Experiment set6IT030 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

Protocatechuic Acid carbon source

200 most important genes:

  gene name fitness t score description  
H281DRAFT_01596 -7.6 -5.2 3-oxoadipate CoA-transferase beta subunit compare
H281DRAFT_06075 -6.6 -10.1 3-isopropylmalate dehydratase, large subunit compare
H281DRAFT_06059 -6.5 -10.8 O-succinylhomoserine sulfhydrylase compare
H281DRAFT_02004 -6.1 -4.2 phosphoglycerate mutase compare
H281DRAFT_06060 -5.9 -8.5 amidophosphoribosyltransferase compare
H281DRAFT_06067 -5.5 -14.2 tryptophan synthase, beta chain compare
H281DRAFT_02214 -5.5 -18.3 homoserine O-acetyltransferase compare
H281DRAFT_03864 -5.4 -5.8 protocatechuate 3,4-dioxygenase, alpha subunit compare
H281DRAFT_00627 -5.3 -10.1 phosphoenolpyruvate synthase compare
H281DRAFT_00909 -5.1 -7.0 phosphoribosylformylglycinamidine synthase compare
H281DRAFT_04119 -5.1 -7.7 ornithine carbamoyltransferase compare
H281DRAFT_06072 -5.1 -7.9 3-isopropylmalate dehydrogenase compare
H281DRAFT_06065 -5.0 -8.7 tryptophan synthase, alpha chain compare
H281DRAFT_04610 -5.0 -17.4 Fe-S oxidoreductase compare
H281DRAFT_03926 -4.9 -9.5 phosphoserine aminotransferase apoenzyme compare
H281DRAFT_05620 -4.9 -21.1 glutamate synthase (NADH) large subunit compare
H281DRAFT_04679 -4.7 -4.9 pyrroline-5-carboxylate reductase compare
H281DRAFT_01597 -4.6 -5.2 3-oxoadipate CoA-transferase alpha subunit compare
H281DRAFT_04120 -4.5 -8.2 argininosuccinate synthase compare
H281DRAFT_05801 -4.5 -7.1 5,10-methylenetetrahydrofolate reductase (NAD(P)) compare
H281DRAFT_01595 -4.5 -4.2 3-carboxy-cis,cis-muconate cycloisomerase compare
H281DRAFT_04974 -4.3 -7.5 aromatic-amino-acid transaminase compare
H281DRAFT_04710 -4.3 -5.3 phosphoribosylformylglycinamidine cyclo-ligase compare
H281DRAFT_00115 -4.3 -4.1 Uncharacterized conserved protein, DUF934 family compare
H281DRAFT_05713 -4.2 -8.1 anthranilate phosphoribosyltransferase compare
H281DRAFT_00120 -4.0 -6.2 sirohydrochlorin cobaltochelatase compare
H281DRAFT_03925 -4.0 -9.1 chorismate mutase compare
H281DRAFT_00118 -3.9 -6.5 sulfate adenylyltransferase subunit 1 compare
H281DRAFT_00117 -3.8 -5.5 sulfate adenylyltransferase subunit 2 compare
H281DRAFT_00194 -3.8 -2.5 argininosuccinate lyase compare
H281DRAFT_02000 -3.8 -5.0 glycerol-3-phosphate dehydrogenase (NAD(P)+) compare
H281DRAFT_04553 -3.8 -3.8 ketol-acid reductoisomerase compare
H281DRAFT_06068 -3.7 -8.3 phosphoribosylanthranilate isomerase compare
H281DRAFT_03866 -3.6 -4.6 transcriptional regulator, LysR family compare
H281DRAFT_05715 -3.6 -17.6 anthranilate synthase, component I compare
H281DRAFT_00860 -3.6 -2.2 phosphoserine phosphatase compare
H281DRAFT_05712 -3.5 -4.1 indole-3-glycerol phosphate synthase compare
H281DRAFT_06315 -3.4 -1.8 glyceraldehyde-3-phosphate dehydrogenase (NAD+) compare
H281DRAFT_00176 -3.4 -2.8 outer membrane lipoprotein carrier protein compare
