Experiment set6IT032 for Bifidobacterium breve UCC2003

Compare to:

Recovery broth at 32C

200 most detrimental genes:

  gene name fitness t score description  
BBR_RS19030 +1.2 10.9 LacI family transcriptional regulator compare
BBR_RS14080 +0.9 2.9 hypothetical protein compare
BBR_RS11675 +0.7 1.5 hypothetical protein compare
BBR_RS11715 +0.7 6.2 N-acetyltransferase compare
BBR_RS17775 +0.7 4.0 LacI family DNA-binding transcriptional regulator compare
BBR_RS16985 +0.6 2.2 transcriptional repressor LexA compare
BBR_RS13455 +0.6 2.0 formate-dependent phosphoribosylglycinamide formyltransferase compare
BBR_RS14130 +0.6 1.1 septum formation initiator family protein compare
BBR_RS20695 +0.5 2.3 hypothetical protein compare
BBR_RS15745 +0.5 2.0 hydrolase or phosphatase compare
BBR_RS14970 +0.5 1.8 transcriptional regulator compare
BBR_RS18045 +0.5 1.2 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BBR_RS19240 +0.5 4.4 LacI family transcriptional regulator compare
BBR_RS18795 +0.5 1.5 tRNA pseudouridine(38-40) synthase TruA compare
BBR_RS12855 +0.5 2.8 glycine cleavage system protein H compare
BBR_RS20960 +0.5 2.0 hypothetical protein compare
BBR_RS20730 +0.5 2.5 Crp/Fnr family transcriptional regulator compare
BBR_RS14715 +0.5 1.0 XRE family transcriptional regulator compare
BBR_RS20480 +0.5 0.5 membrane protein compare
BBR_RS11595 +0.5 2.2 50S ribosomal protein L9 compare
BBR_RS16950 +0.5 0.6 hypothetical protein compare
BBR_RS12245 +0.5 1.3 polyribonucleotide nucleotidyltransferase compare
BBR_RS12370 +0.4 0.7 cell division protein compare
BBR_RS19205 +0.4 4.0 Evolved beta-galactosidase subunit alpha compare
BBR_RS12575 +0.4 2.0 hypothetical protein compare
BBR_RS19200 +0.4 3.4 hypothetical protein compare
BBR_RS19270 +0.4 0.6 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase compare
BBR_RS16285 +0.4 2.2 magnesium transporter CorA family protein compare
BBR_RS12805 +0.4 1.2 hypothetical protein compare
BBR_RS19330 +0.4 1.8 hypothetical protein compare
BBR_RS12440 +0.4 3.2 Permease of ABC transporter system compare
BBR_RS11355 +0.4 2.1 hypothetical protein compare
BBR_RS16980 +0.3 2.5 LysM peptidoglycan-binding domain-containing protein compare
BBR_RS20825 +0.3 1.1 hypothetical protein compare
BBR_RS18005 +0.3 2.2 hypothetical protein compare
BBR_RS18640 +0.3 2.1 PspC domain-containing protein compare
BBR_RS13185 +0.3 2.1 PIN domain-containing protein compare
BBR_RS16275 +0.3 0.8 leucine--tRNA ligase compare
BBR_RS17865 +0.3 2.4 MarR family transcriptional regulator compare
BBR_RS17625 +0.3 2.2 HAD family phosphatase compare
BBR_RS15170 +0.3 2.6 HlyC/CorC family transporter compare
BBR_RS14040 +0.3 1.5 GNAT family N-acetyltransferase compare
BBR_RS16445 +0.3 1.8 hypothetical protein compare
BBR_RS16080 +0.3 0.9 DUF1287 domain-containing protein compare
BBR_RS15450 +0.3 1.3 dihydroorotate dehydrogenase compare
BBR_RS13450 +0.3 1.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BBR_RS12940 +0.3 2.2 hypothetical protein compare
