Experiment set6IT032 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

Glycerol carbon source

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_02007 +1.7 15.6 phosphoenolpyruvate--protein phosphotransferase compare
H281DRAFT_01125 +1.2 3.2 protein of unknown function (DUF2760) compare
H281DRAFT_05561 +1.2 6.4 transcriptional regulator, TetR family compare
H281DRAFT_04880 +1.1 2.4 PRC-barrel domain-containing protein compare
H281DRAFT_05667 +1.0 7.4 serine protease DegQ compare
H281DRAFT_04482 +1.0 1.9 NAD(P)H dehydrogenase (quinone) compare
H281DRAFT_04391 +0.9 7.5 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_03820 +0.9 1.9 methylated-DNA-[protein]-cysteine S-methyltransferase compare
H281DRAFT_02753 +0.9 3.0 Predicted dehydrogenase compare
H281DRAFT_03572 +0.9 2.1 Crotonobetainyl-CoA:carnitine CoA-transferase CaiB compare
H281DRAFT_04875 +0.9 3.1 Nucleoside-diphosphate-sugar epimerase compare
H281DRAFT_01382 +0.9 2.6 Cellulose biosynthesis protein BcsR compare
H281DRAFT_06437 +0.8 2.8 FdhD protein compare
H281DRAFT_05075 +0.8 2.7 hypothetical protein compare
H281DRAFT_00199 +0.8 2.8 uroporphyrinogen III methyltransferase / synthase compare
H281DRAFT_06003 +0.8 2.6 Pimeloyl-ACP methyl ester carboxylesterase compare
H281DRAFT_06562 +0.8 1.9 hypothetical protein compare
H281DRAFT_00298 +0.8 1.7 hypothetical protein compare
H281DRAFT_00819 +0.8 1.6 competence protein ComEA compare
H281DRAFT_06459 +0.8 2.2 flagellar motor switch protein FliG compare
H281DRAFT_04390 +0.7 5.4 ATP-binding cassette, subfamily B compare
H281DRAFT_05157 +0.7 1.9 allantoin racemase compare
H281DRAFT_05123 +0.7 2.0 hypothetical protein compare
H281DRAFT_04931 +0.7 2.1 Surfactin synthase thioesterase subunit compare
H281DRAFT_03835 +0.7 1.3 NitT/TauT family transport system permease protein compare
H281DRAFT_05744 +0.7 1.8 methyl-accepting chemotaxis sensory transducer with TarH sensor compare
H281DRAFT_05915 +0.7 1.9 hypothetical protein compare
H281DRAFT_00236 +0.7 4.1 sigma54 specific transcriptional regulator, Fis family compare
H281DRAFT_06165 +0.7 2.8 hypothetical protein compare
H281DRAFT_05273 +0.7 1.3 Predicted arabinose efflux permease, MFS family compare
H281DRAFT_01021 +0.7 1.4 Nitroreductase compare
H281DRAFT_03118 +0.7 2.1 NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase compare
H281DRAFT_06427 +0.7 1.6 Molecular chaperone IbpA, HSP20 family compare
H281DRAFT_01514 +0.7 2.2 ribose 1,5-bisphosphokinase compare
H281DRAFT_01108 +0.7 1.9 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_01007 +0.7 2.8 hypothetical protein compare
H281DRAFT_01670 +0.7 4.0 Enoyl-CoA hydratase/carnithine racemase compare
H281DRAFT_01257 +0.6 1.9 Catechol 2,3-dioxygenase compare
H281DRAFT_00375 +0.6 0.6 benzoyl-CoA oxygenase, component A compare
H281DRAFT_06041 +0.6 3.4 Tautomerase enzyme compare
H281DRAFT_04100 +0.6 2.7 Protein of unknown function (DUF2917) compare
H281DRAFT_05563 +0.6 1.0 Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC compare
H281DRAFT_03108 +0.6 1.5 hypothetical protein compare
H281DRAFT_03413 +0.6 2.5 high affinity sulphate transporter 1 compare
H281DRAFT_06563 +0.6 1.8 hypothetical protein compare
H281DRAFT_05908 +0.6 2.2 hypothetical protein compare
H281DRAFT_00390 +0.6 1.9 Beta-barrel assembly machine subunit BamC compare
H281DRAFT_05281 +0.6 1.2 triphosphoribosyl-dephospho-CoA synthase compare
H281DRAFT_02224 +0.6 2.0 rod shape-determining protein MreC compare
H281DRAFT_04051 +0.6 1.2 transcriptional regulator, RpiR family compare