H281DRAFT_04707 -3.4 -7.1 HAD-superfamily subfamily IB hydrolase, TIGR01490 compare
H281DRAFT_06264 -3.4 -3.7 glutamate 5-kinase compare
H281DRAFT_06073 -3.4 -2.9 3-isopropylmalate dehydratase, small subunit compare
H281DRAFT_00114 -3.1 -4.1 sulfite reductase (NADPH) beta subunit compare
H281DRAFT_03865 -3.0 -4.2 protocatechuate 3,4-dioxygenase, beta subunit compare
H281DRAFT_02215 -3.0 -2.7 methionine biosynthesis protein MetW compare
H281DRAFT_04075 -3.0 -9.3 formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase compare
H281DRAFT_00116 -3.0 -2.7 phosphoadenylylsulfate reductase (thioredoxin) compare
H281DRAFT_01504 -2.9 -10.4 3-oxoadipyl-CoA thiolase compare
H281DRAFT_05621 -2.8 -3.2 glutamate synthase (NADH) small subunit compare
H281DRAFT_00395 -2.7 -11.3 hydroxymethylpyrimidine synthase compare
H281DRAFT_01594 -2.7 -2.9 3-oxoadipate enol-lactonase compare
H281DRAFT_04687 -2.7 -10.0 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase compare
H281DRAFT_04831 -2.5 -3.3 hypothetical protein compare
H281DRAFT_05714 -2.4 -2.6 anthranilate synthase, component II compare
H281DRAFT_00529 -2.4 -3.1 KUP system potassium uptake protein compare
H281DRAFT_01985 -2.4 -9.6 protoheme IX farnesyltransferase compare
H281DRAFT_04835 -2.3 -2.8 hypothetical protein compare
H281DRAFT_05717 -2.2 -8.0 ribulose-5-phosphate 3-epimerase compare
H281DRAFT_04515 -2.2 -2.7 RNAse G compare
H281DRAFT_06308 -2.2 -3.7 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) compare
H281DRAFT_04172 -2.1 -3.1 transcriptional regulator, TetR family compare
H281DRAFT_01798 -1.8 -2.0 Transmembrane transcriptional regulator (anti-sigma factor RsiW) compare
H281DRAFT_04082 -1.8 -4.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
H281DRAFT_02670 -1.6 -2.0 transcriptional regulator, GntR family compare
H281DRAFT_01889 -1.6 -2.8 7-cyano-7-deazaguanine reductase compare
H281DRAFT_04055 -1.6 -6.7 Nucleoside-diphosphate-sugar epimerase compare
H281DRAFT_04680 -1.6 -2.2 hypothetical protein compare
H281DRAFT_05116 -1.5 -7.4 cell division protein ZapE compare
H281DRAFT_06310 -1.5 -3.7 Barstar (barnase inhibitor) compare
H281DRAFT_00195 -1.5 -7.5 transcriptional regulator, XRE family compare
H281DRAFT_01927 -1.4 -10.4 RNA polymerase, sigma 54 subunit, RpoN/SigL compare
H281DRAFT_02636 -1.3 -1.3 hypothetical protein compare
H281DRAFT_00454 -1.3 -4.2 nitrogen metabolism transcriptional regulator, NtrC, Fis family compare
H281DRAFT_02137 -1.3 -3.6 type I restriction enzyme M protein compare
H281DRAFT_04191 -1.2 -4.5 Branched-chain amino acid transport protein compare
H281DRAFT_02718 -1.2 -2.7 Glycine/D-amino acid oxidase (deaminating) compare
H281DRAFT_02693 -1.2 -2.0 transcriptional regulator, DeoR family compare
H281DRAFT_00851 -1.2 -8.2 polyhydroxyalkanoate synthase compare
H281DRAFT_05087 -1.2 -2.0 exodeoxyribonuclease V alpha subunit compare
H281DRAFT_01836 -1.2 -2.8 hypothetical protein compare
H281DRAFT_00809 -1.1 -3.9 alanine-synthesizing transaminase compare
