Experiment set6IT030 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Aluminum chloride hydrate 0.00005 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3303 -3.6 -4.3 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_5316 -3.5 -2.4 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_5068 -3.4 -12.9 putative Cytochrome bd2, subunit I compare
Pf6N2E2_3661 -3.1 -2.2 hypothetical protein compare
Pf6N2E2_3663 -3.1 -8.0 Glycosyl transferase compare
Pf6N2E2_5242 -2.9 -2.7 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_3659 -2.8 -6.4 Protein fixF compare
Pf6N2E2_5103 -2.8 -1.8 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_5069 -2.7 -5.4 putative Cytochrome bd2, subunit II compare
Pf6N2E2_4611 -2.6 -4.2 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_2181 -2.5 -2.4 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_3782 -2.5 -3.7 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3252 -2.4 -7.0 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_2753 -2.3 -2.7 HtrA protease/chaperone protein compare
Pf6N2E2_1056 -2.3 -1.5 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_3841 -2.3 -5.2 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_2320 -2.2 -3.5 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_3658 -2.1 -6.6 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_3839 -2.1 -4.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_4153 -2.0 -1.4 Sensory box histidine kinase compare
Pf6N2E2_3655 -2.0 -8.2 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_5527 -2.0 -2.4 Cold shock protein CspC compare
Pf6N2E2_2274 -2.0 -5.3 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_5531 -1.9 -3.6 hypothetical protein compare
Pf6N2E2_737 -1.9 -2.5 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) compare
Pf6N2E2_3664 -1.8 -7.1 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_4743 -1.8 -1.3 hypothetical protein compare
Pf6N2E2_3261 -1.8 -4.3 hypothetical protein compare
Pf6N2E2_1694 -1.8 -1.7 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_2999 -1.8 -3.3 probable tail fiber assembly protein compare
Pf6N2E2_4751 -1.7 -3.6 response regulator compare
Pf6N2E2_2507 -1.7 -5.0 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_4418 -1.7 -1.2 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_5727 -1.7 -5.1 FIG00955360: hypothetical protein compare
Pf6N2E2_2506 -1.7 -9.7 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_1617 -1.7 -1.6 COG2199: FOG: GGDEF domain compare
Pf6N2E2_3829 -1.6 -3.1 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf6N2E2_3656 -1.6 -5.4 Probable transcription regulator Mig-14 compare
Pf6N2E2_5499 -1.6 -1.3 hypothetical protein compare
Pf6N2E2_4369 -1.6 -2.5 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_1626 -1.6 -5.9 Putative ATP-binding component of a transport system compare
Pf6N2E2_3198 -1.6 -2.0 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_2313 -1.6 -2.6 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_5014 -1.5 -1.3 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_3842 -1.5 -3.7 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_5816 -1.5 -1.9 Smr domain protein compare
Pf6N2E2_754 -1.4 -1.8 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf6N2E2_3611 -1.4 -1.6 HflC protein compare
Pf6N2E2_2218 -1.4 -3.2 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_5555 -1.4 -1.6 Cold shock protein CspA compare
Pf6N2E2_2010 -1.4 -1.7 hypothetical protein compare
Pf6N2E2_5993 -1.4 -2.4 FIG00957412: hypothetical protein compare
Pf6N2E2_6140 -1.3 -1.1 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_2126 -1.3 -4.3 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_3634 -1.3 -2.1 Transporter compare
Pf6N2E2_2081 -1.3 -2.3 putative exported protein compare
Pf6N2E2_3641 -1.3 -1.9 ADP-ribose pyrophosphatase (EC 3.6.1.13) compare
Pf6N2E2_3351 -1.3 -3.5 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_5150 -1.3 -3.1 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_2824 -1.3 -6.5 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_3160 -1.3 -5.1 Multicopper oxidase compare
Pf6N2E2_2152 -1.2 -1.8 hypothetical protein compare
Pf6N2E2_3783 -1.2 -4.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_5088 -1.2 -2.4 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4889 -1.2 -4.6 Putative transport protein compare
Pf6N2E2_98 -1.2 -2.1 putative transmembrane protein compare
Pf6N2E2_4556 -1.2 -3.2 FIG00953078: hypothetical protein compare