H281DRAFT_04942 +0.6 2.8 Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family compare
H281DRAFT_03822 +0.6 2.0 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_01799 +0.6 1.9 RNA polymerase sigma-70 factor, ECF subfamily compare
H281DRAFT_03883 +0.6 2.3 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
H281DRAFT_04896 +0.6 1.2 transcriptional regulator, AraC family with amidase-like domain compare
H281DRAFT_05476 +0.6 1.7 Short-chain dehydrogenase compare
H281DRAFT_01547 +0.6 3.0 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_04179 +0.6 3.1 two-component system, OmpR family, sensor kinase compare
H281DRAFT_04544 +0.6 1.2 diacylglycerol kinase (ATP) compare
H281DRAFT_06375 +0.6 1.7 hypothetical protein compare
H281DRAFT_03868 +0.6 2.3 transcriptional regulator, XRE family with cupin sensor compare
H281DRAFT_03324 +0.6 2.3 Low affinity Fe/Cu permease compare
H281DRAFT_00378 +0.6 2.2 glutamate synthase (NADPH/NADH) small chain compare
H281DRAFT_04359 +0.6 1.3 Glutaredoxin and related proteins compare
H281DRAFT_03917 +0.6 1.7 Uncharacterized integral membrane protein compare
H281DRAFT_00917 +0.6 2.4 acetyl-CoA C-acetyltransferase compare
H281DRAFT_05269 +0.6 1.8 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_03296 +0.6 1.3 hypothetical protein compare
H281DRAFT_03220 +0.6 2.0 4-hydroxy-tetrahydrodipicolinate synthase compare
H281DRAFT_04855 +0.6 1.2 hypothetical protein compare
H281DRAFT_02058 +0.6 0.9 cholesterol transport system auxiliary component compare
H281DRAFT_06583 +0.6 2.8 2-haloacid dehalogenase compare
H281DRAFT_05737 +0.6 2.0 flagellar transcriptional activator FlhD compare
H281DRAFT_00888 +0.6 1.7 phytoene synthase compare
H281DRAFT_05321 +0.6 3.0 uronate dehydrogenase compare
H281DRAFT_01321 +0.6 1.7 probable H4MPT-linked C1 transfer pathway protein compare
H281DRAFT_03534 +0.5 4.1 transcriptional regulator, IclR family compare
H281DRAFT_01480 +0.5 1.8 4-hydroxy-tetrahydrodipicolinate synthase compare
H281DRAFT_02592 +0.5 1.1 fumarase, class II compare
H281DRAFT_00893 +0.5 2.1 DNA-binding transcriptional regulator, MarR family compare
H281DRAFT_03985 +0.5 2.6 Beta-ketoacyl synthase, N-terminal domain compare
H281DRAFT_05534 +0.5 1.3 Zn-dependent dipeptidase, dipeptidase homolog compare
H281DRAFT_05146 +0.5 1.9 methyltransferase, TIGR00027 family compare
H281DRAFT_05632 +0.5 1.2 hypothetical protein compare
H281DRAFT_04691 +0.5 4.2 glutamate-ammonia-ligase adenylyltransferase compare
H281DRAFT_02008 +0.5 3.7 phosphocarrier protein compare
H281DRAFT_00773 +0.5 2.3 nodulation factor export ABC transporter ATP-binding protein NodI compare
H281DRAFT_01632 +0.5 4.0 LuxR family transcriptional regulator, quorum-sensing transcription factor LasR compare
H281DRAFT_00601 +0.5 1.8 Permease of the drug/metabolite transporter (DMT) superfamily compare
H281DRAFT_00721 +0.5 1.4 putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase compare
H281DRAFT_02571 +0.5 1.2 amino acid ABC transporter substrate-binding protein, PAAT family compare
H281DRAFT_05210 +0.5 1.1 Sugar phosphate isomerase/epimerase compare
H281DRAFT_06500 +0.5 1.0 Lactate dehydrogenase compare
H281DRAFT_03396 +0.5 1.3 AraC-type DNA-binding protein compare
H281DRAFT_02685 +0.5 2.7 Uncharacterized damage-inducible protein DinB (forms a four-helix bundle) compare
H281DRAFT_02931 +0.5 2.8 Uncharacterized conserved protein YodC, DUF2158 family compare
H281DRAFT_03996 +0.5 1.7 chorismate mutase (EC 5.4.99.5) compare
H281DRAFT_06536 +0.5 2.0 rare lipoprotein A compare