BBR_RS13300 +0.3 0.5 5-(carboxyamino)imidazole ribonucleotide synthase compare
BBR_RS12505 +0.3 1.5 ABC transporter permease compare
BBR_RS14945 +0.3 1.9 peptidase E compare
BBR_RS15880 +0.3 1.0 hypothetical protein compare
BBR_RS14740 +0.3 1.8 YccF domain-containing protein compare
BBR_RS16490 +0.3 1.4 polyprenyl synthase compare
BBR_RS18645 +0.3 2.4 DNA-binding response regulator compare
BBR_RS14850 +0.3 1.1 VOC family protein compare
BBR_RS20655 +0.3 1.8 hypothetical protein compare
BBR_RS16835 +0.3 1.3 cell wall biosynthesis-associated protein compare
BBR_RS17940 +0.3 1.8 large conductance mechanosensitive channel protein MscL compare
BBR_RS20135 +0.3 2.7 alpha-glucosidase compare
BBR_RS20810 +0.3 0.5 pirin compare
BBR_RS20840 +0.3 1.0 hypothetical protein compare
BBR_RS12460 +0.3 2.0 LacI family DNA-binding transcriptional regulator compare
BBR_RS16135 +0.3 0.8 peptide deformylase compare
BBR_RS16015 +0.3 1.2 DUF2089 domain-containing protein compare
BBR_RS20980 +0.3 0.5 hypothetical protein compare
BBR_RS12435 +0.3 2.3 ABC transporter ATP-binding protein compare
BBR_RS16540 +0.3 1.6 XRE family transcriptional regulator compare
BBR_RS11470 +0.3 0.5 6-phosphogluconolactonase compare
BBR_RS16095 +0.3 1.6 imidazole glycerol phosphate synthase subunit HisF compare
BBR_RS16010 +0.3 1.3 hypothetical protein compare
BBR_RS10915 +0.3 1.4 MerR family DNA-binding transcriptional regulator compare
BBR_RS14890 +0.2 1.9 inorganic phosphate transporter compare
BBR_RS20955 +0.2 0.6 hypothetical protein compare
BBR_RS15140 +0.2 1.7 RNA methyltransferase compare
BBR_RS13840 +0.2 0.9 DUF3043 domain-containing protein compare
BBR_RS20870 +0.2 0.8 hypothetical protein compare
BBR_RS20865 +0.2 1.0 glycogen phosphorylase compare
BBR_RS18345 +0.2 1.4 hypothetical protein compare
BBR_RS20715 +0.2 1.3 hypothetical protein compare
BBR_RS13215 +0.2 0.8 hypothetical protein compare
BBR_RS14055 +0.2 1.6 ABC-2 transporter permease compare
BBR_RS15355 +0.2 1.2 DUF3800 domain-containing protein compare
BBR_RS13255 +0.2 1.3 hypothetical protein compare
BBR_RS20775 +0.2 0.7 DUF4230 domain-containing protein compare
BBR_RS14845 +0.2 0.8 permease compare
BBR_RS15855 +0.2 1.0 N-acetyltransferase compare
BBR_RS15350 +0.2 0.8 plasmid pRiA4b ORF-3 family protein compare
BBR_RS13420 +0.2 1.1 DUF4230 domain-containing protein compare
BBR_RS20565 +0.2 1.9 pilus assembly protein compare
BBR_RS11395 +0.2 1.1 DNA-binding protein compare
BBR_RS15965 +0.2 1.3 transporter, drug/metabolite exporter family compare
BBR_RS10805 +0.2 2.0 LacI family transcriptional regulator compare
BBR_RS15395 +0.2 1.6 tRNA (adenine-N1)-methyltransferase compare
BBR_RS15955 +0.2 1.1 hypothetical protein compare
BBR_RS15985 +0.2 1.6 IS30 family transposase compare
BBR_RS17995 +0.2 1.7 citrate synthase compare
BBR_RS18445 +0.2 1.7 hypothetical protein compare
BBR_RS16075 +0.2 1.1 hypothetical protein compare
BBR_RS15570 +0.2 1.5 branched-chain amino acid transport system II carrier protein compare
