Experiment set6IT030 for Methanococcus maripaludis S2

Compare to:

formate McAA lipolic acid dropout

200 most important genes:

  gene name fitness t score description  
MMP_RS01175 -4.8 -10.7 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS06355 -4.3 -5.9 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS00300 -4.1 -1.7 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS01020 -3.7 -2.1 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS03015 -3.7 -15.1 GTP 3' 8-cyclase MoaA compare
MMP_RS06685 -3.7 -16.8 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS05515 -3.6 -9.3 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS06680 -3.6 -20.3 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS06700 -3.6 -19.6 hypothetical protein compare
MMP_RS06345 -3.5 -16.2 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS06350 -3.4 -10.4 HesA/MoeB/ThiF family protein compare
MMP_RS07635 -3.2 -13.3 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS06720 -3.1 -12.5 response regulator transcription factor compare
MMP_RS06715 -3.1 -19.9 cache domain-containing protein compare
MMP_RS08715 -3.0 -3.9 formylmethanofuran dehydrogenase subunit B compare
MMP_RS03315 -3.0 -2.1 ferrous iron transport protein A compare
MMP_RS02010 -3.0 -13.1 PHP domain-containing protein compare
MMP_RS07735 -3.0 -2.0 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS08460 -3.0 -4.3 proteasome-activating nucleotidase compare
MMP_RS01985 -3.0 -14.5 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS04900 -2.8 -23.0 hypothetical protein compare
MMP_RS01005 -2.8 -2.7 riboflavin synthase compare
MMP_RS07005 -2.8 -1.4 4Fe-4S binding protein compare
MMP_RS00040 -2.7 -5.7 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS08210 -2.7 -5.6 phosphatidylglycerophosphatase A compare
MMP_RS06705 -2.6 -10.1 formate/nitrite transporter family protein compare
MMP_RS06295 -2.6 -12.9 methanogenesis marker 14 protein compare
MMP_RS03960 -2.6 -2.2 hypothetical protein compare
MMP_RS08820 -2.6 -7.8 hypothetical protein compare
MMP_RS08745 -2.5 -10.5 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS04775 -2.5 -4.6 adenosylhomocysteinase compare
MMP_RS06285 -2.4 -5.1 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS01265 -2.4 -3.4 hypothetical protein compare
MMP_RS06975 -2.4 -4.5 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS02195 -2.3 -4.7 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS01500 -2.3 -4.6 CBS domain-containing protein compare
MMP_RS07525 -2.3 -12.0 4Fe-4S binding protein compare
MMP_RS04585 -2.3 -12.0 AIR synthase related protein compare
MMP_RS03600 -2.3 -4.4 triose-phosphate isomerase compare
MMP_RS07730 -2.2 -3.2 pyruvate synthase subunit beta compare
MMP_RS08720 -2.2 -2.6 4Fe-4S binding protein compare
MMP_RS07445 -2.2 -6.4 helix-turn-helix domain-containing protein compare
MMP_RS03580 -2.2 -7.0 signal recognition particle-docking protein FtsY compare
MMP_RS01220 -2.2 -11.1 hypothetical protein compare
MMP_RS08300 -2.1 -2.3 metal-sulfur cluster assembly factor compare
MMP_RS01385 -2.1 -1.2 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS06400 -2.1 -3.5 4Fe-4S binding protein compare
