Experiment set6IT028 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs

200 most important genes:

  gene name fitness t score description  
PFLU_RS02790 -5.4 -2.3 TetR family transcriptional regulator compare
PFLU_RS13120 -5.1 -2.2 hypothetical protein compare
PFLU_RS31215 -4.8 -3.0 hypothetical protein compare
PFLU_RS06055 -4.5 -1.8 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS31840 -4.4 -1.5 hypothetical protein compare
PFLU_RS31800 -4.4 -2.5 hypothetical protein compare
PFLU_RS02365 -4.3 -14.1 glycosyltransferase compare
PFLU_RS29545 -4.3 -5.8 hydrogen peroxide-inducible genes activator compare
PFLU_RS00190 -4.2 -3.3 DUF883 domain-containing protein compare
PFLU_RS24860 -4.0 -2.8 Fe-S cluster assembly transcriptional regulator IscR compare
PFLU_RS17545 -4.0 -1.4 DUF465 domain-containing protein compare
PFLU_RS00870 -3.8 -2.1 hypothetical protein compare
PFLU_RS13665 -3.6 -1.2 MarR family transcriptional regulator compare
PFLU_RS25755 -3.5 -4.7 pantoate--beta-alanine ligase compare
PFLU_RS26735 -3.4 -10.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS00535 -3.4 -2.6 DUF1127 domain-containing protein compare
PFLU_RS14050 -3.3 -1.9 hypothetical protein compare
PFLU_RS28315 -3.2 -1.1 response regulator compare
PFLU_RS03995 -3.1 -2.0 hypothetical protein compare
PFLU_RS31590 -3.0 -2.0 hypothetical protein compare
PFLU_RS25645 -2.9 -2.0 acetolactate synthase small subunit compare
PFLU_RS28650 -2.8 -7.2 RNA pyrophosphohydrolase compare
PFLU_RS26565 -2.8 -1.7 rRNA maturation RNase YbeY compare
PFLU_RS25205 -2.8 -6.9 cytochrome o ubiquinol oxidase subunit IV compare
PFLU_RS29815 -2.8 -4.5 aspartate ammonia-lyase compare
PFLU_RS07230 -2.7 -9.7 RNA polymerase sigma factor RpoE compare
PFLU_RS28470 -2.6 -5.3 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
PFLU_RS06310 -2.6 -7.7 sigma E protease regulator RseP compare
PFLU_RS24095 -2.6 -2.5 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS20285 -2.6 -6.7 MerR family transcriptional regulator compare
PFLU_RS24090 -2.6 -3.5 Holliday junction branch migration protein RuvA compare
PFLU_RS30160 -2.5 -3.7 ParB/RepB/Spo0J family partition protein compare
PFLU_RS22105 -2.5 -1.7 cysteine synthase CysM compare
PFLU_RS13795 -2.5 -2.7 hypothetical protein compare
PFLU_RS25815 -2.5 -1.2 transcription termination/antitermination protein NusA compare
PFLU_RS05050 -2.5 -2.5 response regulator transcription factor compare
PFLU_RS08760 -2.4 -2.7 phosphonate C-P lyase system protein PhnG compare
PFLU_RS01315 -2.4 -1.6 Hsp33 family molecular chaperone HslO compare
PFLU_RS21925 -2.4 -5.3 YecA family protein compare
PFLU_RS25790 -2.3 -5.9 polyribonucleotide nucleotidyltransferase compare
PFLU_RS29780 -2.3 -6.6 acyl-CoA thioesterase compare
PFLU_RS07275 -2.3 -1.6 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS29310 -2.3 -1.3 accessory factor UbiK family protein compare
PFLU_RS25360 -2.3 -6.4 glutamate 5-kinase compare
PFLU_RS13610 -2.3 -3.5 ABC transporter ATP-binding protein compare
PFLU_RS31310 -2.3 -2.1 phage tail protein compare
PFLU_RS15410 -2.3 -1.5 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS18645 -2.3 -1.5 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS24085 -2.3 -3.4 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS15795 -2.2 -2.3 hypothetical protein compare
