Experiment set6IT028 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

Protocatechuic Acid carbon source

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_06296 +1.2 2.0 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_00375 +1.1 2.6 benzoyl-CoA oxygenase, component A compare
H281DRAFT_01125 +1.0 2.5 protein of unknown function (DUF2760) compare
H281DRAFT_01021 +0.9 1.7 Nitroreductase compare
H281DRAFT_04218 +0.9 2.2 hypothetical protein compare
H281DRAFT_01321 +0.9 2.5 probable H4MPT-linked C1 transfer pathway protein compare
H281DRAFT_06422 +0.9 2.0 hypothetical protein compare
H281DRAFT_00050 +0.9 1.6 Uncharacterized conserved protein, DUF1330 family compare
H281DRAFT_01512 +0.8 2.5 transcriptional regulator, IclR family compare
H281DRAFT_04933 +0.8 2.2 Nitroreductase compare
H281DRAFT_05210 +0.8 1.9 Sugar phosphate isomerase/epimerase compare
H281DRAFT_00235 +0.8 2.2 hypothetical protein compare
H281DRAFT_05041 +0.8 1.7 RNA polymerase sigma-70 factor, ECF subfamily compare
H281DRAFT_06399 +0.8 2.2 transcriptional regulator, GntR family compare
H281DRAFT_05502 +0.8 1.7 transketolase subunit B compare
H281DRAFT_05892 +0.8 1.6 carbohydrate ABC transporter substrate-binding protein, CUT1 family compare
H281DRAFT_04744 +0.8 2.6 enoyl-CoA hydratase compare
H281DRAFT_03835 +0.8 2.5 NitT/TauT family transport system permease protein compare
H281DRAFT_01108 +0.8 1.8 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_00406 +0.7 2.2 Signal transduction histidine kinase compare
H281DRAFT_04148 +0.7 2.6 monosaccharide ABC transporter membrane protein, CUT2 family compare
H281DRAFT_05962 +0.7 1.6 RraA famliy compare
H281DRAFT_02873 +0.7 1.8 ketopantoate reductase (EC 1.1.1.169) compare
H281DRAFT_06285 +0.7 1.7 3-dehydroquinate dehydratase compare
H281DRAFT_03798 +0.7 1.9 NitT/TauT family transport system permease protein compare
H281DRAFT_03764 +0.7 1.6 ribulose-bisphosphate carboxylase large chain compare
H281DRAFT_06494 +0.7 1.1 transcriptional regulator, IclR family compare
H281DRAFT_01554 +0.7 1.9 RNA polymerase sigma-70 factor, ECF subfamily compare
H281DRAFT_05438 +0.7 1.8 transcriptional regulator, IclR family compare
H281DRAFT_05480 +0.7 2.3 Nucleotide-binding universal stress protein, UspA family compare
H281DRAFT_04904 +0.7 1.7 outer membrane transport energization protein ExbD compare
H281DRAFT_04773 +0.7 2.7 Undecaprenyl-phosphate glucose phosphotransferase compare
H281DRAFT_01436 +0.6 1.5 NTE family protein compare
H281DRAFT_04878 +0.6 1.9 transcriptional regulator, ArsR family compare
H281DRAFT_05159 +0.6 2.8 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase compare
H281DRAFT_02940 +0.6 1.6 beta-methylmalyl-CoA/L-malyl-CoA lyase (EC 4.1.3.24) compare
H281DRAFT_03367 +0.6 1.1 electron transfer flavoprotein alpha subunit apoprotein compare
H281DRAFT_06017 +0.6 1.2 Exodeoxyribonuclease VII small subunit compare
H281DRAFT_01837 +0.6 1.4 hypothetical protein compare
H281DRAFT_02369 +0.6 2.7 Protein of unknown function (DUF3717) compare
H281DRAFT_06500 +0.6 1.1 Lactate dehydrogenase compare
H281DRAFT_03796 +0.6 1.3 protein of unknown function (DUF4148) compare
H281DRAFT_05983 +0.6 1.6 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_04896 +0.6 1.2 transcriptional regulator, AraC family with amidase-like domain compare
H281DRAFT_05476 +0.6 0.8 Short-chain dehydrogenase compare
H281DRAFT_04880 +0.6 1.5 PRC-barrel domain-containing protein compare
H281DRAFT_05005 +0.6 1.6 type III secretion protein HrpB1 compare
H281DRAFT_05512 +0.6 1.5 branched-chain amino acid transport system ATP-binding protein compare
H281DRAFT_03881 +0.6 1.8 isoquinoline 1-oxidoreductase, alpha subunit compare
