

For Paraburkholderia bryophila 376MFSha3.1 in carbon source experiments

For carbon source Glycerol across organisms