Experiment set6IT025 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Sodium selenate 0.5 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_4071 -3.5 -5.8 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_2574 -3.4 -2.3 Flagellar synthesis regulator FleN compare
Pf6N2E2_3839 -3.2 -5.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_4369 -3.1 -3.0 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_2278 -3.1 -15.9 Transcription-repair coupling factor compare
Pf6N2E2_4584 -3.0 -2.8 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_3782 -3.0 -4.4 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_5342 -2.8 -4.1 21 kDa hemolysin precursor compare
Pf6N2E2_3834 -2.8 -8.2 Lipoprotein NlpD compare
Pf6N2E2_5956 -2.8 -7.6 FIG004453: protein YceG like compare
Pf6N2E2_3252 -2.8 -8.1 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_3941 -2.7 -3.7 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_3282 -2.6 -1.8 FIG005080: Possible exported protein compare
Pf6N2E2_5068 -2.5 -11.0 putative Cytochrome bd2, subunit I compare
Pf6N2E2_3617 -2.5 -5.5 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_3611 -2.5 -2.4 HflC protein compare
Pf6N2E2_2825 -2.5 -4.1 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_5069 -2.5 -6.1 putative Cytochrome bd2, subunit II compare
Pf6N2E2_3842 -2.5 -5.2 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3251 -2.5 -9.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_3841 -2.5 -6.0 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_3783 -2.4 -5.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_2646 -2.3 -2.6 FIG00953416: hypothetical protein compare
Pf6N2E2_3610 -2.3 -4.4 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_3257 -2.3 -2.7 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_4585 -2.3 -12.3 Cell division protein FtsX compare
Pf6N2E2_4205 -2.3 -4.7 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_5771 -2.2 -7.5 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) compare
Pf6N2E2_5150 -2.2 -5.6 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_1056 -2.2 -1.3 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_2755 -2.2 -1.7 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_664 -2.2 -1.8 Acetoin catabolism protein X compare
Pf6N2E2_5245 -2.1 -8.4 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4187 -2.1 -4.9 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_2010 -2.1 -2.4 hypothetical protein compare
Pf6N2E2_3635 -2.1 -4.1 FIG00953138: hypothetical protein compare
Pf6N2E2_5160 -2.1 -2.4 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_3253 -2.0 -6.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_5252 -2.0 -2.6 FIG00956396: hypothetical protein compare
Pf6N2E2_4077 -2.0 -1.8 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_2869 -1.9 -1.7 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_2274 -1.9 -4.9 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_906 -1.9 -3.3 ISPpu14, transposase Orf2 compare
Pf6N2E2_144 -1.9 -13.2 Uncharacterized protein YtfM precursor compare
Pf6N2E2_3908 -1.8 -6.0 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_5178 -1.8 -2.4 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_3835 -1.8 -3.5 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_2473 -1.8 -1.6 Major outer membrane lipoprotein I compare
Pf6N2E2_5242 -1.7 -2.3 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_445 -1.7 -5.2 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_5746 -1.7 -1.7 Cobalamin synthase compare
Pf6N2E2_5555 -1.7 -1.0 Cold shock protein CspA compare
Pf6N2E2_2384 -1.6 -3.2 CmpX compare
Pf6N2E2_145 -1.6 -5.5 putative exported protein compare
Pf6N2E2_4172 -1.5 -3.1 Methionine ABC transporter ATP-binding protein compare
Pf6N2E2_3791 -1.5 -6.8 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_1095 -1.5 -1.5 Opine oxidase subunit C compare
Pf6N2E2_4173 -1.5 -4.8 Methionine ABC transporter permease protein compare
Pf6N2E2_3659 -1.5 -4.8 Protein fixF compare
Pf6N2E2_3258 -1.5 -3.6 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_3940 -1.5 -7.2 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_446 -1.4 -6.4 Glutathione reductase (EC 1.8.1.7) compare
Pf6N2E2_2261 -1.4 -4.6 VacJ-like lipoprotein precursor compare
Pf6N2E2_623 -1.4 -1.4 FIG00954674: hypothetical protein compare
Pf6N2E2_3607 -1.4 -6.2 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_423 -1.4 -1.8 Putative phosphatase YfbT compare
