Experiment set6IT025 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Sodium selenate 0.5 M

200 most detrimental genes:

  gene name fitness t score description  
Pf6N2E2_1776 +1.4 2.3 Chemotaxis protein CheD compare
Pf6N2E2_2967 +1.3 2.7 Cold shock protein CspA compare
Pf6N2E2_5257 +1.3 9.8 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_1596 +1.3 2.5 Periplasmic nitrate reductase component NapD compare
Pf6N2E2_5258 +1.3 9.4 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_1014 +1.3 2.4 Nitrate/nitrite transporter compare
Pf6N2E2_81 +1.3 4.2 hypothetical protein compare
Pf6N2E2_2152 +1.2 1.3 hypothetical protein compare
Pf6N2E2_2390 +1.2 4.1 FIG00959101: hypothetical protein compare
Pf6N2E2_1288 +1.2 2.1 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf6N2E2_1463 +1.2 3.2 Isochorismate pyruvate-lyase (EC 4.-.-.-) compare
Pf6N2E2_2074 +1.1 2.5 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_1040 +1.1 1.4 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_546 +1.0 1.3 FIG00966904: hypothetical protein compare
Pf6N2E2_4531 +1.0 2.1 hypothetical protein compare
Pf6N2E2_4415 +1.0 2.7 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase compare
Pf6N2E2_4392 +1.0 3.1 Translation initiation inhibitor compare
Pf6N2E2_1032 +1.0 1.3 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
Pf6N2E2_4527 +0.9 3.6 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf6N2E2_1147 +0.9 2.5 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf6N2E2_6087 +0.9 1.2 Short-chain dehydrogenase/reductase SDR compare
Pf6N2E2_6070 +0.9 3.1 FIG137877: Hypothetical protein in pyoverdin gene cluster compare
Pf6N2E2_4059 +0.9 1.5 DNA-binding protein HU-alpha compare
Pf6N2E2_868 +0.9 2.6 Transcriptional regulator, HxlR family compare
Pf6N2E2_304 +0.9 3.1 Anthranilate phosphoribosyltransferase like (EC 2.4.2.18) compare
Pf6N2E2_350 +0.8 1.8 Gfa-like protein compare
Pf6N2E2_1354 +0.8 3.2 FIG026291: Hypothetical periplasmic protein compare
Pf6N2E2_2371 +0.8 2.3 Type III secretion outermembrane contact sensing protein (YopN,Yop4b,LcrE) compare
Pf6N2E2_1543 +0.8 2.6 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf6N2E2_693 +0.8 1.8 hypothetical protein compare
Pf6N2E2_460 +0.8 2.7 Glycerate kinase (EC 2.7.1.31) compare
Pf6N2E2_1502 +0.8 1.5 Two-component system regulatory protein compare
Pf6N2E2_3033 +0.8 2.1 hypothetical protein compare
Pf6N2E2_2904 +0.8 3.0 Hypothetical protein DUF454 compare
Pf6N2E2_84 +0.8 1.1 hypothetical protein compare
Pf6N2E2_3737 +0.8 2.5 General secretion pathway protein M compare
Pf6N2E2_4543 +0.7 2.3 hypothetical protein compare
Pf6N2E2_160 +0.7 1.7 hypothetical protein compare
Pf6N2E2_6022 +0.7 2.3 StbE replicon stabilization toxin compare
Pf6N2E2_3264 +0.7 2.7 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_1916 +0.7 1.8 Transcriptional regulator, LysR family compare
Pf6N2E2_1089 +0.7 1.4 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare
Pf6N2E2_5613 +0.7 2.0 FIG00953674: hypothetical protein compare
Pf6N2E2_1445 +0.7 1.7 Glutathione S-transferase compare
Pf6N2E2_5794 +0.7 1.6 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_3134 +0.7 0.9 hypothetical protein compare
Pf6N2E2_5073 +0.7 2.1 Large-conductance mechanosensitive channel compare
Pf6N2E2_5086 +0.7 1.3 hypothetical protein compare
Pf6N2E2_2860 +0.7 3.3 Putative threonine efflux protein compare