MMP_RS01980 -2.0 -13.9 trimeric intracellular cation channel family protein compare
MMP_RS03025 -2.0 -6.7 molybdenum cofactor guanylyltransferase compare
MMP_RS03435 -2.0 -2.1 ketol-acid reductoisomerase compare
MMP_RS04605 -2.0 -7.2 cobalt ECF transporter T component CbiQ compare
MMP_RS02355 -2.0 -4.1 30S ribosomal protein S27ae compare
MMP_RS02280 -2.0 -1.7 DUF211 domain-containing protein compare
MMP_RS00115 -1.9 -12.8 radical SAM protein compare
MMP_RS08635 -1.9 -3.1 UbiA family prenyltransferase compare
MMP_RS08645 -1.9 -9.6 UPF0179 family protein compare
MMP_RS06105 -1.9 -7.5 hydrogenase maturation peptidase HycI compare
MMP_RS04710 -1.9 -2.2 hypothetical protein compare
MMP_RS07765 -1.9 -9.1 sodium:alanine symporter family protein compare
MMP_RS00110 -1.9 -5.1 hypothetical protein compare
MMP_RS01225 -1.8 -7.8 DUF5379 domain-containing protein compare
MMP_RS04615 -1.8 -5.9 PDGLE domain-containing protein compare
MMP_RS08790 -1.8 -2.6 translation initiation factor IF-2 subunit alpha compare
MMP_RS01610 -1.8 -4.3 hypothetical protein compare
MMP_RS01380 -1.8 -6.4 PHP domain-containing protein compare
MMP_RS04620 -1.8 -12.0 cobalt transporter CbiM compare
MMP_RS06730 -1.7 -2.1 phosphopantothenate/pantothenate synthetase compare
MMP_RS01795 -1.7 -3.0 methanogenesis marker 6 protein compare
MMP_RS02800 -1.7 -6.3 nucleotidyltransferase domain-containing protein compare
MMP_RS07600 -1.7 -2.9 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS06270 -1.7 -6.4 TIGR00300 family protein compare
MMP_RS04780 -1.6 -4.2 ribonuclease P compare
MMP_RS07605 -1.6 -4.7 diadenylate cyclase compare
MMP_RS02235 -1.6 -7.8 CBS domain-containing protein compare
MMP_RS02340 -1.6 -3.5 DNA-directed RNA polymerase subunit E'' compare
MMP_RS07845 -1.6 -4.5 LL-diaminopimelate aminotransferase compare
MMP_RS00295 -1.6 -4.2 gamma carbonic anhydrase family protein compare
MMP_RS06625 -1.6 -3.4 DNA primase compare
MMP_RS02240 -1.6 -4.4 methanogenesis marker 7 protein compare
MMP_RS01755 -1.5 -1.8 DUF2097 domain-containing protein compare
MMP_RS05430 -1.5 -4.8 TIGR00288 family NYN domain-containing protein compare
MMP_RS03475 -1.5 -1.1 hypothetical protein compare
MMP_RS01725 -1.5 -5.2 class I SAM-dependent methyltransferase family protein compare
MMP_RS01545 -1.5 -1.7 CBS domain-containing protein compare
MMP_RS00620 -1.5 -6.5 4Fe-4S binding protein compare
MMP_RS01325 -1.5 -2.4 dihydroneopterin aldolase family protein compare
MMP_RS03640 -1.5 -5.0 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS05765 -1.4 -6.7 M42 family metallopeptidase compare
MMP_RS02900 -1.4 -0.9 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS07365 -1.4 -9.9 2-phosphoglycerate kinase compare
MMP_RS06175 -1.4 -8.1 winged helix-turn-helix transcriptional regulator compare
MMP_RS01365 -1.4 -4.4 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS06885 -1.4 -3.3 50S ribosome-binding GTPase compare
MMP_RS01800 -1.4 -4.7 TIGR00303 family protein compare
MMP_RS00305 -1.4 -2.0 phosphoribosyl-ATP diphosphatase compare
MMP_RS02165 -1.4 -5.6 tRNA-dihydrouridine synthase compare
MMP_RS00895 -1.4 -6.0 hypothetical protein compare
