Experiment set6IT026 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

Hydroxy-L-Proline carbon source

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_02404 +3.9 33.7 L-proline dehydrogenase /delta-1-pyrroline-5-carboxylate dehydrogenase compare
H281DRAFT_02007 +3.7 33.2 phosphoenolpyruvate--protein phosphotransferase compare
H281DRAFT_02008 +3.3 18.7 phosphocarrier protein compare
H281DRAFT_02611 +3.2 7.1 transcriptional regulator, RpiR family compare
H281DRAFT_01632 +2.8 24.9 LuxR family transcriptional regulator, quorum-sensing transcription factor LasR compare
H281DRAFT_01927 +2.2 20.3 RNA polymerase, sigma 54 subunit, RpoN/SigL compare
H281DRAFT_06056 +2.0 16.8 histidine kinase (EC 2.7.13.3) compare
H281DRAFT_01633 +1.7 2.3 hypothetical protein compare
H281DRAFT_04004 +1.5 6.5 (p)ppGpp synthetase I, SpoT/RelA compare
H281DRAFT_06276 +1.3 5.5 hypothetical protein compare
H281DRAFT_00254 +1.3 9.6 DNA (cytosine-5)-methyltransferase 1 compare
H281DRAFT_00240 +1.3 9.6 two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family compare
H281DRAFT_00896 +1.3 4.1 ATP-dependent Clp protease proteolytic subunit ClpP compare
H281DRAFT_02405 +1.2 9.8 amino acid/amide ABC transporter substrate-binding protein, HAAT family compare
H281DRAFT_02931 +1.2 7.9 Uncharacterized conserved protein YodC, DUF2158 family compare
H281DRAFT_00236 +1.2 4.8 sigma54 specific transcriptional regulator, Fis family compare
H281DRAFT_03162 +1.2 4.3 transcriptional regulator, XRE family with cupin sensor compare
H281DRAFT_04008 +1.1 3.7 RNAse PH compare
H281DRAFT_00315 +1.0 5.2 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_00750 +1.0 4.2 hypothetical protein compare
H281DRAFT_03130 +1.0 2.0 transcriptional regulator, XRE family with cupin sensor compare
H281DRAFT_04849 +1.0 2.8 UDP-glucose 4-epimerase compare
H281DRAFT_06070 +1.0 3.3 FimV C-terminal domain-containing protein compare
H281DRAFT_04390 +1.0 8.3 ATP-binding cassette, subfamily B compare
H281DRAFT_06277 +1.0 3.9 hypothetical protein compare
H281DRAFT_04404 +1.0 2.8 GreA/GreB family elongation factor compare
H281DRAFT_00316 +1.0 7.0 ADP-heptose:LPS heptosyltransferase compare
H281DRAFT_03723 +1.0 1.0 transcriptional regulator, AraC family with amidase-like domain compare
H281DRAFT_00074 +1.0 3.0 UDP-galactose 4-epimerase compare
H281DRAFT_04552 +1.0 5.1 acetolactate synthase, small subunit compare
H281DRAFT_06562 +0.9 2.3 hypothetical protein compare
H281DRAFT_06094 +0.9 6.9 transcriptional regulator, GntR family compare
H281DRAFT_00447 +0.9 6.5 40-residue YVTN family beta-propeller repeat-containing protein compare
H281DRAFT_04179 +0.9 5.6 two-component system, OmpR family, sensor kinase compare
H281DRAFT_05323 +0.9 1.7 hypothetical protein compare
H281DRAFT_04369 +0.9 3.2 Uncharacterized conserved protein YjbJ, UPF0337 family compare
H281DRAFT_00317 +0.9 4.8 O-antigen ligase compare
H281DRAFT_00819 +0.9 1.7 competence protein ComEA compare
H281DRAFT_03820 +0.9 1.7 methylated-DNA-[protein]-cysteine S-methyltransferase compare
H281DRAFT_01108 +0.9 2.2 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_04300 +0.9 2.3 STE24 endopeptidase compare
H281DRAFT_03822 +0.9 2.7 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_00448 +0.9 6.5 Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily compare
H281DRAFT_02577 +0.9 1.8 Sugar phosphate isomerase/epimerase compare
H281DRAFT_03456 +0.9 1.6 transcriptional regulator, LysR family compare
H281DRAFT_05315 +0.8 2.2 5-dehydro-4-deoxy-D-glucarate aldolase (EC 4.1.2.20) compare
H281DRAFT_06422 +0.8 1.9 hypothetical protein compare
H281DRAFT_06069 +0.8 4.6 tRNA pseudouridine38-40 synthase compare
H281DRAFT_02052 +0.8 1.2 hypothetical protein compare