H281DRAFT_04192 -1.1 -5.0 Predicted branched-chain amino acid permease (azaleucine resistance) compare
H281DRAFT_00848 -1.1 -1.0 ribosomal large subunit pseudouridine synthase D (EC 5.4.99.-) compare
H281DRAFT_05705 -1.0 -2.1 hypothetical protein compare
H281DRAFT_00113 -1.0 -3.6 transcriptional regulator, LysR family compare
H281DRAFT_02196 -1.0 -3.3 phytanoyl-CoA hydroxylase compare
H281DRAFT_00600 -1.0 -6.1 succinyldiaminopimelate aminotransferase apoenzyme compare
H281DRAFT_00853 -1.0 -1.7 3-oxoacyl-[acyl-carrier-protein] reductase /acetoacetyl-CoA reductase compare
H281DRAFT_05085 -1.0 -2.0 DNA helicase/exodeoxyribonuclease V, gamma subunit compare
H281DRAFT_00757 -1.0 -1.4 hypothetical protein compare
H281DRAFT_03274 -1.0 -1.8 hypothetical protein compare
H281DRAFT_04026 -1.0 -4.1 3-octaprenyl-4hydroxybenzoate decarboxylase compare
H281DRAFT_06102 -1.0 -2.9 peptide/nickel transport system permease protein compare
H281DRAFT_04727 -0.9 -2.8 transcriptional repressor NrdR compare
H281DRAFT_02410 -0.9 -4.8 glycine cleavage system H protein compare
H281DRAFT_00119 -0.9 -2.8 uroporphyrinogen-III C-methyltransferase compare
H281DRAFT_00506 -0.9 -2.0 Zn-dependent protease (includes SpoIVFB) compare
H281DRAFT_05748 -0.9 -4.5 response regulator receiver protein compare
H281DRAFT_00795 -0.9 -5.1 inorganic phosphate transporter, PiT family compare
H281DRAFT_03144 -0.9 -3.5 putative phosphoesterase compare
H281DRAFT_01290 -0.9 -3.0 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) compare
H281DRAFT_00453 -0.9 -2.3 two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL compare
H281DRAFT_03017 -0.9 -2.1 ketopantoate reductase compare
H281DRAFT_02136 -0.8 -1.6 hypothetical protein compare
H281DRAFT_02231 -0.8 -1.1 7-carboxy-7-deazaguanine synthase, Cx14CxxC type compare
H281DRAFT_01319 -0.8 -1.7 Uncharacterized protein, UPF0264 family compare
H281DRAFT_01366 -0.8 -2.1 hypothetical protein compare
H281DRAFT_05022 -0.8 -1.1 two component transcriptional regulator, LuxR family compare
H281DRAFT_03974 -0.8 -1.9 3-oxoacyl-[acyl-carrier-protein] synthase-1 compare
H281DRAFT_06445 -0.8 -1.2 Molybdopterin synthase catalytic subunit compare
H281DRAFT_06127 -0.8 -2.2 hypothetical protein compare
H281DRAFT_02205 -0.8 -0.6 transcriptional regulator, TraR/DksA family compare
H281DRAFT_06023 -0.8 -3.0 hypothetical protein compare
H281DRAFT_02036 -0.8 -3.1 Thiol-disulfide isomerase or thioredoxin compare
H281DRAFT_05646 -0.8 -1.6 hypothetical protein compare
H281DRAFT_02832 -0.8 -1.8 hypothetical protein compare
H281DRAFT_05922 -0.8 -1.9 hypothetical protein compare
H281DRAFT_00654 -0.8 -2.0 putative spermidine/putrescine transport system substrate-binding protein compare
H281DRAFT_06037 -0.8 -1.6 molybdate transport system substrate-binding protein compare
H281DRAFT_00046 -0.8 -1.6 Predicted periplasmic or secreted lipoprotein compare
H281DRAFT_00219 -0.8 -3.7 nitrogen regulatory protein P-II family compare