Pf6N2E2_1504 +0.7 1.6 putative 2-pyrone-4,6-dicarboxylic acid hydrolase compare
Pf6N2E2_3237 +0.7 2.2 hypothetical protein compare
Pf6N2E2_3106 +0.7 1.8 hypothetical protein compare
Pf6N2E2_2973 +0.7 2.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5664 +0.7 2.9 Arginine pathway regulatory protein ArgR, repressor of arg regulon compare
Pf6N2E2_1441 +0.7 1.5 Uncharacterized oxidoreductase ydgJ (EC 1.-.-.-) compare
Pf6N2E2_689 +0.7 1.1 FIG00956189: hypothetical protein compare
Pf6N2E2_2121 +0.7 1.5 hypothetical protein compare
Pf6N2E2_712 +0.6 2.0 hypothetical protein compare
Pf6N2E2_1885 +0.6 1.3 Transcriptional regulator, AraC family compare
Pf6N2E2_5865 +0.6 4.7 Chaperone protein HtpG compare
Pf6N2E2_1302 +0.6 2.4 TRAP-type C4-dicarboxylate transport system, large permease component compare
Pf6N2E2_1775 +0.6 2.3 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf6N2E2_3085 +0.6 0.7 FIG00954614: hypothetical protein compare
Pf6N2E2_2013 +0.6 0.9 hypothetical protein compare
Pf6N2E2_290 +0.6 2.2 Cold shock protein CspD compare
Pf6N2E2_5898 +0.6 2.5 Integral membrane protein compare
Pf6N2E2_3744 +0.6 1.7 General secretion pathway protein F compare
Pf6N2E2_5709 +0.6 3.2 Protein sprT compare
Pf6N2E2_1246 +0.6 1.1 FIG00961372: hypothetical protein compare
Pf6N2E2_2736 +0.6 2.7 hypothetical protein compare
Pf6N2E2_1501 +0.6 1.0 Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17) compare
Pf6N2E2_1203 +0.6 1.8 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Pf6N2E2_1548 +0.6 1.7 Lactoylglutathione lyase compare
Pf6N2E2_16 +0.6 1.0 hypothetical protein compare
Pf6N2E2_2286 +0.6 1.3 FIG00953287: hypothetical protein compare
Pf6N2E2_4305 +0.6 1.2 FIG00959590: hypothetical protein compare
Pf6N2E2_1876 +0.6 1.4 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) compare
Pf6N2E2_1398 +0.6 2.1 Rhodanese-related sulfurtransferase compare
Pf6N2E2_2267 +0.6 2.1 Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) compare
Pf6N2E2_5262 +0.6 1.8 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf6N2E2_469 +0.6 0.8 lipoprotein, putative compare
Pf6N2E2_3947 +0.6 0.7 Cd(II)/Pb(II)-responsive transcriptional regulator compare
Pf6N2E2_2148 +0.6 2.0 Glutathione S-transferase (EC 2.5.1.18) compare
Pf6N2E2_2072 +0.6 1.8 hypothetical protein compare
Pf6N2E2_956 +0.6 1.7 FIG01210404: hypothetical protein compare
Pf6N2E2_3108 +0.6 1.9 FIG00953405: hypothetical protein compare
Pf6N2E2_766 +0.6 1.9 Fap protein with C39 domain compare
Pf6N2E2_420 +0.6 0.7 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_2246 +0.6 1.8 Arabinose efflux permease compare
Pf6N2E2_5049 +0.5 1.6 acetyltransferase, GNAT family compare
Pf6N2E2_98 +0.5 1.1 putative transmembrane protein compare
Pf6N2E2_1749 +0.5 1.6 Cyn operon transcriptional activator compare
Pf6N2E2_4007 +0.5 1.7 FIG00956018: hypothetical protein compare
Pf6N2E2_2788 +0.5 0.7 Transcriptional regulator, AsnC family compare
Pf6N2E2_833 +0.5 1.9 Probable Co/Zn/Cd efflux system membrane fusion protein compare
Pf6N2E2_4145 +0.5 1.9 ABC-type transport system involved in resistance to organic solvents, periplasmic component USSDB6C compare
Pf6N2E2_1670 +0.5 2.0 conserved membrane protein compare
Pf6N2E2_4025 +0.5 1.2 hypothetical protein compare
Pf6N2E2_5307 +0.5 2.6 FIG006045: Sigma factor, ECF subfamily compare
Pf6N2E2_2756 +0.5 3.1 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_2309 +0.5 1.4 hypothetical protein compare