H281DRAFT_02950 +0.5 1.7 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_03199 +0.5 3.1 flagellar transcriptional activator FlhD compare
H281DRAFT_05536 +0.5 1.2 hypothetical protein compare
H281DRAFT_02643 +0.5 1.2 hypothetical protein compare
H281DRAFT_00010 +0.5 1.5 nitrile hydratase compare
H281DRAFT_01262 +0.5 1.2 putative spermidine/putrescine transport system permease protein compare
H281DRAFT_03978 +0.5 2.3 histidine ammonia-lyase compare
H281DRAFT_04790 +0.5 1.7 hypothetical protein compare
H281DRAFT_05248 +0.5 0.7 hypothetical protein compare
H281DRAFT_03341 +0.5 2.8 Predicted arabinose efflux permease, MFS family compare
H281DRAFT_05537 +0.5 0.9 transcriptional regulator, IclR family compare
H281DRAFT_02633 +0.5 3.1 beta-galactosidase compare
H281DRAFT_05438 +0.5 1.2 transcriptional regulator, IclR family compare
H281DRAFT_04628 +0.5 1.6 FdhD protein compare
H281DRAFT_03120 +0.5 1.7 putative spermidine/putrescine transport system permease protein compare
H281DRAFT_02349 +0.5 2.4 general secretion pathway protein J compare
H281DRAFT_05879 +0.5 1.5 DNA-binding transcriptional regulator, MarR family compare
H281DRAFT_06296 +0.5 1.7 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_00690 +0.5 1.5 NADPH:quinone reductase compare
H281DRAFT_04033 +0.5 2.0 YggT family protein compare
H281DRAFT_05039 +0.5 2.2 Acetyltransferase (GNAT) domain-containing protein compare
H281DRAFT_05049 +0.5 1.4 hypothetical protein compare
H281DRAFT_04250 +0.5 1.6 DNA-binding protein Fis compare
H281DRAFT_03775 +0.5 0.9 protein of unknown function (DUF4399) compare
H281DRAFT_05486 +0.5 1.7 hypothetical protein compare
H281DRAFT_02803 +0.5 1.0 thioredoxin 1 compare
H281DRAFT_02600 +0.5 1.0 Undecaprenyl-diphosphatase (EC 3.6.1.27) compare
H281DRAFT_05950 +0.5 2.6 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_05778 +0.5 1.3 flagellar motor switch protein FliN/FliY compare
H281DRAFT_04372 +0.5 2.5 hypothetical protein compare
H281DRAFT_01029 +0.5 1.4 peptide/nickel transport system permease protein compare
H281DRAFT_01033 +0.5 1.1 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_02276 +0.5 2.6 ParB-like nuclease domain-containing protein compare
H281DRAFT_06190 +0.5 0.8 DNA-binding protein H-NS compare
H281DRAFT_03953 +0.5 1.6 hypothetical protein compare
H281DRAFT_06056 +0.5 3.6 histidine kinase (EC 2.7.13.3) compare
H281DRAFT_02734 +0.5 1.2 YXWGXW repeat-containing protein compare
H281DRAFT_01028 +0.5 0.9 peptide/nickel transport system permease protein compare
H281DRAFT_04795 +0.5 2.1 hypothetical protein compare
H281DRAFT_00409 +0.5 0.9 bacterioferritin compare
H281DRAFT_01584 +0.5 0.9 enamidase compare
H281DRAFT_04346 +0.5 1.2 uncharacterized protein compare
H281DRAFT_06578 +0.5 2.2 NADP-dependent 3-hydroxy acid dehydrogenase YdfG compare
H281DRAFT_00704 +0.5 2.1 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) compare
H281DRAFT_04089 +0.5 2.5 Uncharacterized protein, RmlC-like cupin domain compare
H281DRAFT_00726 +0.5 2.0 acyl-CoA dehydrogenase compare
H281DRAFT_01142 +0.5 1.3 2,5-furandicarboxylate decarboxylase 2 compare
H281DRAFT_00254 +0.5 3.7 DNA (cytosine-5)-methyltransferase 1 compare
H281DRAFT_00352 +0.5 1.2 transcriptional regulator, LysR family compare
H281DRAFT_03878 +0.5 1.5 xylose ABC transporter ATP-binding protein compare
H281DRAFT_02755 +0.5 1.9 Uncharacterized membrane protein compare
H281DRAFT_04176 +0.5 2.6 Uncharacterized conserved protein, DUF427 family compare
H281DRAFT_01238 +0.5 1.5 FMN reductase compare
H281DRAFT_03972 +0.5 2.4 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_03166 +0.5 2.7 Protein of unknown function (DUF2894) compare