H281DRAFT_01028 +0.6 1.1 peptide/nickel transport system permease protein compare
H281DRAFT_05021 +0.6 0.9 Response regulator compare
H281DRAFT_03120 +0.6 1.4 putative spermidine/putrescine transport system permease protein compare
H281DRAFT_03732 +0.6 1.8 carbohydrate ABC transporter membrane protein 1, CUT1 family compare
H281DRAFT_02764 +0.6 2.9 hypothetical protein compare
H281DRAFT_05759 +0.6 1.5 flagella synthesis protein FlgN compare
H281DRAFT_02971 +0.6 1.2 Protein of unknown function (DUF3225) compare
H281DRAFT_05296 +0.5 1.3 GntR family transcriptional regulator, histidine utilization repressor compare
H281DRAFT_06157 +0.5 1.6 hypothetical protein compare
H281DRAFT_00046 +0.5 1.4 Predicted periplasmic or secreted lipoprotein compare
H281DRAFT_05776 +0.5 2.7 flagellar biosynthetic protein FliP compare
H281DRAFT_05534 +0.5 1.7 Zn-dependent dipeptidase, dipeptidase homolog compare
H281DRAFT_01689 +0.5 2.1 transcriptional regulator, AraC family with amidase-like domain compare
H281DRAFT_01590 +0.5 1.8 hypothetical protein compare
H281DRAFT_02576 +0.5 1.8 transcriptional regulator, IclR family compare
H281DRAFT_05784 +0.5 1.2 flagellar assembly protein FliH compare
H281DRAFT_02941 +0.5 1.5 Crotonobetainyl-CoA:carnitine CoA-transferase CaiB compare
H281DRAFT_04391 +0.5 4.4 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_00737 +0.5 1.3 Methylase involved in ubiquinone/menaquinone biosynthesis compare
H281DRAFT_01148 +0.5 1.8 DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain compare
H281DRAFT_00067 +0.5 1.7 transposase, IS4 family compare
H281DRAFT_05879 +0.5 1.6 DNA-binding transcriptional regulator, MarR family compare
H281DRAFT_01318 +0.5 1.4 hypothetical protein compare
H281DRAFT_00861 +0.5 2.7 hypothetical protein compare
H281DRAFT_03844 +0.5 1.8 L-glutamine synthetase (EC 6.3.1.2) compare
H281DRAFT_06471 +0.5 2.4 sulfonate transport system substrate-binding protein compare
H281DRAFT_01746 +0.5 1.7 D-3-phosphoglycerate dehydrogenase compare
H281DRAFT_06502 +0.5 2.3 transcriptional regulator, LysR family compare
H281DRAFT_02644 +0.5 2.5 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase compare
H281DRAFT_02685 +0.5 1.8 Uncharacterized damage-inducible protein DinB (forms a four-helix bundle) compare
H281DRAFT_00704 +0.5 2.7 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) compare
H281DRAFT_02013 +0.5 1.6 nitrogen regulatory protein P-II family compare
H281DRAFT_03728 +0.5 1.4 Uncharacterized conserved protein, DUF1697 family compare
H281DRAFT_05762 +0.5 2.4 flagellar basal-body rod protein FlgB compare
H281DRAFT_00687 +0.5 1.6 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
H281DRAFT_01413 +0.5 1.1 hypothetical protein compare
H281DRAFT_01727 +0.5 2.1 Short-chain dehydrogenase compare
H281DRAFT_00418 +0.5 1.5 putative spermidine/putrescine transport system substrate-binding protein compare
H281DRAFT_01894 +0.5 1.5 transcriptional regulator, MarR family compare
H281DRAFT_03986 +0.5 2.1 Putative Ca2+/H+ antiporter, TMEM165/GDT1 family compare
H281DRAFT_00379 +0.5 1.0 dihydroorotate oxidase B, catalytic subunit /dihydrouracil dehydrogenase (NAD+) /dihydropyrimidine dehydrogenase (NADP+) compare
H281DRAFT_01632 +0.5 3.8 LuxR family transcriptional regulator, quorum-sensing transcription factor LasR compare
H281DRAFT_03324 +0.5 1.6 Low affinity Fe/Cu permease compare
H281DRAFT_00660 +0.5 2.0 Glyoxalase superfamily enzyme, possibly 3-demethylubiquinone-9 3-methyltransferase compare
H281DRAFT_00997 +0.5 1.4 amino acid/amide ABC transporter substrate-binding protein, HAAT family compare
H281DRAFT_05549 +0.5 1.5 citrate lyase subunit beta / citryl-CoA lyase compare
H281DRAFT_05251 +0.5 1.7 Type IV secretory pathway, VirJ component compare