Pf6N2E2_3658 -1.4 -5.4 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_5014 -1.3 -1.2 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_4153 -1.3 -1.2 Sensory box histidine kinase compare
Pf6N2E2_3460 -1.3 -1.4 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_3833 -1.3 -4.7 hypothetical protein compare
Pf6N2E2_4418 -1.3 -1.0 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_5993 -1.3 -2.7 FIG00957412: hypothetical protein compare
Pf6N2E2_4120 -1.3 -8.0 Trk system potassium uptake protein TrkA compare
Pf6N2E2_2313 -1.3 -2.5 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_3792 -1.3 -4.0 Glucans biosynthesis protein G precursor compare
Pf6N2E2_4204 -1.2 -1.6 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_2634 -1.2 -7.0 Potassium uptake protein TrkH compare
Pf6N2E2_5544 -1.2 -5.5 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_5647 -1.2 -4.1 Transcriptional regulator, TetR family compare
Pf6N2E2_5316 -1.2 -1.9 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_2200 -1.2 -1.5 RNA polymerase sigma-54 factor RpoN compare
Pf6N2E2_5841 -1.2 -1.3 GlcG protein compare
Pf6N2E2_4612 -1.2 -4.2 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_2282 -1.2 -2.7 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_2824 -1.2 -6.6 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_2827 -1.2 -1.4 hypothetical protein compare
Pf6N2E2_4599 -1.2 -2.9 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) compare
Pf6N2E2_3260 -1.2 -3.6 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_5103 -1.2 -0.7 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_3661 -1.2 -3.2 hypothetical protein compare
Pf6N2E2_440 -1.2 -1.7 FIG00954920: hypothetical protein compare
Pf6N2E2_919 -1.1 -1.8 FIG00954373: hypothetical protein compare
Pf6N2E2_4451 -1.1 -4.5 FIG139438: lipoprotein B compare
Pf6N2E2_5671 -1.1 -2.5 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_4206 -1.1 -1.5 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_2320 -1.1 -1.5 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_5006 -1.1 -5.2 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_2071 -1.1 -2.5 hypothetical protein compare
Pf6N2E2_2124 -1.0 -1.5 Mg(2+) transport ATPase protein C compare
Pf6N2E2_2823 -1.0 -3.5 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_652 -1.0 -2.8 General secretion pathway protein E compare
Pf6N2E2_613 -1.0 -1.1 lipoprotein, putative compare
Pf6N2E2_4171 -1.0 -2.4 hypothetical protein compare
Pf6N2E2_309 -1.0 -1.6 FIG00957702: hypothetical protein compare
Pf6N2E2_2181 -1.0 -1.1 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_42 -1.0 -3.5 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_946 -1.0 -2.1 Transcriptional regulator, LysR family compare
Pf6N2E2_2318 -1.0 -4.6 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_1009 -1.0 -1.5 Inositol transport system permease protein compare
Pf6N2E2_2126 -1.0 -3.9 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_1136 -1.0 -1.8 Transcriptional regulator, TetR family compare
Pf6N2E2_5646 -1.0 -1.4 PROBABLE MEMBRANE PROTEIN compare
Pf6N2E2_724 -1.0 -1.6 Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family) compare
Pf6N2E2_4826 -1.0 -3.9 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_4624 -1.0 -0.8 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf6N2E2_5806 -1.0 -2.6 hypothetical protein compare
Pf6N2E2_5527 -1.0 -1.3 Cold shock protein CspC compare
Pf6N2E2_2317 -1.0 -2.3 Putative analog of CcoH, COG3198 compare
Pf6N2E2_2311 -1.0 -4.2 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_4706 -1.0 -1.9 Electron transfer flavoprotein, beta subunit compare
Pf6N2E2_4999 -1.0 -3.0 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare
Pf6N2E2_4146 -1.0 -1.7 Membrane lipoprotein lipid attachment site containing protein USSDB6D compare
Pf6N2E2_3303 -0.9 -2.2 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_648 -0.9 -1.4 General secretion pathway protein K compare
Pf6N2E2_2310 -0.9 -5.2 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_375 -0.9 -3.5 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_4263 -0.9 -1.8 Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family compare
Pf6N2E2_647 -0.9 -2.1 General secretion pathway protein G compare
Pf6N2E2_2674 -0.9 -0.9 FIG00953856: hypothetical protein compare
Pf6N2E2_2340 -0.9 -2.5 Transcriptional regulator, GntR family compare