H281DRAFT_05884 +0.8 4.1 Predicted transcriptional regulator YheO, contains PAS and DNA-binding HTH domains compare
H281DRAFT_01306 +0.8 3.9 dihydroneopterin aldolase compare
H281DRAFT_04998 +0.8 1.9 type III secretion protein T compare
H281DRAFT_02376 +0.8 3.9 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family compare
H281DRAFT_00130 +0.8 2.0 Predicted secreted protein compare
H281DRAFT_02623 +0.8 3.7 aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A compare
H281DRAFT_05476 +0.8 1.7 Short-chain dehydrogenase compare
H281DRAFT_04270 +0.8 4.2 L-glutamate-binding protein /L-aspartate-binding protein compare
H281DRAFT_02910 +0.8 2.1 conserved hypothetical protein compare
H281DRAFT_02378 +0.8 5.6 amino acid/amide ABC transporter membrane protein 1, HAAT family compare
H281DRAFT_01148 +0.8 1.3 DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain compare
H281DRAFT_05619 +0.8 5.7 putative transposase compare
H281DRAFT_02058 +0.8 1.3 cholesterol transport system auxiliary component compare
H281DRAFT_04368 +0.8 6.0 two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family compare
H281DRAFT_01098 +0.8 2.2 hypothetical protein compare
H281DRAFT_03161 +0.8 2.5 MFS transporter, MHS family, proline/betaine transporter compare
H281DRAFT_00409 +0.7 2.4 bacterioferritin compare
H281DRAFT_03297 +0.7 1.6 ADP-ribose pyrophosphatase YjhB, NUDIX family compare
H281DRAFT_05755 +0.7 2.8 flagellar biosynthesis protein FlhG compare
H281DRAFT_04924 +0.7 4.0 iron complex outermembrane recepter protein compare
H281DRAFT_03778 +0.7 3.2 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
H281DRAFT_03796 +0.7 2.7 protein of unknown function (DUF4148) compare
H281DRAFT_00950 +0.7 2.4 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_04391 +0.7 5.5 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_01120 +0.7 2.0 monosaccharide ABC transporter membrane protein, CUT2 family compare
H281DRAFT_06385 +0.7 1.7 hypothetical protein compare
H281DRAFT_06471 +0.7 1.6 sulfonate transport system substrate-binding protein compare
H281DRAFT_04100 +0.7 2.7 Protein of unknown function (DUF2917) compare
H281DRAFT_01837 +0.7 1.5 hypothetical protein compare
H281DRAFT_00147 +0.7 1.3 uncharacterized domain 1-containing protein compare
H281DRAFT_00374 +0.7 2.5 benzoyl-CoA oxygenase, component B compare
H281DRAFT_05512 +0.7 2.1 branched-chain amino acid transport system ATP-binding protein compare
H281DRAFT_04201 +0.7 0.7 O-antigen ligase compare
H281DRAFT_03677 +0.7 1.6 Uncharacterized conserved protein compare
H281DRAFT_03152 +0.7 3.6 hypothetical protein compare
H281DRAFT_05625 +0.7 1.7 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ compare
H281DRAFT_04896 +0.7 1.1 transcriptional regulator, AraC family with amidase-like domain compare
H281DRAFT_05534 +0.7 1.5 Zn-dependent dipeptidase, dipeptidase homolog compare
H281DRAFT_06365 +0.7 1.7 pilus assembly protein CpaC compare
H281DRAFT_01187 +0.7 2.3 short chain enoyl-CoA hydratase (EC 4.2.1.17) compare
H281DRAFT_01289 +0.7 1.2 mxaA protein compare
H281DRAFT_00272 +0.7 2.8 Glyoxalase-like domain-containing protein compare
H281DRAFT_01705 +0.7 2.0 aliphatic nitrilase compare
H281DRAFT_03821 +0.7 2.1 serine/threonine protein kinase compare
H281DRAFT_03418 +0.7 2.1 3-hydroxyisobutyrate dehydrogenase compare
H281DRAFT_00518 +0.7 2.1 Putative negative regulator of RcsB-dependent stress response compare
H281DRAFT_02349 +0.7 2.9 general secretion pathway protein J compare
H281DRAFT_01116 +0.7 1.9 deoxyribose kinase (EC 2.7.1.15) (from data) compare
H281DRAFT_01063 +0.7 3.4 hypothetical protein compare
H281DRAFT_00418 +0.6 1.3 putative spermidine/putrescine transport system substrate-binding protein compare
