Experiment set6IT030 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

Protocatechuic Acid carbon source

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_05327 +1.1 8.0 Outer membrane protein (porin) compare
H281DRAFT_04359 +0.9 1.6 Glutaredoxin and related proteins compare
H281DRAFT_04391 +0.9 7.6 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_05003 +0.9 2.9 type III secretion apparatus lipoprotein, YscJ/HrcJ family compare
H281DRAFT_05767 +0.9 3.0 flagellar basal-body rod protein FlgG compare
H281DRAFT_04390 +0.9 7.0 ATP-binding cassette, subfamily B compare
H281DRAFT_05389 +0.8 1.9 protein of unknown function (DUF3331) compare
H281DRAFT_05563 +0.8 1.6 Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC compare
H281DRAFT_01125 +0.8 1.5 protein of unknown function (DUF2760) compare
H281DRAFT_03047 +0.8 1.5 protein of unknown function (DUF4148) compare
H281DRAFT_03822 +0.8 3.2 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_06388 +0.7 2.8 Sugar phosphate permease compare
H281DRAFT_04482 +0.7 1.5 NAD(P)H dehydrogenase (quinone) compare
H281DRAFT_03285 +0.7 3.2 lipopolysaccharide heptosyltransferase II compare
H281DRAFT_05123 +0.7 1.9 hypothetical protein compare
H281DRAFT_04427 +0.7 3.2 hypothetical protein compare
H281DRAFT_01028 +0.7 1.4 peptide/nickel transport system permease protein compare
H281DRAFT_05330 +0.7 2.3 urea transporter compare
H281DRAFT_05502 +0.7 1.7 transketolase subunit B compare
H281DRAFT_03130 +0.7 1.9 transcriptional regulator, XRE family with cupin sensor compare
H281DRAFT_01486 +0.7 3.1 hypothetical protein compare
H281DRAFT_04433 +0.7 2.9 Undecaprenyl-diphosphatase compare
H281DRAFT_01295 +0.6 3.4 Cytochrome C oxidase, cbb3-type, subunit III compare
H281DRAFT_06422 +0.6 1.0 hypothetical protein compare
H281DRAFT_04039 +0.6 1.8 hypothetical protein compare
H281DRAFT_00248 +0.6 2.4 hypothetical protein compare
H281DRAFT_01706 +0.6 1.7 transcriptional regulator, MarR family compare
H281DRAFT_04270 +0.6 4.6 L-glutamate-binding protein /L-aspartate-binding protein compare
H281DRAFT_01108 +0.6 1.9 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_01236 +0.6 2.6 Protein-tyrosine-phosphatase compare
H281DRAFT_01142 +0.6 1.4 2,5-furandicarboxylate decarboxylase 2 compare
H281DRAFT_06385 +0.6 1.7 hypothetical protein compare
H281DRAFT_01304 +0.6 2.7 formaldehyde activating enzyme compare
H281DRAFT_02369 +0.6 2.6 Protein of unknown function (DUF3717) compare
H281DRAFT_05809 +0.6 3.6 Uncharacterized membrane protein compare
H281DRAFT_00885 +0.6 3.4 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ compare
H281DRAFT_00086 +0.6 2.1 urease subunit beta compare
H281DRAFT_00690 +0.6 2.2 NADPH:quinone reductase compare
H281DRAFT_06320 +0.6 1.9 biopolymer transport protein ExbD compare
H281DRAFT_05724 +0.6 3.7 3-oxo-5,6-didehydrosuberyl-CoA semialdehyde dehydrogenase PaaZ (EC:1.2.1.91) (from data) compare
H281DRAFT_05537 +0.6 1.1 transcriptional regulator, IclR family compare
H281DRAFT_00861 +0.6 2.8 hypothetical protein compare
H281DRAFT_06297 +0.6 0.9 L-arabinose-binding protein compare
H281DRAFT_03572 +0.6 2.3 Crotonobetainyl-CoA:carnitine CoA-transferase CaiB compare
H281DRAFT_05535 +0.6 1.6 YD repeat-containing protein compare
H281DRAFT_05756 +0.6 2.2 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG compare
H281DRAFT_01021 +0.6 2.0 Nitroreductase compare
H281DRAFT_05078 +0.6 3.2 hypothetical protein compare
H281DRAFT_04721 +0.6 1.2 Cell division and transport-associated protein TolR compare
H281DRAFT_04544 +0.6 1.5 diacylglycerol kinase (ATP) compare
