Experiment set6IT025 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs

200 most important genes:

  gene name fitness t score description  
PFLU_RS02790 -5.7 -3.2 TetR family transcriptional regulator compare
PFLU_RS02365 -4.3 -15.4 glycosyltransferase compare
PFLU_RS29545 -4.3 -8.3 hydrogen peroxide-inducible genes activator compare
PFLU_RS26735 -3.6 -13.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS11475 -3.2 -1.8 histidine kinase compare
PFLU_RS24095 -3.1 -2.1 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS24085 -2.9 -2.8 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS05690 -2.6 -1.8 Grx4 family monothiol glutaredoxin compare
PFLU_RS20285 -2.6 -6.9 MerR family transcriptional regulator compare
PFLU_RS28470 -2.4 -6.3 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
PFLU_RS07275 -2.4 -2.3 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS05965 -2.4 -1.8 hypothetical protein compare
PFLU_RS04075 -2.4 -2.4 hypothetical protein compare
PFLU_RS05885 -2.3 -4.4 recombinase RecA compare
PFLU_RS08060 -2.3 -4.7 YciK family oxidoreductase compare
PFLU_RS01315 -2.3 -2.2 Hsp33 family molecular chaperone HslO compare
PFLU_RS07645 -2.3 -3.1 hypothetical protein compare
PFLU_RS15410 -2.3 -2.2 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS22595 -2.3 -3.7 OmpA family protein compare
PFLU_RS04015 -2.3 -3.2 1-phosphofructokinase compare
PFLU_RS04070 -2.2 -4.8 peptide chain release factor 3 compare
PFLU_RS14050 -2.1 -1.8 hypothetical protein compare
PFLU_RS01285 -2.1 -1.4 HAMP domain-containing protein compare
PFLU_RS18625 -2.1 -4.7 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS29905 -2.0 -6.8 Tim44 domain-containing protein compare
PFLU_RS25715 -2.0 -8.9 RNA polymerase-binding protein DksA compare
PFLU_RS28650 -2.0 -5.4 RNA pyrophosphohydrolase compare
PFLU_RS22600 -2.0 -1.3 RNA polymerase sigma factor SigX compare
PFLU_RS23220 -1.9 -2.9 tRNA-Arg compare
PFLU_RS22725 -1.9 -3.1 transcriptional regulator compare
PFLU_RS29550 -1.9 -8.2 ATP-dependent DNA helicase RecG compare
PFLU_RS03610 -1.8 -6.1 redox-regulated ATPase YchF compare
PFLU_RS06310 -1.8 -5.7 sigma E protease regulator RseP compare
PFLU_RS01885 -1.8 -2.1 Sec-independent protein translocase subunit TatB compare
PFLU_RS05020 -1.8 -1.7 DUF1120 domain-containing protein compare
PFLU_RS29480 -1.8 -2.7 exodeoxyribonuclease III compare
PFLU_RS04165 -1.8 -7.2 cell division protein ZapE compare
PFLU_RS19720 -1.8 -1.8 hypothetical protein compare
PFLU_RS18675 -1.7 -2.6 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS24090 -1.7 -4.1 Holliday junction branch migration protein RuvA compare
PFLU_RS13010 -1.7 -4.1 Fe-S biogenesis protein NfuA compare
PFLU_RS29090 -1.7 -7.7 exopolyphosphatase compare
PFLU_RS08160 -1.7 -7.8 sugar transferase compare
PFLU_RS29900 -1.7 -9.5 DNA helicase II compare
PFLU_RS18640 -1.7 -3.3 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS02565 -1.7 -2.9 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS27465 -1.7 -3.0 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
PFLU_RS07685 -1.7 -2.7 transcriptional repressor LexA compare
PFLU_RS25585 -1.6 -1.1 exodeoxyribonuclease V subunit alpha compare
PFLU_RS08350 -1.6 -3.0 ABC transporter ATP-binding protein compare
PFLU_RS27475 -1.6 -5.2 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS10090 -1.6 -1.4 redox-sensitive transcriptional activator SoxR compare
PFLU_RS23240 -1.6 -8.4 magnesium transporter compare
PFLU_RS04195 -1.6 -2.3 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PFLU_RS04205 -1.6 -4.2 cytochrome c1 compare
PFLU_RS08125 -1.6 -2.5 integration host factor subunit beta compare
PFLU_RS05210 -1.5 -2.2 HU family DNA-binding protein compare
PFLU_RS18645 -1.5 -2.2 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS22105 -1.5 -3.6 cysteine synthase CysM compare
PFLU_RS01910 -1.5 -1.6 sterol-binding protein compare
PFLU_RS20515 -1.5 -4.1 amidophosphoribosyltransferase compare
PFLU_RS01660 -1.4 -2.3 rhodanese-like domain-containing protein compare
PFLU_RS08600 -1.4 -2.5 glutaredoxin family protein compare
PFLU_RS09535 -1.4 -1.5 TIGR03750 family conjugal transfer protein compare
PFLU_RS25645 -1.4 -2.2 acetolactate synthase small subunit compare
PFLU_RS00210 -1.4 -1.3 OsmC family protein compare
PFLU_RS00065 -1.4 -7.2 lysophospholipid acyltransferase compare
PFLU_RS08165 -1.4 -1.7 acyl carrier protein compare