Pf6N2E2_1636 -1.2 -5.2 Ferrichrome-iron receptor compare
Pf6N2E2_5705 -1.2 -2.2 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_2318 -1.2 -5.1 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_288 -1.2 -1.8 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_4908 -1.2 -4.4 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_4803 -1.2 -1.5 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_2317 -1.2 -3.3 Putative analog of CcoH, COG3198 compare
Pf6N2E2_5640 -1.2 -1.4 FIG00955597: hypothetical protein compare
Pf6N2E2_309 -1.1 -1.8 FIG00957702: hypothetical protein compare
Pf6N2E2_395 -1.1 -3.0 Glutathione S-transferase (EC 2.5.1.18) compare
Pf6N2E2_2156 -1.1 -1.1 Putative polyketide synthase (Fragment) compare
Pf6N2E2_3475 -1.1 -1.3 hypothetical protein compare
Pf6N2E2_2189 -1.1 -3.5 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_5794 -1.1 -1.9 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_2586 -1.1 -1.6 Hpt domain protein compare
Pf6N2E2_4416 -1.1 -1.8 Tyrosine recombinase XerC compare
Pf6N2E2_2509 -1.1 -1.9 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_2508 -1.1 -2.7 hypothetical protein compare
Pf6N2E2_1081 -1.1 -1.5 probable membrane protein YPO3302 compare
Pf6N2E2_5748 -1.1 -2.1 Transcriptional activator protein LuxR compare
Pf6N2E2_2853 -1.1 -6.5 Iron-regulated protein A precursor compare
Pf6N2E2_2574 -1.1 -1.2 Flagellar synthesis regulator FleN compare
Pf6N2E2_3221 -1.1 -2.9 FIG00352444: hypothetical protein compare
Pf6N2E2_605 -1.1 -2.3 FIG002465: BNR repeat protein compare
Pf6N2E2_2984 -1.1 -1.6 LysR family transcriptional regulator PA3398 compare
Pf6N2E2_189 -1.0 -2.5 regulatory protein, putative compare
Pf6N2E2_5156 -1.0 -1.7 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_2755 -1.0 -1.2 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_4159 -1.0 -2.6 Cytochrome c4 compare
Pf6N2E2_5320 -1.0 -4.9 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf6N2E2_5319 -1.0 -4.6 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf6N2E2_2264 -1.0 -2.4 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_2311 -1.0 -4.4 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_3941 -1.0 -2.1 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_4579 -1.0 -1.6 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_3908 -1.0 -3.7 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_756 -1.0 -3.5 hypothetical protein compare
Pf6N2E2_5508 -1.0 -1.3 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_2310 -1.0 -5.3 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_3940 -1.0 -4.5 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4107 -1.0 -4.7 Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone compare
Pf6N2E2_3786 -1.0 -2.0 Twin-arginine translocation protein TatC compare
Pf6N2E2_1545 -1.0 -2.8 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_3830 -1.0 -2.4 Glutaredoxin 3 (Grx3) compare
Pf6N2E2_2706 -0.9 -2.1 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_4601 -0.9 -1.7 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_4479 -0.9 -1.5 FIG001590: Putative conserved exported protein precursor compare
Pf6N2E2_5406 -0.9 -1.7 FIG00958224: hypothetical protein compare
Pf6N2E2_156 -0.9 -1.6 Carbon storage regulator compare
Pf6N2E2_6035 -0.9 -1.9 alpha/beta hydrolase fold compare
Pf6N2E2_5425 -0.9 -0.9 hypothetical protein compare
Pf6N2E2_4279 -0.9 -5.1 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_4548 -0.9 -1.8 hypothetical protein compare
Pf6N2E2_4077 -0.9 -1.6 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_4057 -0.9 -0.9 lipoprotein, putative compare
Pf6N2E2_2552 -0.9 -3.1 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_5339 -0.9 -2.9 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_5944 -0.9 -3.0 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) compare
Pf6N2E2_3258 -0.9 -2.6 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_5746 -0.9 -1.5 Cobalamin synthase compare
Pf6N2E2_2059 -0.9 -1.9 ChlI component of cobalt chelatase involved in B12 biosynthesis compare
Pf6N2E2_2912 -0.9 -1.3 FIG00954094: hypothetical protein compare
Pf6N2E2_788 -0.9 -3.1 hypothetical protein compare
Pf6N2E2_1723 -0.9 -2.2 Transcriptional regulator, TetR family compare
Pf6N2E2_3251 -0.9 -4.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_1412 -0.9 -2.2 hypothetical protein compare
Pf6N2E2_6100 -0.8 -1.9 tRNA-Val-TAC compare
Pf6N2E2_2823 -0.8 -2.8 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_3151 -0.8 -2.5 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_2261 -0.8 -3.3 VacJ-like lipoprotein precursor compare