Pf6N2E2_482 +0.5 1.6 Transcriptional regulator BkdR of isoleucine and valine catabolism operon compare
Pf6N2E2_1699 +0.5 1.1 FIG00955832: hypothetical protein compare
Pf6N2E2_58 +0.5 0.9 tRNA-dihydrouridine synthase C (EC 1.-.-.-) compare
Pf6N2E2_2871 +0.5 1.3 FIG00954271: hypothetical protein compare
Pf6N2E2_1679 +0.5 2.5 SUGAR TRANSPORTER compare
Pf6N2E2_403 +0.5 2.0 Cyanate hydratase (EC 4.2.1.104) compare
Pf6N2E2_2314 +0.5 1.0 VapB protein (antitoxin to VapC) compare
Pf6N2E2_3762 +0.5 2.9 NADP-dependent malic enzyme (EC 1.1.1.40) compare
Pf6N2E2_2306 +0.5 1.7 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_1896 +0.5 1.5 hypothetical protein compare
Pf6N2E2_5536 +0.5 1.0 Holliday junction DNA helicase RuvA compare
Pf6N2E2_663 +0.5 1.4 Transcriptional activator of acetoin dehydrogenase operon AcoR compare
Pf6N2E2_1433 +0.5 1.2 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_5661 +0.5 2.2 L-Arginine ABC transporter, permease protein AotQ (from data) compare
Pf6N2E2_3007 +0.5 2.1 Phage tail length tape-measure protein compare
Pf6N2E2_715 +0.5 1.7 putative membrane protein compare
Pf6N2E2_4680 +0.5 1.3 HTH-type transcriptional regulator BetI compare
Pf6N2E2_5554 +0.5 2.2 FIG023103: Predicted transmembrane protein compare
Pf6N2E2_1587 +0.5 1.9 Dihydroflavonol-4-reductase (EC 1.1.1.219) compare
Pf6N2E2_2351 +0.5 1.8 Oxygen-regulated invasion protein OrgA compare
Pf6N2E2_2480 +0.5 0.8 FIG00957636: hypothetical protein compare
Pf6N2E2_5183 +0.5 3.7 Paraquat-inducible protein B compare
Pf6N2E2_3004 +0.5 1.6 Prophage baseplate assembly protein V compare
Pf6N2E2_1386 +0.5 1.7 amino acid ABC transporter, periplasmic substrate-binding protein compare
Pf6N2E2_822 +0.5 2.1 TPR domain protein compare
Pf6N2E2_2830 +0.5 2.0 Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24) compare
Pf6N2E2_6045 +0.5 0.7 hypothetical protein compare
Pf6N2E2_5181 +0.5 3.7 Paraquat-inducible protein A compare
Pf6N2E2_4162 +0.5 1.4 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_4969 +0.5 0.7 hypothetical protein compare
Pf6N2E2_2002 +0.5 1.6 hypothetical protein compare
Pf6N2E2_425 +0.5 1.5 FIG00957304: hypothetical protein compare
Pf6N2E2_1549 +0.5 1.6 Transcriptional regulator, LysR family compare
Pf6N2E2_2790 +0.5 1.0 Helix-turn-helix motif compare
Pf6N2E2_1715 +0.5 1.1 hypothetical protein compare
Pf6N2E2_5312 +0.5 0.9 FIG00964214: hypothetical protein compare
Pf6N2E2_4080 +0.5 1.8 FIG00953722: hypothetical protein compare
Pf6N2E2_1965 +0.5 2.2 Fructokinase (EC 2.7.1.4) (from data) compare
Pf6N2E2_3575 +0.5 2.7 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_3870 +0.5 1.2 hypothetical protein compare
Pf6N2E2_5863 +0.5 1.6 FIG00956080: hypothetical protein compare
Pf6N2E2_4039 +0.5 2.1 NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) compare
Pf6N2E2_2477 +0.5 0.6 ABC transporter ATP-binding protein YvcR compare
Pf6N2E2_1256 +0.5 1.7 Transcriptional regulator, LysR family compare
Pf6N2E2_5621 +0.5 1.3 DNA-binding response regulator compare
Pf6N2E2_442 +0.5 1.3 FIG00962345: hypothetical protein compare
Pf6N2E2_1082 +0.5 1.0 CopG protein compare
Pf6N2E2_2628 +0.5 2.1 Flagellar basal-body rod protein FlgF compare
Pf6N2E2_1917 +0.5 0.7 hypothetical protein compare
Pf6N2E2_5134 +0.5 1.7 FIG060329: MOSC domain protein compare
Pf6N2E2_2795 +0.5 1.2 putative exported protein compare