H281DRAFT_04681 +0.6 4.7 glycolate oxidase iron-sulfur subunit compare
H281DRAFT_05438 +0.6 1.5 transcriptional regulator, IclR family compare
H281DRAFT_01025 +0.6 1.3 transcriptional regulator, MarR family compare
H281DRAFT_02486 +0.6 3.9 oxalate/formate antiporter compare
H281DRAFT_03812 +0.6 2.5 hypothetical protein compare
H281DRAFT_02377 +0.6 5.3 amino acid/amide ABC transporter substrate-binding protein, HAAT family compare
H281DRAFT_01413 +0.6 1.3 hypothetical protein compare
H281DRAFT_06478 +0.6 1.6 succinylornithine aminotransferase apoenzyme compare
H281DRAFT_02231 +0.6 1.5 7-carboxy-7-deazaguanine synthase, Cx14CxxC type compare
H281DRAFT_03764 +0.6 2.3 ribulose-bisphosphate carboxylase large chain compare
H281DRAFT_01943 +0.6 1.7 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) compare
H281DRAFT_00406 +0.6 1.7 Signal transduction histidine kinase compare
H281DRAFT_03498 +0.6 2.9 hypothetical protein compare
H281DRAFT_01111 +0.6 1.5 transcriptional regulator, DeoR family compare
H281DRAFT_01085 +0.6 1.7 Membrane protein TerC, possibly involved in tellurium resistance compare
H281DRAFT_06255 +0.6 4.0 leader peptidase (prepilin peptidase) / N-methyltransferase compare
H281DRAFT_00875 +0.6 2.7 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
H281DRAFT_01244 +0.6 1.8 Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain compare
H281DRAFT_06490 +0.6 1.8 hypothetical protein compare
H281DRAFT_00852 +0.6 2.6 acetyl-CoA acetyltransferase compare
H281DRAFT_05893 +0.6 1.2 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_05003 +0.6 1.7 type III secretion apparatus lipoprotein, YscJ/HrcJ family compare
H281DRAFT_04051 +0.6 1.5 transcriptional regulator, RpiR family compare
H281DRAFT_01267 +0.6 1.1 Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family compare
H281DRAFT_01246 +0.6 1.0 hypothetical protein compare
H281DRAFT_04269 +0.6 4.0 L-glutamate ABC transporter membrane protein /L-aspartate ABC transporter membrane protein compare
H281DRAFT_00851 +0.6 4.7 polyhydroxyalkanoate synthase compare
H281DRAFT_04427 +0.6 1.8 hypothetical protein compare
H281DRAFT_01021 +0.6 1.9 Nitroreductase compare
H281DRAFT_00663 +0.6 1.9 assimilatory nitrite reductase (NAD(P)H) small subunit (EC 1.7.1.4) compare
H281DRAFT_01489 +0.6 2.6 hypothetical protein compare
H281DRAFT_00799 +0.6 4.2 PhoH-like ATPase compare
H281DRAFT_04399 +0.6 2.9 hydroxyacylglutathione hydrolase compare
H281DRAFT_05668 +0.6 1.9 dinuclear metal center protein, YbgI/SA1388 family compare
H281DRAFT_01480 +0.6 1.7 4-hydroxy-tetrahydrodipicolinate synthase compare
H281DRAFT_00379 +0.6 1.1 dihydroorotate oxidase B, catalytic subunit /dihydrouracil dehydrogenase (NAD+) /dihydropyrimidine dehydrogenase (NADP+) compare
H281DRAFT_04802 +0.6 1.6 negative transcriptional regulator, PaiB family compare
H281DRAFT_06177 +0.6 2.8 hypothetical protein compare
H281DRAFT_00575 +0.6 2.4 Uncharacterized conserved protein YtfP, gamma-glutamylcyclotransferase (GGCT)/AIG2-like family compare
H281DRAFT_03461 +0.6 2.3 Predicted membrane protein compare
H281DRAFT_00796 +0.6 2.7 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_02287 +0.6 1.7 PKHD-type hydroxylase compare
H281DRAFT_03844 +0.6 2.0 L-glutamine synthetase (EC 6.3.1.2) compare
H281DRAFT_02592 +0.6 1.0 fumarase, class II compare
H281DRAFT_04467 +0.6 3.4 UDP-glucose pyrophosphorylase compare
H281DRAFT_00378 +0.6 2.0 glutamate synthase (NADPH/NADH) small chain compare
H281DRAFT_05038 +0.6 1.3 MFS transporter, CP family, cyanate transporter compare
H281DRAFT_04671 +0.6 1.5 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
H281DRAFT_01547 +0.6 2.9 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_06237 +0.6 1.8 cell division-specific peptidoglycan biosynthesis regulator FtsW compare