BBR_RS13270 +0.2 1.6 ABC transporter ATP-binding protein compare
BBR_RS21035 +0.2 1.1 AMMECR1 domain-containing protein compare
BBR_RS15445 +0.2 1.0 dihydroorotate dehydrogenase electron transfer subunit compare
BBR_RS15820 +0.2 1.4 SOS response-associated peptidase compare
BBR_RS10755 +0.2 1.2 adenylosuccinate synthase compare
BBR_RS20935 +0.2 0.9 hypothetical protein compare
BBR_RS17530 +0.2 1.5 Permease of ABC transporter system compare
BBR_RS10430 +0.2 1.9 LacI family transcriptional regulator compare
BBR_RS16440 +0.2 0.8 SGNH/GDSL hydrolase family protein compare
BBR_RS15860 +0.2 0.3 DUF2316 domain-containing protein compare
BBR_RS16735 +0.2 1.5 NUDIX hydrolase compare
BBR_RS21055 +0.2 1.0 hypothetical protein compare
BBR_RS20750 +0.2 0.7 GntR family transcriptional regulator compare
BBR_RS20805 +0.2 1.0 hypothetical protein compare
BBR_RS19965 +0.2 1.1 transposase compare
BBR_RS15410 +0.2 1.3 methylenetetrahydrofolate reductase [NAD(P)H] compare
BBR_RS17590 +0.2 1.3 PTS sugar transporter subunit IIA compare
BBR_RS20570 +0.2 1.2 hypothetical protein compare
BBR_RS11010 +0.2 1.6 DNA-binding protein compare
BBR_RS15930 +0.2 0.7 RNA polymerase sigma factor compare
BBR_RS20760 +0.2 0.6 hypothetical protein compare
BBR_RS10825 +0.2 1.8 beta-glucosidase compare
BBR_RS13415 +0.2 1.3 hypothetical protein compare
BBR_RS17875 +0.2 1.4 glucan 1,3-beta-glucosidase compare
BBR_RS16270 +0.2 1.1 competence protein ComEA compare
BBR_RS16630 +0.2 1.2 exodeoxyribonuclease III compare
BBR_RS12620 +0.2 1.6 glycosyltransferase family 1 protein compare
BBR_RS17945 +0.2 1.2 nucleoside deoxyribosyltransferase compare
BBR_RS18360 +0.2 1.6 hypothetical protein compare
BBR_RS16310 +0.2 1.3 hypothetical protein compare
BBR_RS19615 +0.2 1.5 DUF805 domain-containing protein compare
BBR_RS14930 +0.2 1.2 DNA-binding protein, also contains divergent AAA domain for ATP binding (DNA helicase) compare
BBR_RS16175 +0.2 0.6 DNA integration/recombination/inversion protein compare
BBR_RS13895 +0.2 1.1 acetylglutamate kinase compare
BBR_RS17935 +0.2 1.6 long-chain fatty acid--CoA ligase compare
BBR_RS15340 +0.2 0.7 hypothetical protein compare
BBR_RS13545 +0.2 1.1 DUF4143 domain-containing protein compare
BBR_RS13390 +0.2 0.9 hypothetical protein compare
BBR_RS20030 +0.2 1.4 IS5/IS1182 family transposase compare
BBR_RS14985 +0.2 0.6 ATP-dependent DNA helicase PcrA compare
BBR_RS16760 +0.2 1.2 glycerate kinase compare
BBR_RS15870 +0.2 0.6 hypothetical protein compare
BBR_RS19885 +0.2 1.6 ABC transporter permease compare
BBR_RS16150 +0.2 1.2 GuaB3 family IMP dehydrogenase-related protein compare
BBR_RS10890 +0.2 1.5 LacI family transcriptional regulator compare
BBR_RS17350 +0.2 0.9 Lysine exporter protein compare
BBR_RS10740 +0.2 0.5 tRNA-Gly compare
BBR_RS17215 +0.2 1.2 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
BBR_RS20250 +0.2 1.1 transcriptional regulator compare
BBR_RS14670 +0.2 1.3 excinuclease ABC subunit UvrA compare