Pf6N2E2_6058 +0.5 1.7 FIG139976: hypothetical protein compare
Pf6N2E2_1113 +0.4 0.8 Transcriptional regulator, TetR family compare
Pf6N2E2_5663 +0.4 1.6 L-Arginine ABC transporter, ATPase component (from data) compare
Pf6N2E2_5534 +0.4 1.8 FIG000859: hypothetical protein YebC compare
Pf6N2E2_77 +0.4 1.3 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_5810 +0.4 1.3 Homoserine/homoserine lactone efflux protein compare
Pf6N2E2_4991 +0.4 2.0 DedA protein compare
Pf6N2E2_1035 +0.4 1.9 MotA/TolQ/ExbB proton channel family protein compare
Pf6N2E2_3144 +0.4 3.0 Thiol:disulfide interchange protein DsbC compare
Pf6N2E2_1321 +0.4 1.8 MoaF protein precursor compare
Pf6N2E2_3451 +0.4 2.2 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) compare
Pf6N2E2_48 +0.4 1.1 FIG00955661: hypothetical protein compare
Pf6N2E2_2235 +0.4 1.7 Xanthine permease compare
Pf6N2E2_1283 +0.4 1.0 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_3024 +0.4 1.3 Phage tail fibers compare
Pf6N2E2_3739 +0.4 2.1 General secretion pathway protein K compare
Pf6N2E2_4540 +0.4 1.3 hypothetical protein compare
Pf6N2E2_5736 +0.4 1.9 FIG00961250: hypothetical protein compare
Pf6N2E2_3557 +0.4 1.4 Chaperone-modulator protein CbpM compare
Pf6N2E2_5862 +0.4 0.9 Lipoprotein, putative compare
Pf6N2E2_1006 +0.4 1.4 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) compare
Pf6N2E2_1968 +0.4 1.4 Cobalt-zinc-cadmium resistance protein compare
Pf6N2E2_82 +0.4 0.8 hypothetical protein compare
Pf6N2E2_3505 +0.4 0.6 Translation initiation factor SUI1-related protein compare
Pf6N2E2_1148 +0.4 1.2 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
Pf6N2E2_2247 +0.4 1.2 Transcriptional regulator, AraC family compare
Pf6N2E2_314 +0.4 1.2 Isochorismatase (EC 3.3.2.1) compare
Pf6N2E2_1470 +0.4 1.5 Transcriptional regulator, LysR family compare
Pf6N2E2_1347 +0.4 1.1 Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-) compare
Pf6N2E2_1253 +0.4 1.5 transcriptional regulator compare
Pf6N2E2_5973 +0.4 2.8 GCN5-related N-acetyltransferase (EC 2.3.1.57) compare
Pf6N2E2_4654 +0.4 2.7 hypothetical protein compare
Pf6N2E2_2640 +0.4 0.7 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_3430 +0.4 2.5 Catalase (EC 1.11.1.6) / Peroxidase (EC 1.11.1.7) compare
Pf6N2E2_2675 +0.4 0.5 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_5864 +0.4 1.6 FIG00953296: hypothetical protein compare
Pf6N2E2_6080 +0.4 1.3 Short-chain dehydrogenase, associated with 2-hydroxychromene-2-carboxylate isomerase family protein compare
Pf6N2E2_922 +0.4 1.4 FIG00794167: hypothetical protein compare
Pf6N2E2_6085 +0.4 0.6 Aha1 domain superfamily compare
Pf6N2E2_768 +0.4 1.4 Fap amyloid fibril minor component compare
Pf6N2E2_3730 +0.4 2.1 Excinuclease ATPase subunit compare
Pf6N2E2_1650 +0.4 1.7 Sucrose alpha-glucosidase (EC 3.2.1.48) (from data) compare
Pf6N2E2_168 +0.4 1.6 hypothetical protein compare
Pf6N2E2_5860 +0.4 2.6 Branched-chain amino acid transport system carrier protein compare
Pf6N2E2_5261 +0.4 0.6 FIG00956983: hypothetical protein compare
Pf6N2E2_905 +0.4 1.6 FIG00962753: hypothetical protein compare
Pf6N2E2_1506 +0.4 0.7 Putative alkanesulfonate metabolism utilization regulator compare
Pf6N2E2_2436 +0.4 1.9 DNA-binding response regulator, LuxR family compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in stress experiments

For stress Sodium selenate across organisms