H281DRAFT_02230 +0.6 1.8 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase compare
H281DRAFT_05890 +0.6 0.9 carbohydrate ABC transporter membrane protein 2, CUT1 family compare
H281DRAFT_05071 +0.6 1.2 ammonium transporter compare
H281DRAFT_02350 +0.6 2.9 general secretion pathway protein I compare
H281DRAFT_06120 +0.6 1.2 hypothetical protein compare
H281DRAFT_01854 +0.6 2.3 isoamylase compare
H281DRAFT_01981 +0.6 3.5 transcriptional regulator, MarR family with acetyltransferase activity compare
H281DRAFT_02593 +0.6 1.6 aerobic C4-dicarboxylate transport protein compare
H281DRAFT_00761 +0.6 2.2 molybdenum-pterin binding domain-containing protein compare
H281DRAFT_01921 +0.6 3.6 Kef-type potassium/proton antiporter, CPA2 family compare
H281DRAFT_04039 +0.6 1.3 hypothetical protein compare
H281DRAFT_02532 +0.6 0.8 Sugar phosphate isomerase/epimerase compare
H281DRAFT_03281 +0.6 1.4 Glycosyltransferase compare
H281DRAFT_02232 +0.6 2.9 preQ(0) biosynthesis protein QueC compare
H281DRAFT_01519 +0.6 1.7 fructuronate reductase compare
H281DRAFT_00454 +0.6 2.0 nitrogen metabolism transcriptional regulator, NtrC, Fis family compare
H281DRAFT_01047 +0.6 1.4 GTP cyclohydrolase II compare
H281DRAFT_02908 +0.6 3.0 RNA polymerase, sigma 54 subunit, RpoN/SigL compare
H281DRAFT_04796 +0.6 2.0 Polysaccharide biosynthesis protein compare
H281DRAFT_01825 +0.6 2.6 Outer membrane protein (porin) compare
H281DRAFT_03440 +0.6 1.2 PAP2 superfamily protein compare
H281DRAFT_00377 +0.6 1.4 N-carbamoyl-L-amino-acid hydrolase compare
H281DRAFT_01151 +0.6 2.0 ceramide glucosyltransferase compare
H281DRAFT_04984 +0.6 2.4 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) compare
H281DRAFT_06143 +0.6 1.9 hypothetical protein compare
H281DRAFT_03340 +0.5 2.2 hypothetical protein compare
H281DRAFT_01273 +0.5 3.3 feruloyl esterase compare
H281DRAFT_03728 +0.5 1.5 Uncharacterized conserved protein, DUF1697 family compare
H281DRAFT_02141 +0.5 2.0 hypothetical protein compare
H281DRAFT_05502 +0.5 1.4 transketolase subunit B compare
H281DRAFT_00349 +0.5 2.1 Arabinose efflux permease compare
H281DRAFT_04159 +0.5 1.6 sorbitol-binding protein /mannitol-binding protein compare
H281DRAFT_02741 +0.5 1.4 Enoyl-CoA hydratase/carnithine racemase compare
H281DRAFT_03058 +0.5 1.7 CheY chemotaxis protein or a CheY-like REC (receiver) domain compare
H281DRAFT_05609 +0.5 1.0 penicillin-binding protein 1A compare
H281DRAFT_05972 +0.5 2.5 conserved hypothetical protein compare
H281DRAFT_01010 +0.5 2.7 Protein of unknown function (DUF3788) compare
H281DRAFT_00973 +0.5 2.1 Sugar phosphate permease compare
H281DRAFT_01656 +0.5 1.7 hypothetical protein compare
H281DRAFT_01049 +0.5 1.2 Nucleoside-diphosphate-sugar epimerase compare
H281DRAFT_00870 +0.5 1.5 putative ABC transport system ATP-binding protein compare
H281DRAFT_00067 +0.5 1.5 transposase, IS4 family compare
H281DRAFT_03094 +0.5 1.0 transcriptional regulator, MarR family compare
H281DRAFT_06500 +0.5 1.5 Lactate dehydrogenase compare
H281DRAFT_01184 +0.5 1.2 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_00895 +0.5 2.4 trigger factor compare
H281DRAFT_01262 +0.5 1.1 putative spermidine/putrescine transport system permease protein compare
H281DRAFT_04670 +0.5 1.4 tRNA-guanine transglycosylase compare
H281DRAFT_00523 +0.5 1.3 protease FtsH subunit HflK compare
H281DRAFT_05146 +0.5 1.1 methyltransferase, TIGR00027 family compare
H281DRAFT_03795 +0.5 1.6 hypothetical protein compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source Hydroxy-L-Proline in Paraburkholderia bryophila 376MFSha3.1

For carbon source Hydroxy-L-Proline across organisms