Experiment set6IT029 for Phaeobacter inhibens DSM 17395

Compare to:

marine broth with benzoic acid 0.145 mg/ml

Group: stress
Media: marine_broth_2216 + benzoic acid (0.145 mg/ml)
Culturing: Phaeo_ML1, 48 well microplate; Tecan Infinite F200, Aerobic, at 25 (C), shaken=orbital
By: Adam on marchapr14
Media components: 5 g/L Bacto Peptone, 1 g/L Yeast Extract, 0.1 g/L Ferric citrate, 19.45 g/L Sodium Chloride, 5.9 g/L Magnesium chloride hexahydrate, 3.24 g/L Magnesium sulfate, 1.8 g/L Calcium chloride, 0.55 g/L Potassium Chloride, 0.16 g/L Sodium bicarbonate, 0.08 g/L Potassium bromide, 34 mg/L Strontium chloride, 22 mg/L Boric Acid, 4 mg/L Sodium metasilicate, 2.4 mg/L sodium fluoride, 8 mg/L Disodium phosphate
Growth plate: 831 F5,F6

Specific Phenotypes

For 2 genes in this experiment

For stress benzoic acid in Phaeobacter inhibens DSM 17395

For stress benzoic acid across organisms

SEED Subsystems

Subsystem #Specific
p-Hydroxybenzoate degradation 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
4-methylphenol degradation to protocatechuate 4 1 1
4-chlorobenzoate degradation 4 1 1
bisphenol A degradation 5 1 1
4-coumarate degradation (aerobic) 5 1 1
4-hydroxymandelate degradation 6 1 1
spongiadioxin C biosynthesis 7 1 1
polybrominated dihydroxylated diphenyl ethers biosynthesis 8 1 1
toluene degradation III (aerobic) (via p-cresol) 11 7 1
superpathway of aerobic toluene degradation 30 11 1
superpathway of aromatic compound degradation via 3-oxoadipate 35 14 1
superpathway of aromatic compound degradation via 2-hydroxypentadienoate 42 10 1