H281DRAFT_02496 +0.5 1.7 transcriptional regulator, GntR family compare
H281DRAFT_00240 +0.5 3.4 two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family compare
H281DRAFT_06511 +0.5 1.1 reactive intermediate/imine deaminase compare
H281DRAFT_02692 +0.5 1.3 nudix-type nucleoside diphosphatase, YffH/AdpP family compare
H281DRAFT_02831 +0.5 1.3 hypothetical protein compare
H281DRAFT_01358 +0.5 2.0 Uncharacterized protein, RmlC-like cupin domain compare
H281DRAFT_02581 +0.5 1.8 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_02579 +0.5 1.2 maleylacetate reductase compare
H281DRAFT_02676 +0.5 2.6 xanthine dehydrogenase, molybdenum binding subunit apoprotein (EC 1.17.1.4) compare
H281DRAFT_03898 +0.5 2.5 DUF2300 domain-containing protein YfaQ compare
H281DRAFT_02789 +0.5 2.1 hypothetical protein compare
H281DRAFT_00422 +0.5 1.5 hypothetical protein compare
H281DRAFT_02514 +0.5 1.9 enoyl-CoA hydratase compare
H281DRAFT_01617 +0.5 2.2 hypothetical protein compare
H281DRAFT_04846 +0.5 1.8 Putative flippase GtrA (transmembrane translocase of bactoprenol-linked glucose) compare
H281DRAFT_02365 +0.5 1.1 2,4-dienoyl-CoA reductase compare
H281DRAFT_03335 +0.5 1.5 transcriptional regulator, LysR family compare
H281DRAFT_00487 +0.5 1.5 bacterial peptide chain release factor 2 (bRF-2) compare
H281DRAFT_02568 +0.5 2.3 Methyl-accepting chemotaxis protein compare
H281DRAFT_04008 +0.5 0.9 RNAse PH compare
H281DRAFT_06514 +0.5 0.8 Glycine/D-amino acid oxidase (deaminating) compare
H281DRAFT_03968 +0.5 1.3 hypothetical protein compare
H281DRAFT_02734 +0.5 2.0 YXWGXW repeat-containing protein compare
H281DRAFT_00722 +0.5 0.9 transcriptional regulator, Crp/Fnr family compare
H281DRAFT_04997 +0.5 0.9 AraC-type DNA-binding protein compare
H281DRAFT_01257 +0.5 1.2 Catechol 2,3-dioxygenase compare
H281DRAFT_04658 +0.5 1.7 putative N6-adenine-specific DNA methylase compare
H281DRAFT_01335 +0.5 1.9 Signal transduction histidine kinase compare
H281DRAFT_01173 +0.5 2.7 Outer membrane protein (porin) compare
H281DRAFT_03320 +0.5 1.7 Uncharacterized conserved protein compare
H281DRAFT_01192 +0.5 1.0 Glycine/D-amino acid oxidase (deaminating) compare
H281DRAFT_03892 +0.5 2.4 Uncharacterized membrane protein, predicted cobalt tansporter CbtA compare
H281DRAFT_02577 +0.5 2.2 Sugar phosphate isomerase/epimerase compare
H281DRAFT_01441 +0.4 0.9 two component heavy metal response transcriptional regulator, winged helix family compare
H281DRAFT_01444 +0.4 1.6 Multidrug efflux pump subunit AcrB compare
H281DRAFT_01717 +0.4 0.7 L-alanine-DL-glutamate epimerase compare
H281DRAFT_01002 +0.4 1.0 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ compare
H281DRAFT_04359 +0.4 0.7 Glutaredoxin and related proteins compare
H281DRAFT_01151 +0.4 2.2 ceramide glucosyltransferase compare
H281DRAFT_02903 +0.4 1.6 L-lactate dehydrogenase complex protein LldG compare
H281DRAFT_03859 +0.4 1.2 hypothetical protein compare
H281DRAFT_01750 +0.4 1.9 PAS domain S-box-containing protein compare
H281DRAFT_05521 +0.4 2.0 3-hydroxyacyl-CoA dehydrogenase compare
H281DRAFT_01311 +0.4 1.2 fructose-bisphosphate aldolase compare
H281DRAFT_04699 +0.4 1.5 hypothetical protein compare
H281DRAFT_02794 +0.4 1.8 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
H281DRAFT_00269 +0.4 2.4 phenazine biosynthesis protein PhzF family compare
H281DRAFT_03127 +0.4 1.6 oligopeptide transport system permease protein compare
H281DRAFT_03582 +0.4 1.6 hypothetical protein compare
H281DRAFT_05756 +0.4 1.6 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG compare
H281DRAFT_03273 +0.4 1.7 Uncharacterized membrane protein YqjE compare
H281DRAFT_05398 +0.4 2.0 hypothetical protein compare
H281DRAFT_03721 +0.4 1.9 Threonine/homoserine efflux transporter RhtA compare