H281DRAFT_00687 +0.6 2.0 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
H281DRAFT_03163 +0.6 1.9 Protein of unknown function (DUF3348) compare
H281DRAFT_04523 +0.6 3.8 uracil phosphoribosyltransferase compare
H281DRAFT_03738 +0.6 1.5 hypothetical protein compare
H281DRAFT_03159 +0.6 1.2 hypothetical protein compare
H281DRAFT_01894 +0.6 1.5 transcriptional regulator, MarR family compare
H281DRAFT_05265 +0.6 2.0 hypothetical protein compare
H281DRAFT_03454 +0.6 0.9 Ribulose-5-phosphate 4-epimerase/Fuculose-1-phosphate aldolase compare
H281DRAFT_02067 +0.6 2.5 hypothetical protein compare
H281DRAFT_01512 +0.6 2.3 transcriptional regulator, IclR family compare
H281DRAFT_05480 +0.5 1.9 Nucleotide-binding universal stress protein, UspA family compare
H281DRAFT_00877 +0.5 2.7 large conductance mechanosensitive channel compare
H281DRAFT_05210 +0.5 1.2 Sugar phosphate isomerase/epimerase compare
H281DRAFT_00996 +0.5 1.6 ChrR Cupin-like domain-containing protein compare
H281DRAFT_00677 +0.5 2.0 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_06041 +0.5 1.9 Tautomerase enzyme compare
H281DRAFT_02610 +0.5 2.6 methyl-accepting chemotaxis sensory transducer with Cache sensor compare
H281DRAFT_00653 +0.5 2.8 Enoyl-CoA hydratase/carnithine racemase compare
H281DRAFT_04946 +0.5 2.8 putative spermidine/putrescine transport system ATP-binding protein compare
H281DRAFT_00254 +0.5 4.0 DNA (cytosine-5)-methyltransferase 1 compare
H281DRAFT_00250 +0.5 3.0 hypothetical protein compare
H281DRAFT_04643 +0.5 2.4 methylmalonyl-CoA epimerase compare
H281DRAFT_04863 +0.5 2.1 hypothetical protein compare
H281DRAFT_03795 +0.5 1.8 hypothetical protein compare
H281DRAFT_06399 +0.5 1.1 transcriptional regulator, GntR family compare
H281DRAFT_05952 +0.5 2.3 transcriptional regulator, LysR family compare
H281DRAFT_04848 +0.5 2.0 hypothetical protein compare
H281DRAFT_03751 +0.5 1.4 transcriptional regulator, IclR family compare
H281DRAFT_06356 +0.5 1.9 RraA famliy compare
H281DRAFT_05902 +0.5 1.4 2-Methylisocitrate lyase, PEP mutase family compare
H281DRAFT_05882 +0.5 2.0 amino acid ABC transporter substrate-binding protein, PAAT family compare
H281DRAFT_02888 +0.5 2.2 hypothetical protein compare
H281DRAFT_04406 +0.5 1.4 putative RNA-binding protein, YhbY family compare
H281DRAFT_05759 +0.5 0.7 flagella synthesis protein FlgN compare
H281DRAFT_04837 +0.5 3.9 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family compare
H281DRAFT_03036 +0.5 1.8 hypothetical protein compare
H281DRAFT_00405 +0.5 1.1 Predicted small secreted protein compare
H281DRAFT_05633 +0.5 2.0 hypothetical protein compare
H281DRAFT_05776 +0.5 1.6 flagellar biosynthetic protein FliP compare
H281DRAFT_03418 +0.5 1.2 3-hydroxyisobutyrate dehydrogenase compare
H281DRAFT_06576 +0.5 0.9 CheY chemotaxis protein or a CheY-like REC (receiver) domain compare
H281DRAFT_04467 +0.5 3.1 UDP-glucose pyrophosphorylase compare
H281DRAFT_06536 +0.5 2.0 rare lipoprotein A compare
H281DRAFT_04673 +0.5 2.5 transcriptional regulator, LysR family compare
H281DRAFT_04594 +0.5 1.2 putative oxepin-CoA hydrolase (EC 3.3.2.12) (from data) compare
H281DRAFT_06562 +0.5 1.2 hypothetical protein compare
H281DRAFT_05315 +0.5 1.0 5-dehydro-4-deoxy-D-glucarate aldolase (EC 4.1.2.20) compare
H281DRAFT_00836 +0.5 3.1 NitT/TauT family transport system substrate-binding protein compare
H281DRAFT_05945 +0.5 2.2 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_00315 +0.5 2.6 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_04889 +0.5 1.3 hypothetical protein compare