PFLU_RS09540 -2.2 -2.9 TIGR03745 family integrating conjugative element membrane protein compare
PFLU_RS25875 -2.2 -1.5 transcription elongation factor GreA compare
PFLU_RS12145 -2.2 -1.3 nuclear transport factor 2 family protein compare
PFLU_RS04070 -2.2 -4.3 peptide chain release factor 3 compare
PFLU_RS28735 -2.2 -4.1 thiol-disulfide isomerase compare
PFLU_RS01660 -2.2 -2.1 rhodanese-like domain-containing protein compare
PFLU_RS05885 -2.2 -4.9 recombinase RecA compare
PFLU_RS28310 -2.1 -1.8 response regulator compare
PFLU_RS17110 -2.1 -4.3 DUF58 domain-containing protein compare
PFLU_RS26635 -2.1 -5.9 D-alanyl-D-alanine carboxypeptidase compare
PFLU_RS04075 -2.1 -1.7 hypothetical protein compare
PFLU_RS30505 -2.0 -4.8 hypothetical protein compare
PFLU_RS21110 -2.0 -1.5 AAA family ATPase compare
PFLU_RS00935 -2.0 -8.0 EAL domain-containing protein compare
PFLU_RS22595 -2.0 -3.2 OmpA family protein compare
PFLU_RS01285 -1.9 -1.1 HAMP domain-containing protein compare
PFLU_RS00210 -1.9 -1.6 OsmC family protein compare
PFLU_RS00410 -1.9 -8.2 cytochrome c4 compare
PFLU_RS18620 -1.9 -3.3 NADH-quinone oxidoreductase subunit B compare
PFLU_RS18640 -1.9 -1.8 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS25200 -1.9 -8.6 protoheme IX farnesyltransferase compare
PFLU_RS18595 -1.8 -4.1 cupin domain-containing protein compare
PFLU_RS28895 -1.8 -1.4 DUF2388 domain-containing protein compare
PFLU_RS22325 -1.8 -5.5 cytochrome-c oxidase, cbb3-type subunit II compare
PFLU_RS28645 -1.8 -9.4 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS08485 -1.8 -1.5 crotonase/enoyl-CoA hydratase family protein compare
PFLU_RS25210 -1.8 -6.6 cytochrome o ubiquinol oxidase subunit III compare
PFLU_RS18530 -1.8 -3.7 DNA translocase FtsK compare
PFLU_RS03610 -1.8 -5.9 redox-regulated ATPase YchF compare
PFLU_RS29550 -1.8 -7.2 ATP-dependent DNA helicase RecG compare
PFLU_RS25715 -1.8 -7.0 RNA polymerase-binding protein DksA compare
PFLU_RS25865 -1.7 -2.8 YhbY family RNA-binding protein compare
PFLU_RS02580 -1.7 -7.5 FtsH protease activity modulator HflK compare
PFLU_RS28210 -1.7 -3.1 RidA family protein compare
PFLU_RS24690 -1.7 -8.6 membrane-bound lytic murein transglycosylase MltF compare
PFLU_RS17750 -1.7 -1.7 pirin family protein compare
PFLU_RS11840 -1.7 -2.9 RNA polymerase sigma factor compare
PFLU_RS25800 -1.7 -3.0 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS29900 -1.7 -8.9 DNA helicase II compare
PFLU_RS18615 -1.7 -1.6 NADH-quinone oxidoreductase subunit A compare
PFLU_RS20730 -1.7 -1.2 hypothetical protein compare
PFLU_RS27420 -1.7 -1.9 response regulator transcription factor compare
PFLU_RS02625 -1.7 -9.3 ribonuclease R compare
PFLU_RS13365 -1.7 -1.0 hypothetical protein compare
PFLU_RS08060 -1.7 -3.3 YciK family oxidoreductase compare
PFLU_RS00405 -1.7 -3.5 cytochrome c5 family protein compare
PFLU_RS07645 -1.6 -3.4 hypothetical protein compare
PFLU_RS04205 -1.6 -2.2 cytochrome c1 compare
PFLU_RS22725 -1.6 -2.3 transcriptional regulator compare
PFLU_RS29480 -1.6 -1.1 exodeoxyribonuclease III compare
PFLU_RS30590 -1.6 -1.2 hypothetical protein compare
PFLU_RS30345 -1.6 -1.8 DUF2559 family protein compare