H281DRAFT_05123 +0.4 1.0 hypothetical protein compare
H281DRAFT_01572 +0.4 1.0 Predicted oxidoreductase compare
H281DRAFT_05396 +0.4 2.8 lipoprotein NlpD compare
H281DRAFT_03497 +0.4 1.6 transcriptional regulator, DeoR family compare
H281DRAFT_03839 +0.4 1.2 hypothetical protein compare
H281DRAFT_00254 +0.4 2.7 DNA (cytosine-5)-methyltransferase 1 compare
H281DRAFT_00710 +0.4 0.8 tRNA_Leu_CAG compare
H281DRAFT_02691 +0.4 1.7 transcriptional regulator, ArsR family compare
H281DRAFT_04539 +0.4 1.4 Uncharacterized conserved protein, DUF924 family compare
H281DRAFT_01943 +0.4 1.6 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) compare
H281DRAFT_05281 +0.4 0.7 triphosphoribosyl-dephospho-CoA synthase compare
H281DRAFT_06490 +0.4 1.1 hypothetical protein compare
H281DRAFT_05334 +0.4 1.1 Short-chain dehydrogenase compare
H281DRAFT_05891 +0.4 1.9 carbohydrate ABC transporter membrane protein 1, CUT1 family compare
H281DRAFT_04826 +0.4 1.1 rhamnosyltransferase compare
H281DRAFT_00333 +0.4 2.0 L-ascorbate metabolism protein UlaG, beta-lactamase superfamily compare
H281DRAFT_04453 +0.4 1.5 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family compare
H281DRAFT_03678 +0.4 2.1 hypothetical protein compare
H281DRAFT_05695 +0.4 1.0 hypothetical protein compare
H281DRAFT_03285 +0.4 1.2 lipopolysaccharide heptosyltransferase II compare
H281DRAFT_03753 +0.4 1.9 Glyoxylase, beta-lactamase superfamily II compare
H281DRAFT_03297 +0.4 0.9 ADP-ribose pyrophosphatase YjhB, NUDIX family compare
H281DRAFT_00347 +0.4 0.9 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
H281DRAFT_02351 +0.4 2.4 general secretion pathway protein H compare
H281DRAFT_02709 +0.4 1.4 GntR family transcriptional regulator compare
H281DRAFT_00875 +0.4 1.8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
H281DRAFT_00441 +0.4 1.9 hypothetical protein compare
H281DRAFT_01931 +0.4 2.5 UPF0042 nucleotide-binding protein compare
H281DRAFT_03262 +0.4 2.4 Sulfotransferase family compare
H281DRAFT_03714 +0.4 1.9 transcriptional regulator, LysR family compare
H281DRAFT_06327 +0.4 1.2 2-methylcitrate synthase compare
H281DRAFT_00869 +0.4 1.6 putative ABC transport system permease protein compare
H281DRAFT_04390 +0.4 2.9 ATP-binding cassette, subfamily B compare
H281DRAFT_04266 +0.4 1.2 glutamine amidotransferase compare
H281DRAFT_03117 +0.4 1.7 sarcosine oxidase subunit beta compare
H281DRAFT_03738 +0.4 1.5 hypothetical protein compare
H281DRAFT_01065 +0.4 1.2 NitT/TauT family transport system substrate-binding protein compare
H281DRAFT_05315 +0.4 0.9 5-dehydro-4-deoxy-D-glucarate aldolase (EC 4.1.2.20) compare
H281DRAFT_01538 +0.4 1.3 RNA polymerase sigma-70 factor, ECF subfamily compare
H281DRAFT_04998 +0.4 0.9 type III secretion protein T compare
H281DRAFT_05427 +0.4 2.2 Two-component response regulator, AmiR/NasT family, consists of REC and RNA-binding antiterminator (ANTAR) domains compare
H281DRAFT_03891 +0.4 1.9 Probable cobalt transporter subunit (CbtB) compare
H281DRAFT_04930 +0.4 1.8 Cupin domain compare
H281DRAFT_02614 +0.4 0.8 L-glutamine ABC transporter membrane protein compare
H281DRAFT_05313 +0.4 1.5 Polygalacturonase compare
H281DRAFT_05936 +0.4 1.3 hypothetical protein compare
H281DRAFT_01136 +0.4 1.2 5-(hydroxymethyl)furfural/furfural oxidase compare
H281DRAFT_02444 +0.4 1.6 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED compare
H281DRAFT_01633 +0.4 1.9 hypothetical protein compare
H281DRAFT_02888 +0.4 1.6 hypothetical protein compare
H281DRAFT_06375 +0.4 0.8 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Paraburkholderia bryophila 376MFSha3.1 in carbon source experiments

For carbon source Protocatechuic Acid across organisms