H281DRAFT_04607 +0.5 1.2 hypothetical protein compare
H281DRAFT_06032 +0.5 1.5 peroxiredoxin, Ohr subfamily compare
H281DRAFT_05382 +0.5 1.4 diguanylate cyclase (GGDEF) domain-containing protein compare
H281DRAFT_05507 +0.4 1.6 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_01285 +0.4 1.2 ATP adenylyltransferase compare
H281DRAFT_03372 +0.4 1.7 hypothetical protein compare
H281DRAFT_04820 +0.4 1.8 Bis(5'nucleosyl)-tetraphosphatase, ApaH compare
H281DRAFT_02351 +0.4 3.0 general secretion pathway protein H compare
H281DRAFT_02787 +0.4 1.1 Acetyltransferase involved in cellulose biosynthesis, CelD/BcsL family compare
H281DRAFT_02052 +0.4 0.5 hypothetical protein compare
H281DRAFT_01279 +0.4 2.0 Nicotinamidase-related amidase compare
H281DRAFT_04582 +0.4 2.4 ADP-ribose pyrophosphatase compare
H281DRAFT_04735 +0.4 1.4 Membrane-anchored ribosome-binding protein, inhibits growth in stationary phase, ElaB/YqjD/DUF883 family compare
H281DRAFT_03418 +0.4 1.4 3-hydroxyisobutyrate dehydrogenase compare
H281DRAFT_06371 +0.4 1.9 TadE-like protein compare
H281DRAFT_05981 +0.4 1.2 transcriptional regulator, LysR family compare
H281DRAFT_00128 +0.4 2.0 transcriptional regulator, LysR family compare
H281DRAFT_00808 +0.4 1.4 Uncharacterized conserved protein, contains Mth938-like domain compare
H281DRAFT_06120 +0.4 0.9 hypothetical protein compare
H281DRAFT_03577 +0.4 1.3 hypothetical protein compare
H281DRAFT_03352 +0.4 1.2 Polyketide cyclase / dehydrase and lipid transport compare
H281DRAFT_01906 +0.4 1.0 cytochrome c oxidase subunit 2 compare
H281DRAFT_02443 +0.4 0.9 alkylhydroperoxidase AhpD family core domain-containing protein compare
H281DRAFT_03986 +0.4 1.8 Putative Ca2+/H+ antiporter, TMEM165/GDT1 family compare
H281DRAFT_00972 +0.4 1.6 lactaldehyde dehydrogenase / glycolaldehyde dehydrogenase compare
H281DRAFT_02230 +0.4 1.6 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase compare
H281DRAFT_02280 +0.4 1.8 hypothetical protein compare
H281DRAFT_02556 +0.4 1.5 Outer membrane protein (porin) compare
H281DRAFT_00954 +0.4 2.2 GDPmannose 4,6-dehydratase compare
H281DRAFT_05381 +0.4 0.9 phosphonoacetate hydrolase compare
H281DRAFT_03364 +0.4 2.0 Crotonobetainyl-CoA:carnitine CoA-transferase CaiB compare
H281DRAFT_06035 +0.4 2.0 esterase, PHB depolymerase family compare
H281DRAFT_00125 +0.4 1.8 Protein of unknown function (DUF2486) compare
H281DRAFT_06555 +0.4 0.8 hypothetical protein compare
H281DRAFT_00676 +0.4 2.5 transcriptional regulator, LysR family compare
H281DRAFT_03083 +0.4 2.3 Redoxin compare
H281DRAFT_04781 +0.4 0.8 putative colanic acid biosynthesis acetyltransferase WcaF compare
H281DRAFT_04944 +0.4 1.8 transcriptional regulator, LysR family compare
H281DRAFT_03857 +0.4 2.0 MFS transporter, ACS family, D-galactonate transporter compare
H281DRAFT_01358 +0.4 1.5 Uncharacterized protein, RmlC-like cupin domain compare
H281DRAFT_04369 +0.4 1.4 Uncharacterized conserved protein YjbJ, UPF0337 family compare
H281DRAFT_02574 +0.4 1.5 Glycine/D-amino acid oxidase (deaminating) compare
H281DRAFT_05920 +0.4 1.5 transcriptional regulator, LacI family compare
H281DRAFT_01377 +0.4 0.9 hypothetical protein compare
H281DRAFT_01495 +0.4 1.9 NAD(P)H dehydrogenase (quinone) compare
H281DRAFT_03438 +0.4 2.5 polysaccharide transporter, PST family compare
H281DRAFT_04201 +0.4 0.7 O-antigen ligase compare


Specific Phenotypes

None in this experiment

For Paraburkholderia bryophila 376MFSha3.1 in carbon source experiments

For carbon source Glycerol across organisms