H281DRAFT_06441 +0.5 1.6 cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein (EC 1.10.3.10) compare
H281DRAFT_03414 +0.5 1.2 outer membrane surface antigen compare
H281DRAFT_05387 +0.5 1.8 Pimeloyl-ACP methyl ester carboxylesterase compare
H281DRAFT_03880 +0.5 3.5 isoquinoline 1-oxidoreductase, beta subunit compare
H281DRAFT_02058 +0.5 0.8 cholesterol transport system auxiliary component compare
H281DRAFT_04269 +0.5 3.3 L-glutamate ABC transporter membrane protein /L-aspartate ABC transporter membrane protein compare
H281DRAFT_05269 +0.5 2.0 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_00226 +0.5 1.5 Heavy-metal resistance compare
H281DRAFT_05249 +0.5 2.0 hypothetical protein compare
H281DRAFT_01181 +0.5 2.2 Acyl-CoA synthetase (NDP forming) compare
H281DRAFT_03844 +0.5 1.7 L-glutamine synthetase (EC 6.3.1.2) compare
H281DRAFT_03278 +0.5 1.0 Threonine dehydrogenase compare
H281DRAFT_03283 +0.5 1.5 Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase compare
H281DRAFT_05281 +0.4 0.9 triphosphoribosyl-dephospho-CoA synthase compare
H281DRAFT_03399 +0.4 1.6 cytochrome bd-I ubiquinol oxidase subunit 2 apoprotein (EC 1.10.3.10) compare
H281DRAFT_06220 +0.4 1.5 hypothetical protein compare
H281DRAFT_02147 +0.4 1.8 tRNA_Ala_CGC compare
H281DRAFT_03821 +0.4 1.5 serine/threonine protein kinase compare
H281DRAFT_01101 +0.4 1.0 Small-conductance mechanosensitive channel compare
H281DRAFT_06466 +0.4 1.8 luciferase family oxidoreductase, group 1 compare
H281DRAFT_01809 +0.4 1.1 3-dehydroquinate dehydratase compare
H281DRAFT_00010 +0.4 1.6 nitrile hydratase compare
H281DRAFT_05678 +0.4 1.2 hypothetical protein compare
H281DRAFT_00752 +0.4 1.8 hypothetical protein compare
H281DRAFT_01257 +0.4 1.3 Catechol 2,3-dioxygenase compare
H281DRAFT_05915 +0.4 1.2 hypothetical protein compare
H281DRAFT_02329 +0.4 1.5 dihydroxyacid dehydratase compare
H281DRAFT_04170 +0.4 2.9 multidrug efflux pump compare
H281DRAFT_03634 +0.4 1.2 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin subunit compare
H281DRAFT_04008 +0.4 1.4 RNAse PH compare
H281DRAFT_06547 +0.4 1.3 RNA polymerase sigma-70 factor, ECF subfamily compare
H281DRAFT_05910 +0.4 0.8 hypothetical protein compare
H281DRAFT_06393 +0.4 1.7 N-carbamoyl-L-amino-acid hydrolase compare
H281DRAFT_00408 +0.4 1.8 Protein of unknown function (DUF1328) compare
H281DRAFT_03905 +0.4 2.2 D-methionine transport system permease protein compare
H281DRAFT_00896 +0.4 1.3 ATP-dependent Clp protease proteolytic subunit ClpP compare
H281DRAFT_05629 +0.4 1.8 hypothetical protein compare
H281DRAFT_01538 +0.4 2.1 RNA polymerase sigma-70 factor, ECF subfamily compare
H281DRAFT_00375 +0.4 0.6 benzoyl-CoA oxygenase, component A compare
H281DRAFT_06170 +0.4 1.3 hypothetical protein compare
H281DRAFT_05985 +0.4 2.0 Predicted integral membrane protein compare
H281DRAFT_05305 +0.4 2.7 Signal transduction histidine kinase compare
H281DRAFT_03314 +0.4 0.9 hypothetical protein compare
H281DRAFT_05816 +0.4 3.4 soluble lytic murein transglycosylase compare
H281DRAFT_06164 +0.4 1.1 protein of unknown function (DUF4400) compare
H281DRAFT_01914 +0.4 2.1 Predicted PurR-regulated permease PerM compare
H281DRAFT_05763 +0.4 2.0 flagellar basal-body rod protein FlgC compare
H281DRAFT_03495 +0.4 1.7 transcriptional regulator, XRE family compare
H281DRAFT_06056 +0.4 2.9 histidine kinase (EC 2.7.13.3) compare
H281DRAFT_01377 +0.4 1.0 hypothetical protein compare
H281DRAFT_00796 +0.4 1.6 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_03734 +0.4 1.6 carbohydrate ABC transporter ATP-binding protein, CUT1 family compare