Pf6N2E2_2754 -0.9 -2.6 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf6N2E2_5155 -0.9 -2.0 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_504 -0.9 -2.2 DNA-binding response regulator compare
Pf6N2E2_5331 -0.9 -3.8 ATPase, AFG1 family compare
Pf6N2E2_5339 -0.9 -3.6 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_3039 -0.9 -2.7 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_5780 -0.9 -4.6 Periplasmic protease compare
Pf6N2E2_288 -0.9 -0.9 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_3040 -0.9 -3.5 5-nucleotidase SurE (EC 3.1.3.5) compare
Pf6N2E2_3160 -0.9 -4.1 Multicopper oxidase compare
Pf6N2E2_1207 -0.9 -2.0 Epoxide hydrolase (EC 3.3.2.9) compare
Pf6N2E2_4579 -0.9 -1.2 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_3638 -0.8 -2.3 hypothetical protein compare
Pf6N2E2_2375 -0.8 -1.4 Response regulator NasT compare
Pf6N2E2_4046 -0.8 -6.8 FIG00953482: hypothetical protein compare
Pf6N2E2_5219 -0.8 -3.7 FIG140336: TPR domain protein compare
Pf6N2E2_40 -0.8 -2.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4678 -0.8 -0.9 hypothetical protein compare
Pf6N2E2_1508 -0.8 -1.7 DNA-binding response regulator compare
Pf6N2E2_338 -0.8 -1.3 Transcriptional regulator, AraC family compare
Pf6N2E2_4417 -0.8 -2.3 Protein of unknown function DUF484 compare
Pf6N2E2_3696 -0.8 -1.0 hypothetical protein compare
Pf6N2E2_384 -0.8 -2.1 Glycine cleavage system transcriptional activator compare
Pf6N2E2_5902 -0.8 -1.8 hypothetical protein compare
Pf6N2E2_2201 -0.8 -2.1 Transmembrane regulator protein PrtR compare
Pf6N2E2_1834 -0.8 -1.2 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_3537 -0.8 -2.6 Cobalt-precorrin-6x reductase (EC 1.3.1.54) compare
Pf6N2E2_4047 -0.8 -3.0 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_5172 -0.8 -2.1 FOG: TPR repeat compare
Pf6N2E2_5522 -0.8 -2.5 FIG001943: hypothetical protein YajQ compare
Pf6N2E2_3261 -0.8 -2.3 hypothetical protein compare
Pf6N2E2_75 -0.8 -2.1 Colicin V production protein compare
Pf6N2E2_5243 -0.8 -1.0 hypothetical protein compare
Pf6N2E2_4732 -0.8 -1.6 hypothetical protein compare
Pf6N2E2_4611 -0.8 -2.4 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_3806 -0.8 -2.7 Conserved hypothetical protein (perhaps related to histidine degradation) compare
Pf6N2E2_2714 -0.8 -1.6 transcriptional regulator, Crp/Fnr family compare
Pf6N2E2_3161 -0.8 -2.1 hypothetical protein compare
Pf6N2E2_6164 -0.8 -0.9 tRNA-Val-TAC compare
Pf6N2E2_238 -0.8 -1.3 hypothetical protein compare
Pf6N2E2_3641 -0.8 -2.0 ADP-ribose pyrophosphatase (EC 3.6.1.13) compare
Pf6N2E2_4614 -0.8 -2.1 twitching motility protein PilH compare
Pf6N2E2_1718 -0.8 -1.2 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) compare
Pf6N2E2_563 -0.8 -3.3 Serine transporter compare
Pf6N2E2_2127 -0.8 -2.1 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_3301 -0.8 -5.2 ABC transporter, ATP-binding protein compare
Pf6N2E2_862 -0.8 -2.2 Fumarylacetoacetate hydrolase family protein compare
Pf6N2E2_3844 -0.8 -1.8 hypothetical protein compare
Pf6N2E2_672 -0.8 -1.6 ABC-type polar amino acid transport system, ATPase component compare
Pf6N2E2_1747 -0.7 -2.0 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_49 -0.7 -2.0 FIG00967200: hypothetical protein compare
Pf6N2E2_5487 -0.7 -2.6 Nitrogen regulation protein NR(I) compare
Pf6N2E2_1706 -0.7 -1.9 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf6N2E2_723 -0.7 -1.4 FIG138517: Putative lipid carrier protein compare
Pf6N2E2_5320 -0.7 -4.0 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf6N2E2_3534 -0.7 -1.7 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_5877 -0.7 -1.8 Phosphohistidine phosphatase SixA compare
Pf6N2E2_5761 -0.7 -1.4 Transcriptional regulator, TetR family compare
Pf6N2E2_4601 -0.7 -1.5 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_1043 -0.7 -2.3 Transcriptional regulator, IclR family compare
Pf6N2E2_2211 -0.7 -2.9 Hydrolase, carbon-nitrogen family compare
Pf6N2E2_939 -0.7 -1.8 hypothetical protein compare
Pf6N2E2_896 -0.7 -2.1 Regulatory protein, LysR:LysR, substrate-binding compare
Pf6N2E2_865 -0.7 -0.9 Fumarylacetoacetate hydrolase family protein compare
Pf6N2E2_5430 -0.7 -3.5 Transglycosylase, Slt family compare
Pf6N2E2_502 -0.7 -2.1 hypothetical protein compare
Pf6N2E2_3477 -0.7 -1.3 2-Oxobutyrate oxidase, putative compare
Pf6N2E2_3243 -0.7 -5.2 FIG067310: hypothetical protein compare
Pf6N2E2_4556 -0.7 -1.7 FIG00953078: hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in stress experiments

For stress Sodium selenate across organisms