BBR_RS13750 +0.2 0.5 DivIVA domain-containing protein compare
BBR_RS14925 +0.2 1.1 ABC transporter permease compare
BBR_RS20845 +0.2 1.1 cupin compare
BBR_RS17330 +0.2 1.4 replication-associated recombination protein A compare
BBR_RS17810 +0.2 1.2 HAD family hydrolase compare
BBR_RS14665 +0.2 1.1 MATE family efflux transporter compare
BBR_RS12760 +0.2 1.2 hypothetical protein compare
BBR_RS17715 +0.2 1.0 type I-C CRISPR-associated protein Cas5 compare
BBR_RS14655 +0.2 1.0 AraC family transcriptional regulator compare
BBR_RS13590 +0.2 0.9 hypothetical protein compare
BBR_RS16710 +0.2 0.7 hypothetical protein compare
BBR_RS17240 +0.2 1.2 hypothetical protein compare
BBR_RS13165 +0.2 1.3 amino acid permease compare
BBR_RS15075 +0.2 0.9 peptidase A24 compare
BBR_RS13355 +0.2 1.2 ABC transporter substrate-binding protein compare
BBR_RS16035 +0.2 0.4 hypothetical protein compare
BBR_RS15945 +0.2 0.7 hypothetical protein compare
BBR_RS14225 +0.2 0.8 ComF family protein compare
BBR_RS20575 +0.2 1.2 hypothetical protein compare
BBR_RS19600 +0.1 1.2 hypothetical protein compare
BBR_RS19730 +0.1 1.3 hypothetical protein compare
BBR_RS18530 +0.1 1.1 low molecular weight phosphotyrosine protein phosphatase compare
BBR_RS10840 +0.1 1.4 LacI family transcriptional regulator compare
BBR_RS15135 +0.1 1.1 glucose-1-phosphate adenylyltransferase compare
BBR_RS20780 +0.1 0.7 hypothetical protein compare
BBR_RS21085 +0.1 0.8 hypothetical protein compare
BBR_RS19880 +0.1 1.4 ABC transporter ATP-binding protein compare
BBR_RS15460 +0.1 0.4 hypothetical protein compare
BBR_RS13155 +0.1 0.8 S-ribosylhomocysteine lyase compare
BBR_RS18135 +0.1 0.8 hypothetical protein compare
BBR_RS15790 +0.1 1.0 ATP phosphoribosyltransferase compare
BBR_RS16660 +0.1 1.1 ABC transporter ATP-binding protein compare
BBR_RS14800 +0.1 0.8 glucosamine-6-phosphate deaminase compare
BBR_RS16345 +0.1 1.2 hypothetical protein compare
BBR_RS12695 +0.1 1.2 IS21 family transposase compare
BBR_RS19915 +0.1 1.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
BBR_RS19825 +0.1 1.2 HD domain-containing protein compare
BBR_RS20665 +0.1 0.7 hypothetical protein compare
BBR_RS12160 +0.1 1.1 carbohydrate ABC transporter permease compare
BBR_RS14345 +0.1 0.7 hypothetical protein compare
BBR_RS20835 +0.1 0.7 hypothetical protein compare
BBR_RS20035 +0.1 1.2 IS5/IS1182 family transposase compare
BBR_RS20660 +0.1 0.9 hypothetical protein compare
BBR_RS12890 +0.1 1.1 NADH:flavin oxidoreductase/NADH oxidase compare
BBR_RS18010 +0.1 1.2 zinc metalloprotease compare
BBR_RS10595 +0.1 1.2 glutamine amidotransferase compare
BBR_RS17115 +0.1 0.9 aldo/keto reductase compare
BBR_RS19010 +0.1 1.2 glycoside hydrolase family 1 protein compare
BBR_RS14200 +0.1 0.4 WhiB family transcriptional regulator compare
BBR_RS19995 +0.1 1.1 ABC transporter permease compare
BBR_RS15895 +0.1 0.6 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Bifidobacterium breve UCC2003 in temperature experiments