Experiment set6IT026 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Sodium phosphite dibasic pentahydrate 0.25 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3617 -4.9 -3.4 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_5006 -4.7 -8.3 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_2320 -4.0 -2.8 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_3611 -3.9 -2.6 HflC protein compare
Pf6N2E2_3839 -3.4 -5.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_4803 -3.3 -2.3 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_2574 -3.3 -2.2 Flagellar synthesis regulator FleN compare
Pf6N2E2_5573 -3.2 -4.1 Glycerol-3-phosphate regulon repressor, DeoR family compare
Pf6N2E2_4187 -3.2 -3.8 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_5150 -3.2 -6.1 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_5068 -3.2 -12.6 putative Cytochrome bd2, subunit I compare
Pf6N2E2_4584 -3.2 -3.1 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_4369 -3.2 -2.2 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_145 -3.1 -10.9 putative exported protein compare
Pf6N2E2_4159 -3.1 -4.7 Cytochrome c4 compare
Pf6N2E2_4585 -3.1 -12.8 Cell division protein FtsX compare
Pf6N2E2_4204 -3.1 -2.1 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_2278 -3.0 -15.9 Transcription-repair coupling factor compare
Pf6N2E2_2022 -3.0 -7.0 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_144 -3.0 -15.6 Uncharacterized protein YtfM precursor compare
Pf6N2E2_5316 -2.9 -2.8 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_2318 -2.9 -7.9 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_3661 -2.9 -2.8 hypothetical protein compare
Pf6N2E2_3834 -2.8 -7.1 Lipoprotein NlpD compare
Pf6N2E2_3659 -2.8 -5.7 Protein fixF compare
Pf6N2E2_2753 -2.8 -2.6 HtrA protease/chaperone protein compare
Pf6N2E2_5339 -2.7 -6.7 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_4440 -2.7 -7.2 Small-conductance mechanosensitive channel compare
Pf6N2E2_3252 -2.7 -7.6 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_3666 -2.6 -5.0 InaA protein compare
Pf6N2E2_2313 -2.6 -3.9 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_5956 -2.6 -7.6 FIG004453: protein YceG like compare
Pf6N2E2_4305 -2.6 -1.8 FIG00959590: hypothetical protein compare
Pf6N2E2_3612 -2.5 -2.4 HflK protein compare
Pf6N2E2_5671 -2.5 -3.8 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_3658 -2.5 -6.9 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_955 -2.5 -4.0 FIG00953508: hypothetical protein compare
Pf6N2E2_3282 -2.4 -1.7 FIG005080: Possible exported protein compare
Pf6N2E2_1056 -2.4 -1.5 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_5338 -2.4 -8.0 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_2218 -2.4 -4.4 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_2317 -2.4 -4.2 Putative analog of CcoH, COG3198 compare
Pf6N2E2_4146 -2.3 -3.1 Membrane lipoprotein lipid attachment site containing protein USSDB6D compare
Pf6N2E2_2340 -2.3 -5.3 Transcriptional regulator, GntR family compare
Pf6N2E2_3783 -2.2 -4.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_3941 -2.2 -3.3 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_5069 -2.2 -4.1 putative Cytochrome bd2, subunit II compare
Pf6N2E2_2010 -2.2 -2.1 hypothetical protein compare
Pf6N2E2_156 -2.2 -1.8 Carbon storage regulator compare
Pf6N2E2_5720 -2.1 -10.6 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_4057 -2.1 -1.4 lipoprotein, putative compare
Pf6N2E2_3607 -2.1 -7.2 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_2274 -2.1 -4.5 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_3842 -2.1 -4.1 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_2507 -2.1 -5.6 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_3260 -2.1 -4.1 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_3192 -2.0 -2.9 tRNA:Cm32/Um32 methyltransferase compare
Pf6N2E2_3303 -2.0 -4.0 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_3253 -2.0 -5.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_2506 -1.9 -10.8 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_1633 -1.9 -3.5 Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) compare
Pf6N2E2_5242 -1.9 -2.0 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_4096 -1.9 -6.9 Sulfate transporter family protein in cluster with carbonic anhydrase compare
Pf6N2E2_3835 -1.9 -4.1 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_4206 -1.9 -1.8 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_2754 -1.9 -3.7 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf6N2E2_2217 -1.9 -4.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_1625 -1.9 -3.4 Ferric reductase (1.6.99.14) compare