H281DRAFT_02530 -0.8 -4.0 transcriptional regulator, IclR family compare
H281DRAFT_05214 -0.8 -2.3 transcriptional regulator, LacI family compare
H281DRAFT_02956 -0.8 -2.3 transcriptional regulator, GntR family compare
H281DRAFT_04628 -0.8 -2.1 FdhD protein compare
H281DRAFT_06509 -0.8 -1.7 hypothetical protein compare
H281DRAFT_01770 -0.8 -2.5 hypothetical protein compare
H281DRAFT_00852 -0.8 -2.8 acetyl-CoA acetyltransferase compare
H281DRAFT_04208 -0.8 -3.2 RecA protein compare
H281DRAFT_04263 -0.8 -2.9 putative redox protein compare
H281DRAFT_02339 -0.8 -5.6 glutamate-cysteine ligase compare
H281DRAFT_00465 -0.8 -1.5 PAS/PAC sensor signal transduction histidine kinase /multi-sensor signal transduction histidine kinase compare
H281DRAFT_00799 -0.8 -4.8 PhoH-like ATPase compare
H281DRAFT_02425 -0.7 -4.2 NAD-dependent aldehyde dehydrogenases compare
H281DRAFT_02102 -0.7 -2.7 Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC compare
H281DRAFT_02910 -0.7 -1.5 conserved hypothetical protein compare
H281DRAFT_05071 -0.7 -1.6 ammonium transporter compare
H281DRAFT_01289 -0.7 -1.1 mxaA protein compare
H281DRAFT_04162 -0.7 -3.3 zinc/manganese transport system substrate-binding protein compare
H281DRAFT_06474 -0.7 -1.5 amino acid ABC transporter membrane protein 1, PAAT family compare
H281DRAFT_00444 -0.7 -0.7 N-acetylglutamate synthase compare
H281DRAFT_00270 -0.7 -2.4 Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family compare
H281DRAFT_02509 -0.7 -3.0 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_00958 -0.7 -2.6 Membrane protein involved in the export of O-antigen and teichoic acid compare
H281DRAFT_03005 -0.7 -2.0 hypothetical protein compare
H281DRAFT_03266 -0.7 -1.2 Nicotinamidase-related amidase compare
H281DRAFT_01814 -0.7 -2.8 transcriptional regulator, XRE family with cupin sensor compare
H281DRAFT_00854 -0.7 -3.5 polyhydroxyalkanoate synthesis repressor PhaR compare
H281DRAFT_01821 -0.7 -1.5 Predicted lipid-binding transport protein, Tim44 family compare
H281DRAFT_00199 -0.7 -1.8 uroporphyrinogen III methyltransferase / synthase compare
H281DRAFT_04562 -0.7 -1.5 polyribonucleotide nucleotidyltransferase compare
H281DRAFT_02532 -0.7 -1.5 Sugar phosphate isomerase/epimerase compare
H281DRAFT_02065 -0.7 -1.5 rfaE bifunctional protein, domain II compare
H281DRAFT_03408 -0.7 -1.7 Transmembrane transcriptional regulator (anti-sigma factor RsiW) compare
H281DRAFT_04057 -0.7 -3.6 acetylornithine aminotransferase apoenzyme compare
H281DRAFT_02743 -0.7 -1.4 protein of unknown function (DUF4148) compare
H281DRAFT_01993 -0.7 -4.9 cytochrome c oxidase subunit 1 compare
H281DRAFT_01843 -0.7 -2.7 Predicted arabinose efflux permease, MFS family compare
H281DRAFT_00712 -0.7 -3.8 RNAse R compare
H281DRAFT_04776 -0.7 -2.2 GDPmannose 4,6-dehydratase compare
H281DRAFT_04805 -0.7 -1.1 methyltransferase, FkbM family compare
H281DRAFT_06197 -0.7 -1.5 hypothetical protein compare