MMP_RS00695 -1.4 -1.0 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS06200 -1.4 -8.4 M24 family metallopeptidase compare
MMP_RS02190 -1.3 -3.4 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS09020 -1.3 -2.3 hypothetical protein compare
MMP_RS08165 -1.3 -3.8 phosphoglycerate dehydrogenase compare
MMP_RS01250 -1.3 -3.2 tRNA (guanine(26)-N(2))-dimethyltransferase compare
MMP_RS04685 -1.3 -3.5 DUF126 domain-containing protein compare
MMP_RS05245 -1.3 -8.6 archaeosine biosynthesis radical SAM protein RaSEA compare
MMP_RS00685 -1.2 -4.3 2-phospho-L-lactate guanylyltransferase compare
MMP_RS03445 -1.2 -1.4 methanogenesis marker 17 protein compare
MMP_RS07545 -1.2 -1.7 HTH domain-containing protein compare
MMP_RS07755 -1.2 -2.0 DUF555 domain-containing protein compare
MMP_RS06630 -1.2 -1.4 UPF0058 family protein compare
MMP_RS04870 -1.2 -5.5 TIGR02253 family HAD-type hydrolase compare
MMP_RS06215 -1.2 -2.6 30S ribosomal protein S6e compare
MMP_RS05510 -1.2 -4.2 Rrf2 family transcriptional regulator compare
MMP_RS08095 -1.2 -5.9 dethiobiotin synthase compare
MMP_RS06020 -1.2 -4.5 archaeoflavoprotein AfpA compare
MMP_RS03400 -1.2 -2.6 archease compare
MMP_RS03035 -1.2 -2.6 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS07710 -1.1 -5.8 cell division protein FtsZ compare
MMP_RS05555 -1.1 -1.9 DUF4040 domain-containing protein compare
MMP_RS05540 -1.1 -3.4 hypothetical protein compare
MMP_RS04500 -1.1 -8.4 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS06475 -1.1 -3.7 FAD-dependent oxidoreductase compare
MMP_RS07685 -1.1 -5.0 TIGR01212 family radical SAM protein compare
MMP_RS09055 -1.0 -1.4 CAP domain-containing protein compare
MMP_RS05845 -1.0 -2.2 tRNA-intron lyase compare
MMP_RS06930 -1.0 -7.8 MBL fold metallo-hydrolase compare
MMP_RS05500 -1.0 -5.9 2-isopropylmalate synthase compare
MMP_RS06230 -1.0 -2.2 helix-turn-helix domain-containing protein compare
MMP_RS02345 -1.0 -2.0 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS07575 -1.0 -2.7 RNA ligase partner protein compare
MMP_RS03590 -1.0 -4.8 METTL5 family protein compare
MMP_RS08100 -1.0 -5.9 8-amino-7-oxononanoate synthase compare
MMP_RS07630 -1.0 -2.1 ATP-binding cassette domain-containing protein compare
MMP_RS05425 -1.0 -3.4 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS07580 -1.0 -2.1 DUF356 domain-containing protein compare
MMP_RS07200 -1.0 -4.5 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS02135 -1.0 -3.5 DUF5612 domain-containing protein compare
MMP_RS07645 -1.0 -3.8 aldehyde dehydrogenase family protein compare
MMP_RS06925 -0.9 -2.8 ribonuclease VapC4 compare
MMP_RS08940 -0.9 -1.6 MetS family NSS transporter small subunit compare
MMP_RS00515 -0.9 -1.0 DUF655 domain-containing protein compare
MMP_RS06340 -0.9 -5.9 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS00060 -0.9 -2.0 3-dehydroquinate synthase II compare
MMP_RS08200 -0.9 -6.8 archaeosine synthase subunit alpha compare
MMP_RS07775 -0.9 -2.8 alanine dehydrogenase compare
MMP_RS01700 -0.9 -0.9 dihydroxy-acid dehydratase compare
MMP_RS06915 -0.9 -5.2 metallophosphoesterase compare
MMP_RS05440 -0.9 -5.0 winged helix-turn-helix transcriptional regulator compare