PFLU_RS14335 -1.6 -2.3 ABC transporter permease compare
PFLU_RS23235 -1.6 -2.6 Arc family DNA-binding protein compare
PFLU_RS04490 -1.6 -2.5 hypoxanthine-guanine phosphoribosyltransferase compare
PFLU_RS22335 -1.6 -5.8 cytochrome-c oxidase, cbb3-type subunit III compare
PFLU_RS04415 -1.6 -2.2 LPS export ABC transporter periplasmic protein LptC compare
PFLU_RS23920 -1.5 -1.2 septation protein A compare
PFLU_RS14395 -1.5 -2.7 DUF664 domain-containing protein compare
PFLU_RS04195 -1.5 -1.8 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PFLU_RS11380 -1.5 -1.2 sarcosine oxidase subunit delta compare
PFLU_RS30170 -1.5 -2.8 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
PFLU_RS00065 -1.5 -7.0 lysophospholipid acyltransferase compare
PFLU_RS27465 -1.5 -3.4 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
PFLU_RS02565 -1.5 -2.5 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS25215 -1.5 -9.0 cytochrome o ubiquinol oxidase subunit I compare
PFLU_RS12260 -1.5 -1.3 hypothetical protein compare
PFLU_RS12220 -1.5 -3.0 AraC family transcriptional regulator compare
PFLU_RS28320 -1.5 -1.0 glutathione synthase compare
PFLU_RS24125 -1.5 -4.4 cold-shock protein compare
PFLU_RS00080 -1.5 -3.9 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB compare
PFLU_RS19665 -1.5 -0.9 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit compare
PFLU_RS26560 -1.5 -4.7 PhoH family protein compare
PFLU_RS17125 -1.5 -4.5 VWA domain-containing protein compare
PFLU_RS01095 -1.5 -2.9 ribbon-helix-helix protein, CopG family compare
PFLU_RS25225 -1.5 -4.5 disulfide bond formation protein B compare
PFLU_RS07525 -1.5 -1.8 cyclic nucleotide-binding domain-containing protein compare
PFLU_RS04635 -1.5 -1.9 BON domain-containing protein compare
PFLU_RS17115 -1.5 -4.1 DUF4381 domain-containing protein compare
PFLU_RS16960 -1.4 -2.4 LysR family transcriptional regulator compare
PFLU_RS04165 -1.4 -6.2 cell division protein ZapE compare
PFLU_RS28820 -1.4 -1.7 aliphatic sulfonates ABC transporter ATP-binding protein compare
PFLU_RS08155 -1.4 -3.0 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS18625 -1.4 -4.9 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS20515 -1.4 -3.1 amidophosphoribosyltransferase compare
PFLU_RS23045 -1.4 -5.5 beta-ketoacyl-ACP synthase II compare
PFLU_RS18635 -1.4 -1.9 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS17105 -1.4 -4.0 MoxR family ATPase compare
PFLU_RS18735 -1.4 -1.1 hypothetical protein compare
PFLU_RS03395 -1.4 -3.3 ribosomal-protein-alanine N-acetyltransferase compare
PFLU_RS25585 -1.4 -0.9 exodeoxyribonuclease V subunit alpha compare
PFLU_RS18675 -1.4 -2.0 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS27475 -1.4 -4.4 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS18820 -1.4 -1.5 acyl-CoA dehydrogenase compare
PFLU_RS23220 -1.4 -1.9 tRNA-Arg compare
PFLU_RS26835 -1.4 -2.4 exodeoxyribonuclease VII small subunit compare
PFLU_RS29905 -1.4 -4.8 Tim44 domain-containing protein compare
PFLU_RS23240 -1.4 -7.4 magnesium transporter compare
PFLU_RS17130 -1.3 -2.7 protein BatD compare
PFLU_RS15905 -1.3 -4.3 helix-turn-helix domain-containing protein compare
PFLU_RS26950 -1.3 -5.9 outer membrane beta-barrel protein compare