Pf6N2E2_2261 -1.8 -5.7 VacJ-like lipoprotein precursor compare
Pf6N2E2_3062 -1.8 -4.0 Membrane-associated zinc metalloprotease compare
Pf6N2E2_2384 -1.8 -3.7 CmpX compare
Pf6N2E2_2510 -1.8 -4.2 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_1635 -1.8 -4.6 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components compare
Pf6N2E2_2126 -1.8 -5.5 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_3270 -1.8 -3.9 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_3791 -1.7 -8.1 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_1636 -1.7 -7.2 Ferrichrome-iron receptor compare
Pf6N2E2_4418 -1.7 -1.2 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_2864 -1.7 -2.5 Gluconokinase (EC 2.7.1.12) compare
Pf6N2E2_2984 -1.7 -2.5 LysR family transcriptional regulator PA3398 compare
Pf6N2E2_3833 -1.7 -3.7 hypothetical protein compare
Pf6N2E2_1248 -1.7 -2.3 MutT/nudix family protein compare
Pf6N2E2_2310 -1.7 -8.0 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_4454 -1.7 -4.8 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_3257 -1.7 -2.7 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_4607 -1.7 -3.9 Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR compare
Pf6N2E2_2264 -1.7 -3.5 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_4678 -1.6 -1.3 hypothetical protein compare
Pf6N2E2_5103 -1.6 -1.1 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_5520 -1.6 -5.1 Sensory box histidine kinase compare
Pf6N2E2_5086 -1.6 -1.5 hypothetical protein compare
Pf6N2E2_70 -1.6 -3.3 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_4352 -1.6 -2.6 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_2519 -1.6 -1.6 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) compare
Pf6N2E2_5846 -1.6 -8.7 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Pf6N2E2_4416 -1.6 -2.3 Tyrosine recombinase XerC compare
Pf6N2E2_3301 -1.5 -8.4 ABC transporter, ATP-binding protein compare
Pf6N2E2_41 -1.5 -4.1 Two-component system response regulator QseB compare
Pf6N2E2_1634 -1.5 -3.6 ABC-type Fe3+-siderophore transport system, permease component compare
Pf6N2E2_4612 -1.5 -4.4 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_2201 -1.5 -3.7 Transmembrane regulator protein PrtR compare
Pf6N2E2_2869 -1.5 -1.8 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_288 -1.5 -1.9 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_4638 -1.5 -2.2 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_5337 -1.5 -3.6 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_2061 -1.5 -4.2 CobW GTPase involved in cobalt insertion for B12 biosynthesis compare
Pf6N2E2_2513 -1.5 -3.1 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_2253 -1.5 -2.6 hypothetical protein compare
Pf6N2E2_3665 -1.5 -1.0 serine/threonine protein kinase compare
Pf6N2E2_2755 -1.4 -1.6 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_3663 -1.4 -5.6 Glycosyl transferase compare
Pf6N2E2_1396 -1.4 -2.3 ABC transporter, ATP-binding protein compare
Pf6N2E2_3039 -1.4 -4.2 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_3875 -1.4 -1.3 FIG00953324: hypothetical protein compare
Pf6N2E2_5647 -1.4 -3.7 Transcriptional regulator, TetR family compare
Pf6N2E2_423 -1.4 -2.5 Putative phosphatase YfbT compare
Pf6N2E2_1935 -1.4 -2.6 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_338 -1.4 -1.6 Transcriptional regulator, AraC family compare
Pf6N2E2_4954 -1.3 -3.8 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5) compare
Pf6N2E2_4173 -1.3 -3.9 Methionine ABC transporter permease protein compare
Pf6N2E2_3792 -1.3 -4.8 Glucans biosynthesis protein G precursor compare
Pf6N2E2_5049 -1.3 -2.3 acetyltransferase, GNAT family compare
Pf6N2E2_3258 -1.3 -3.2 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_5430 -1.3 -6.4 Transglycosylase, Slt family compare
Pf6N2E2_3240 -1.3 -1.2 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_6140 -1.3 -1.1 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_1238 -1.3 -2.3 hypothetical protein compare
Pf6N2E2_2312 -1.3 -2.3 Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) compare
Pf6N2E2_1404 -1.3 -2.0 Nitrous oxide reductase maturation transmembrane protein NosY compare
Pf6N2E2_5679 -1.3 -3.5 hypothetical protein compare
Pf6N2E2_3461 -1.3 -1.4 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_1981 -1.3 -4.3 FIG051360: Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_2200 -1.3 -1.4 RNA polymerase sigma-54 factor RpoN compare
Pf6N2E2_3610 -1.3 -2.2 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_6100 -1.2 -2.5 tRNA-Val-TAC compare