Pf6N2E2_3264 -0.8 -2.0 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_2825 -0.8 -2.3 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_1269 -0.8 -3.2 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf6N2E2_5318 -0.8 -6.5 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Pf6N2E2_2519 -0.8 -1.1 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) compare
Pf6N2E2_1947 -0.8 -2.4 Coenzyme PQQ synthesis protein E compare
Pf6N2E2_5321 -0.8 -3.5 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
Pf6N2E2_4187 -0.8 -2.4 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_3840 -0.8 -2.1 FIG00956267: hypothetical protein compare
Pf6N2E2_4464 -0.8 -1.5 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like compare
Pf6N2E2_1086 -0.8 -2.9 Acyl-homoserine lactone acylase PvdQ (EC 3.5.1.-), quorum-quenching compare
Pf6N2E2_2340 -0.8 -2.7 Transcriptional regulator, GntR family compare
Pf6N2E2_2480 -0.8 -1.0 FIG00957636: hypothetical protein compare
Pf6N2E2_1371 -0.8 -2.1 hypothetical protein compare
Pf6N2E2_3610 -0.8 -2.1 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_5262 -0.8 -1.4 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf6N2E2_1223 -0.8 -1.7 Amino acid transporters compare
Pf6N2E2_2080 -0.8 -1.0 hypothetical protein compare
Pf6N2E2_3835 -0.8 -2.0 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_5679 -0.8 -2.6 hypothetical protein compare
Pf6N2E2_502 -0.8 -2.2 hypothetical protein compare
Pf6N2E2_1272 -0.8 -5.0 Acriflavin resistance plasma membrane protein compare
Pf6N2E2_946 -0.8 -1.6 Transcriptional regulator, LysR family compare
Pf6N2E2_4609 -0.7 -2.4 UPF0301 protein YqgE compare
Pf6N2E2_5618 -0.7 -4.1 Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites compare
Pf6N2E2_4496 -0.7 -2.6 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_352 -0.7 -3.3 Opine oxidase subunit B compare
Pf6N2E2_5536 -0.7 -1.0 Holliday junction DNA helicase RuvA compare
Pf6N2E2_238 -0.7 -1.1 hypothetical protein compare
Pf6N2E2_4160 -0.7 -0.8 Cytochrome c5 compare
Pf6N2E2_70 -0.7 -1.6 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_5671 -0.7 -1.5 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_2258 -0.7 -3.8 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_3665 -0.7 -0.6 serine/threonine protein kinase compare
Pf6N2E2_4204 -0.7 -0.8 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_1287 -0.7 -1.9 Mobile element protein compare
Pf6N2E2_4342 -0.7 -2.1 Protein phosphatase ImpM compare
Pf6N2E2_1087 -0.7 -3.8 Iron siderophore sensor protein compare
Pf6N2E2_942 -0.7 -1.0 Mll6465 protein compare
Pf6N2E2_3201 -0.7 -2.3 Transcriptional regulator, MerR family compare
Pf6N2E2_3847 -0.7 -1.9 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_3947 -0.7 -1.2 Cd(II)/Pb(II)-responsive transcriptional regulator compare
Pf6N2E2_3607 -0.7 -3.8 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_2200 -0.7 -0.8 RNA polymerase sigma-54 factor RpoN compare
Pf6N2E2_987 -0.7 -1.4 hypothetical protein compare
Pf6N2E2_5979 -0.7 -2.6 D-galactonate regulator, IclR family compare
Pf6N2E2_4996 -0.7 -1.9 LSU m3Psi1915 methyltransferase RlmH compare
Pf6N2E2_464 -0.7 -1.6 Sensory histidine kinase QseC compare
Pf6N2E2_4545 -0.7 -1.1 hypothetical protein compare
Pf6N2E2_1635 -0.7 -2.3 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components compare
Pf6N2E2_3534 -0.7 -1.0 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_3785 -0.7 -2.7 Twin-arginine translocation protein TatB compare
Pf6N2E2_1673 -0.7 -1.7 Transcriptional regulator, TetR family compare
Pf6N2E2_2469 -0.7 -2.5 hypothetical protein compare
Pf6N2E2_2510 -0.7 -2.1 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_4624 -0.7 -0.6 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf6N2E2_3454 -0.7 -1.7 hypothetical protein compare
Pf6N2E2_2309 -0.7 -1.1 hypothetical protein compare
Pf6N2E2_2180 -0.7 -1.6 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_896 -0.7 -1.1 Regulatory protein, LysR:LysR, substrate-binding compare
Pf6N2E2_3253 -0.7 -2.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_1697 -0.7 -2.6 Alkanesulfonate monooxygenase (EC 1.14.14.5) compare
Pf6N2E2_945 -0.7 -1.2 Transcriptional regulator, TetR family compare


Specific Phenotypes

For 2 genes in this experiment

For stress Aluminum chloride hydrate in Pseudomonas fluorescens FW300-N2E2

For stress Aluminum chloride hydrate across organisms