H281DRAFT_03873 +0.4 1.3 protein of unknown function (DUF4148) compare
H281DRAFT_02685 +0.4 1.8 Uncharacterized damage-inducible protein DinB (forms a four-helix bundle) compare
H281DRAFT_02349 +0.4 2.4 general secretion pathway protein J compare
H281DRAFT_05883 +0.4 2.3 ornithine cyclodeaminase (EC 4.3.1.12) compare
H281DRAFT_03784 +0.4 2.1 protein phosphatase compare
H281DRAFT_06085 +0.4 1.2 transcriptional regulator, AraC family compare
H281DRAFT_01293 +0.4 2.7 hypothetical protein compare
H281DRAFT_00763 +0.4 1.3 hypothetical protein compare
H281DRAFT_03878 +0.4 1.3 xylose ABC transporter ATP-binding protein compare
H281DRAFT_05920 +0.4 2.1 transcriptional regulator, LacI family compare
H281DRAFT_00753 +0.4 1.0 Protein of unknown function (DUF1488) compare
H281DRAFT_04802 +0.4 1.6 negative transcriptional regulator, PaiB family compare
H281DRAFT_04745 +0.4 1.7 hypothetical protein compare
H281DRAFT_05819 +0.4 2.1 tRNA nucleotidyltransferase (CCA-adding enzyme) compare
H281DRAFT_00419 +0.4 1.4 transcriptional regulator, LacI family compare
H281DRAFT_05739 +0.4 2.3 chemotaxis protein MotA compare
H281DRAFT_03879 +0.4 2.2 xylose ABC transporter membrane protein compare
H281DRAFT_00927 +0.4 2.3 UPF0755 protein compare
H281DRAFT_05437 +0.4 2.3 Sugar phosphate permease compare
H281DRAFT_04877 +0.4 2.1 Predicted dithiol-disulfide oxidoreductase, DUF899 family compare
H281DRAFT_06427 +0.4 1.1 Molecular chaperone IbpA, HSP20 family compare
H281DRAFT_03010 +0.4 1.6 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) compare
H281DRAFT_01632 +0.4 3.1 LuxR family transcriptional regulator, quorum-sensing transcription factor LasR compare
H281DRAFT_04171 +0.4 2.4 membrane fusion protein, multidrug efflux system compare
H281DRAFT_05914 +0.4 1.9 hypothetical protein compare
H281DRAFT_01436 +0.4 1.2 NTE family protein compare
H281DRAFT_01462 +0.4 1.3 cyclopropane-fatty-acyl-phospholipid synthase compare
H281DRAFT_01704 +0.4 1.3 hypothetical protein compare
H281DRAFT_05221 +0.4 1.5 Saccharopine dehydrogenase, NADP-dependent compare
H281DRAFT_00075 +0.4 1.3 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_03413 +0.4 2.1 high affinity sulphate transporter 1 compare
H281DRAFT_04268 +0.4 3.3 L-glutamate ABC transporter membrane protein /L-aspartate ABC transporter membrane protein compare
H281DRAFT_06035 +0.4 1.7 esterase, PHB depolymerase family compare
H281DRAFT_04873 +0.4 1.3 histidine ammonia-lyase compare
H281DRAFT_03896 +0.4 2.1 hypothetical protein compare
H281DRAFT_05146 +0.4 1.7 methyltransferase, TIGR00027 family compare
H281DRAFT_00272 +0.4 1.6 Glyoxalase-like domain-containing protein compare
H281DRAFT_06490 +0.4 1.1 hypothetical protein compare
H281DRAFT_00686 +0.4 1.8 CHAD domain-containing protein compare
H281DRAFT_05505 +0.4 2.0 hypothetical protein compare
H281DRAFT_03798 +0.4 1.0 NitT/TauT family transport system permease protein compare
H281DRAFT_04601 +0.4 2.7 hypothetical protein compare
H281DRAFT_01234 +0.4 2.5 hypothetical protein compare
H281DRAFT_03437 +0.4 1.1 Glycosyltransferases involved in cell wall biogenesis compare
H281DRAFT_00984 +0.4 2.7 transcriptional regulator, GntR family compare
H281DRAFT_05888 +0.4 1.4 carbohydrate ABC transporter ATP-binding protein, CUT1 family compare
H281DRAFT_01070 +0.4 1.7 methyl-accepting chemotaxis sensory transducer with Cache sensor compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Protocatechuic Acid in Paraburkholderia bryophila 376MFSha3.1

For carbon source Protocatechuic Acid across organisms