Pf6N2E2_229 -1.2 -2.9 Putative fumarylacetoacetate (FAA) hydrolase compare
Pf6N2E2_2152 -1.2 -1.4 hypothetical protein compare
Pf6N2E2_4045 -1.2 -2.6 FIG00953248: hypothetical protein compare
Pf6N2E2_3085 -1.2 -2.0 FIG00954614: hypothetical protein compare
Pf6N2E2_3641 -1.2 -2.0 ADP-ribose pyrophosphatase (EC 3.6.1.13) compare
Pf6N2E2_4372 -1.2 -3.7 FIG00460773: hypothetical protein compare
Pf6N2E2_3786 -1.2 -1.9 Twin-arginine translocation protein TatC compare
Pf6N2E2_4921 -1.2 -2.6 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) / GTP cyclohydrolase II (EC 3.5.4.25) compare
Pf6N2E2_3532 -1.2 -4.4 Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) compare
Pf6N2E2_3460 -1.2 -1.3 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_5156 -1.2 -1.8 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_4360 -1.1 -5.3 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf6N2E2_5178 -1.1 -1.8 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_5261 -1.1 -1.0 FIG00956983: hypothetical protein compare
Pf6N2E2_2189 -1.1 -3.5 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_3656 -1.1 -3.3 Probable transcription regulator Mig-14 compare
Pf6N2E2_2496 -1.1 -1.5 FIG00956575: hypothetical protein compare
Pf6N2E2_1305 -1.1 -2.8 Homoprotocatechuate degradative operon repressor compare
Pf6N2E2_623 -1.1 -1.2 FIG00954674: hypothetical protein compare
Pf6N2E2_445 -1.1 -3.0 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_4046 -1.1 -7.7 FIG00953482: hypothetical protein compare
Pf6N2E2_1087 -1.1 -5.2 Iron siderophore sensor protein compare
Pf6N2E2_5219 -1.1 -4.3 FIG140336: TPR domain protein compare
Pf6N2E2_4205 -1.1 -2.4 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_3521 -1.1 -5.7 Sensor histidine kinase/response regulator compare
Pf6N2E2_2258 -1.1 -5.0 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_2285 -1.1 -1.1 FIG00954079: hypothetical protein compare
Pf6N2E2_4661 -1.1 -2.5 KluA regulatory protein compare
Pf6N2E2_3198 -1.1 -1.4 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_178 -1.1 -0.8 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_319 -1.1 -1.2 DUF1850 domain-containing protein compare
Pf6N2E2_5014 -1.1 -1.0 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_5741 -1.0 -3.8 L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) compare
Pf6N2E2_3332 -1.0 -4.1 L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1) compare
Pf6N2E2_649 -1.0 -1.8 General secretion pathway protein L compare
Pf6N2E2_734 -1.0 -2.4 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_3251 -1.0 -4.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_4276 -1.0 -3.0 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_5845 -1.0 -2.8 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Pf6N2E2_1876 -1.0 -1.7 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) compare
Pf6N2E2_4733 -1.0 -1.2 hypothetical protein compare
Pf6N2E2_3243 -1.0 -6.5 FIG067310: hypothetical protein compare
Pf6N2E2_3908 -1.0 -3.7 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_2508 -1.0 -2.2 hypothetical protein compare
Pf6N2E2_4153 -1.0 -0.9 Sensory box histidine kinase compare
Pf6N2E2_5771 -1.0 -3.8 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) compare
Pf6N2E2_3586 -1.0 -3.8 NAD synthetase (EC 6.3.1.5) compare
Pf6N2E2_3942 -1.0 -4.4 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_2822 -1.0 -4.0 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_3571 -1.0 -3.0 Urease accessory protein UreF compare
Pf6N2E2_4317 -1.0 -2.4 FIG00964469: hypothetical protein compare
Pf6N2E2_2904 -1.0 -2.1 Hypothetical protein DUF454 compare
Pf6N2E2_3537 -1.0 -1.7 Cobalt-precorrin-6x reductase (EC 1.3.1.54) compare
Pf6N2E2_4417 -0.9 -2.2 Protein of unknown function DUF484 compare
Pf6N2E2_5740 -0.9 -2.6 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Pf6N2E2_1683 -0.9 -2.3 Fe2+-dicitrate sensor, membrane component compare
Pf6N2E2_5738 -0.9 -4.1 Cobyrinic acid A,C-diamide synthase compare
Pf6N2E2_1199 -0.9 -1.7 hypothetical protein compare
Pf6N2E2_2933 -0.9 -2.5 hypothetical protein compare
Pf6N2E2_2211 -0.9 -4.2 Hydrolase, carbon-nitrogen family compare
Pf6N2E2_2018 -0.9 -1.8 hypothetical protein compare
Pf6N2E2_6057 -0.9 -2.1 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_2219 -0.9 -1.4 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_3940 -0.9 -4.1 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3326 -0.9 -1.2 hypothetical protein compare


Specific Phenotypes

For 6 genes in this experiment

For stress Sodium phosphite dibasic pentahydrate in Pseudomonas fluorescens FW300-N2E2

For stress Sodium phosphite dibasic pentahydrate across organisms