MMP_RS07425 -0.9 -4.8 GTP-binding protein compare
MMP_RS07380 -0.9 -2.2 transcription elongation factor Spt5 compare
MMP_RS00555 -0.9 -3.7 MFS transporter compare
MMP_RS00915 -0.9 -4.1 DUF116 domain-containing protein compare
MMP_RS04890 -0.9 -1.1 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS01745 -0.9 -4.0 AMP phosphorylase compare
MMP_RS01830 -0.8 -2.0 tRNA-Val compare
MMP_RS08435 -0.8 -1.3 Era-like GTP-binding protein compare
MMP_RS03250 -0.8 -3.1 MJ1244 family protein compare
MMP_RS08615 -0.8 -2.0 flagellar protein G compare
MMP_RS00290 -0.8 -4.2 hypothetical protein compare
MMP_RS00850 -0.8 -2.8 TIGR01177 family methyltransferase compare
MMP_RS07390 -0.8 -2.5 cell division protein FtsZ compare
MMP_RS06725 -0.8 -5.5 hypothetical protein compare
MMP_RS00130 -0.8 -1.3 nickel-responsive transcriptional regulator NikR compare
MMP_RS00320 -0.8 -1.9 class I SAM-dependent methyltransferase compare
MMP_RS07750 -0.8 -3.0 DUF357 domain-containing protein compare
MMP_RS07790 -0.8 -4.1 segregation/condensation protein A compare
MMP_RS08650 -0.8 -1.8 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS01075 -0.7 -2.1 hypothetical protein compare
MMP_RS05345 -0.7 -3.3 hypothetical protein compare
MMP_RS03095 -0.7 -3.4 diphthine synthase compare
MMP_RS06370 -0.7 -2.8 biotin synthase BioB compare
MMP_RS02170 -0.7 -2.5 CBS domain-containing protein compare
MMP_RS06920 -0.7 -5.8 AAA family ATPase compare
MMP_RS05545 -0.7 -3.6 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS05285 -0.7 -3.1 MMPL family transporter compare
MMP_RS05815 -0.7 -1.2 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS06120 -0.7 -1.2 UPF0147 family protein compare
MMP_RS07555 -0.7 -0.7 monovalent cation/H+ antiporter subunit E compare
MMP_RS00035 -0.7 -4.5 DUF2098 family protein compare
MMP_RS05550 -0.7 -0.6 cation:proton antiporter compare
MMP_RS03205 -0.7 -1.5 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS01575 -0.7 -3.6 aldolase compare
MMP_RS08105 -0.7 -4.4 6-carboxyhexanoate--CoA ligase compare
MMP_RS02145 -0.7 -3.9 winged helix-turn-helix transcriptional regulator compare
MMP_RS07180 -0.6 -3.5 DEAD/DEAH box helicase compare
MMP_RS04695 -0.6 -3.4 selenide water dikinase SelD compare
MMP_RS01840 -0.6 -4.0 TIGR00289 family protein compare
MMP_RS06980 -0.6 -3.1 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS02955 -0.6 -1.7 DJ-1/PfpI family protein compare
MMP_RS08690 -0.6 -3.1 RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 compare
MMP_RS05800 -0.6 -4.3 B12-binding domain-containing radical SAM protein compare
MMP_RS04800 -0.6 -3.2 chemotaxis protein CheW compare
MMP_RS03210 -0.6 -4.3 tRNA guanosine(15) transglycosylase TgtA compare
MMP_RS00810 -0.6 -3.7 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS00475 -0.6 -3.6 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS07535 -0.6 -3.2 4Fe-4S binding protein compare
MMP_RS02935 -0.6 -2.8 A24 family peptidase compare
MMP_RS00985 -0.6 -2.6 CDC48 family AAA ATPase compare
MMP_RS06670 -0.6 -2.7 glucose-6-phosphate isomerase compare
MMP_RS03520 -0.6 -1.0 YwbE family protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t1 experiments