H281DRAFT_06419 -0.7 -1.1 putative toxin-antitoxin system antitoxin component, TIGR02293 family compare
H281DRAFT_00608 -0.7 -3.0 UTP--GlnB (protein PII) uridylyltransferase, GlnD compare
H281DRAFT_01815 -0.7 -2.5 L-amino acid N-acyltransferase YncA compare
H281DRAFT_00471 -0.7 -4.1 transcriptional regulator, IclR family compare
H281DRAFT_04552 -0.7 -2.7 acetolactate synthase, small subunit compare
H281DRAFT_02561 -0.6 -1.5 NADP-dependent 3-hydroxy acid dehydrogenase YdfG compare
H281DRAFT_03201 -0.6 -1.1 transcriptional regulator, XRE family compare
H281DRAFT_00290 -0.6 -1.2 Cytochrome c553 compare
H281DRAFT_06555 -0.6 -1.7 hypothetical protein compare
H281DRAFT_04676 -0.6 -1.7 hypothetical protein compare
H281DRAFT_00504 -0.6 -3.1 hypothetical protein compare
H281DRAFT_03931 -0.6 -1.6 phosphoglycolate phosphatase compare
H281DRAFT_01990 -0.6 -3.7 cytochrome c oxidase subunit 3 compare
H281DRAFT_03009 -0.6 -2.0 acetyl coenzyme A synthetase (ADP forming), alpha domain-containing protein compare
H281DRAFT_04164 -0.6 -2.9 zinc/manganese transport system permease protein compare
H281DRAFT_01502 -0.6 -2.9 Protein of unknown function (DUF2917) compare
H281DRAFT_03154 -0.6 -1.5 two-component system, NarL family, sensor kinase compare
H281DRAFT_05494 -0.6 -0.9 DNA-binding transcriptional regulator, GntR family compare
H281DRAFT_03576 -0.6 -1.2 two-component system, chemotaxis family, response regulator CheY compare
H281DRAFT_00812 -0.6 -1.2 molybdopterin molybdotransferase compare
H281DRAFT_02411 -0.6 -3.0 aminomethyltransferase compare
H281DRAFT_03110 -0.6 -2.2 concentrative nucleoside transporter, CNT family compare
H281DRAFT_01684 -0.6 -2.6 transcriptional regulator, TetR family compare
H281DRAFT_01261 -0.6 -1.5 putative spermidine/putrescine transport system permease protein compare
H281DRAFT_05742 -0.6 -3.9 CheA signal transduction histidine kinase compare
H281DRAFT_06104 -0.6 -2.7 peptide/nickel transport system ATP-binding protein compare
H281DRAFT_02641 -0.6 -2.3 putative copper resistance protein D compare
H281DRAFT_01283 -0.6 -3.3 Pimeloyl-ACP methyl ester carboxylesterase compare
H281DRAFT_04640 -0.6 -1.6 dimethyladenosine transferase compare
H281DRAFT_02232 -0.6 -3.8 preQ(0) biosynthesis protein QueC compare
H281DRAFT_04876 -0.6 -0.8 hypothetical protein compare
H281DRAFT_00719 -0.6 -2.1 polysaccharide export outer membrane protein compare
H281DRAFT_01311 -0.6 -1.4 fructose-bisphosphate aldolase compare
H281DRAFT_02942 -0.6 -1.5 glycerate dehydrogenase compare
H281DRAFT_05279 -0.6 -1.2 malonate decarboxylase beta subunit compare
H281DRAFT_02424 -0.6 -3.4 Phenylacetate-coenzyme A ligase PaaK, adenylate-forming domain family compare
H281DRAFT_02409 -0.6 -5.0 glycine dehydrogenase compare
H281DRAFT_01420 -0.6 -2.9 oxidoreductase alpha (molybdopterin) subunit compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Protocatechuic Acid in Paraburkholderia bryophila 376MFSha3.1

For carbon source Protocatechuic Acid across organisms