PFLU_RS25740 -1.3 -4.3 polynucleotide adenylyltransferase PcnB compare
PFLU_RS14355 -1.3 -1.9 DUF2388 domain-containing protein compare
PFLU_RS13010 -1.3 -3.6 Fe-S biogenesis protein NfuA compare
PFLU_RS18360 -1.3 -5.9 Bax inhibitor-1/YccA family protein compare
PFLU_RS15470 -1.3 -1.9 LysR family transcriptional regulator compare
PFLU_RS02585 -1.3 -4.8 protease modulator HflC compare
PFLU_RS11525 -1.3 -3.3 GntR family transcriptional regulator compare
PFLU_RS18585 -1.3 -1.0 high frequency lysogenization protein HflD compare
PFLU_RS08575 -1.3 -1.5 hypothetical protein compare
PFLU_RS29560 -1.3 -1.0 hypothetical protein compare
PFLU_RS11850 -1.3 -1.6 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
PFLU_RS20845 -1.3 -1.2 hypothetical protein compare
PFLU_RS22600 -1.3 -1.5 RNA polymerase sigma factor SigX compare
PFLU_RS13540 -1.3 -3.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS31065 -1.3 -1.2 helix-turn-helix domain-containing protein compare
PFLU_RS25220 -1.3 -5.7 ubiquinol oxidase subunit II compare
PFLU_RS08160 -1.3 -5.0 sugar transferase compare
PFLU_RS07810 -1.3 -7.4 tRNA dihydrouridine(20/20a) synthase DusA compare
PFLU_RS10430 -1.3 -2.0 peptidase compare
PFLU_RS22360 -1.2 -7.2 cytochrome c oxidase accessory protein CcoG compare
PFLU_RS05690 -1.2 -1.4 Grx4 family monothiol glutaredoxin compare
PFLU_RS06165 -1.2 -2.1 hypothetical protein compare
PFLU_RS21690 -1.2 -1.8 DNA-binding protein compare
PFLU_RS24330 -1.2 -4.2 phosphogluconate dehydratase compare
PFLU_RS24160 -1.2 -3.8 HAMP domain-containing protein compare
PFLU_RS00875 -1.2 -2.8 hypothetical protein compare
PFLU_RS29505 -1.2 -2.1 DNA-directed RNA polymerase subunit omega compare
PFLU_RS21315 -1.2 -5.6 GTP cyclohydrolase I FolE compare
PFLU_RS04220 -1.2 -3.9 FadR family transcriptional regulator compare
PFLU_RS08100 -1.2 -3.3 histidinol-phosphate transaminase compare
PFLU_RS07195 -1.2 -2.8 hypothetical protein compare
PFLU_RS26145 -1.2 -1.3 hypothetical protein compare
PFLU_RS18665 -1.2 -2.0 NADH-quinone oxidoreductase subunit L compare
PFLU_RS29090 -1.2 -4.9 exopolyphosphatase compare
PFLU_RS19160 -1.2 -6.0 endopeptidase La compare
PFLU_RS15380 -1.2 -2.3 DUF1652 domain-containing protein compare
PFLU_RS02555 -1.2 -3.6 AMIN domain-containing protein compare
PFLU_RS30800 -1.2 -2.8 ThiF family adenylyltransferase compare
PFLU_RS31675 -1.2 -1.4 hypothetical protein compare
PFLU_RS29670 -1.2 -2.4 DUF1795 domain-containing protein compare
PFLU_RS27770 -1.2 -3.3 two-component system response regulator CreB compare
PFLU_RS30520 -1.2 -4.3 ketoacyl-ACP synthase III compare
PFLU_RS18420 -1.2 -1.2 hypothetical protein compare
PFLU_RS09575 -1.2 -2.1 FadR family transcriptional regulator compare
PFLU_RS30805 -1.2 -2.9 hypothetical protein compare
PFLU_RS08285 -1.2 -2.7 hypothetical protein compare
PFLU_RS17615 -1.2 -0.7 DeoR/GlpR transcriptional regulator compare
PFLU_RS14555 -1.1 -4.3 glutathione-disulfide reductase compare
PFLU_RS15830 -1.1 -1.5 His-Xaa-Ser system protein HxsD compare


Specific Phenotypes

For 8 genes in this experiment

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs in Pseudomonas fluorescens SBW25-INTG

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs across organisms