PFLU_RS18530 -1.4 -3.7 DNA translocase FtsK compare
PFLU_RS25210 -1.4 -4.8 cytochrome o ubiquinol oxidase subunit III compare
PFLU_RS24205 -1.4 -0.9 DNA binding protein compare
PFLU_RS02700 -1.4 -2.1 ammonia-dependent NAD(+) synthetase compare
PFLU_RS24690 -1.4 -7.7 membrane-bound lytic murein transglycosylase MltF compare
PFLU_RS02670 -1.4 -3.8 hypothetical protein compare
PFLU_RS07665 -1.4 -0.9 type I DNA topoisomerase compare
PFLU_RS28315 -1.4 -1.0 response regulator compare
PFLU_RS18080 -1.4 -2.9 helix-turn-helix transcriptional regulator compare
PFLU_RS24160 -1.4 -4.7 HAMP domain-containing protein compare
PFLU_RS26635 -1.3 -5.3 D-alanyl-D-alanine carboxypeptidase compare
PFLU_RS25920 -1.3 -2.0 outer membrane protein assembly factor BamE compare
PFLU_RS17110 -1.3 -3.1 DUF58 domain-containing protein compare
PFLU_RS21315 -1.3 -6.3 GTP cyclohydrolase I FolE compare
PFLU_RS15610 -1.3 -3.7 helix-turn-helix transcriptional regulator compare
PFLU_RS02775 -1.3 -1.5 urease accessory protein UreF compare
PFLU_RS24980 -1.3 -1.7 purine-binding chemotaxis protein CheW compare
PFLU_RS18665 -1.3 -2.5 NADH-quinone oxidoreductase subunit L compare
PFLU_RS13350 -1.3 -1.3 ParD-like family protein compare
PFLU_RS14440 -1.3 -1.6 hypothetical protein compare
PFLU_RS20290 -1.3 -1.3 integration host factor subunit alpha compare
PFLU_RS14570 -1.3 -5.2 peroxiredoxin compare
PFLU_RS13540 -1.3 -3.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS24900 -1.3 -3.8 tRNA guanosine(34) transglycosylase Tgt compare
PFLU_RS07520 -1.3 -1.2 hypothetical protein compare
PFLU_RS14075 -1.2 -2.3 hypothetical protein compare
PFLU_RS03585 -1.2 -2.0 hypothetical protein compare
PFLU_RS02625 -1.2 -7.9 ribonuclease R compare
PFLU_RS21495 -1.2 -0.8 TlpA family protein disulfide reductase compare
PFLU_RS09575 -1.2 -3.9 FadR family transcriptional regulator compare
PFLU_RS07810 -1.2 -7.9 tRNA dihydrouridine(20/20a) synthase DusA compare
PFLU_RS28320 -1.2 -1.4 glutathione synthase compare
PFLU_RS12385 -1.2 -2.1 methyl-accepting chemotaxis protein compare
PFLU_RS09885 -1.2 -4.5 threonine synthase compare
PFLU_RS30510 -1.2 -3.1 glycosyltransferase family 4 protein compare
PFLU_RS07255 -1.2 -2.9 sulfurtransferase TusA family protein compare
PFLU_RS15310 -1.2 -1.4 YgdI/YgdR family lipoprotein compare
PFLU_RS22335 -1.2 -5.1 cytochrome-c oxidase, cbb3-type subunit III compare
PFLU_RS25205 -1.2 -4.4 cytochrome o ubiquinol oxidase subunit IV compare
PFLU_RS23815 -1.2 -8.3 GGDEF and EAL domain-containing protein compare
PFLU_RS25190 -1.2 -2.5 hypothetical protein compare
PFLU_RS08155 -1.2 -2.9 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS00310 -1.2 -1.3 twin transmembrane helix small protein compare
PFLU_RS00445 -1.2 -1.7 hypothetical protein compare
PFLU_RS02585 -1.2 -4.4 protease modulator HflC compare
PFLU_RS18585 -1.2 -1.0 high frequency lysogenization protein HflD compare
PFLU_RS18595 -1.2 -3.2 cupin domain-containing protein compare
PFLU_RS22375 -1.1 -4.5 cbb3-type cytochrome oxidase assembly protein CcoS compare
PFLU_RS08145 -1.1 -4.7 NAD-dependent epimerase/dehydratase family protein compare
PFLU_RS25225 -1.1 -4.2 disulfide bond formation protein B compare
PFLU_RS07230 -1.1 -5.2 RNA polymerase sigma factor RpoE compare
PFLU_RS18635 -1.1 -2.1 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS17545 -1.1 -1.1 DUF465 domain-containing protein compare
PFLU_RS02580 -1.1 -6.5 FtsH protease activity modulator HflK compare
PFLU_RS20045 -1.1 -2.5 hypothetical protein compare
PFLU_RS21690 -1.1 -2.1 DNA-binding protein compare
PFLU_RS29505 -1.1 -3.4 DNA-directed RNA polymerase subunit omega compare
PFLU_RS25865 -1.1 -2.4 YhbY family RNA-binding protein compare
PFLU_RS28960 -1.1 -4.1 cell division protein ZapA compare
PFLU_RS08575 -1.1 -1.4 hypothetical protein compare
PFLU_RS18620 -1.1 -3.5 NADH-quinone oxidoreductase subunit B compare
PFLU_RS04140 -1.1 -1.4 response regulator transcription factor compare
PFLU_RS30160 -1.1 -1.6 ParB/RepB/Spo0J family partition protein compare
PFLU_RS25595 -1.1 -1.4 exodeoxyribonuclease V subunit gamma compare
PFLU_RS29780 -1.1 -4.2 acyl-CoA thioesterase compare
PFLU_RS30030 -1.1 -0.9 membrane protein compare
PFLU_RS03870 -1.1 -5.4 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
PFLU_RS08105 -1.1 -5.4 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS01965 -1.1 -0.7 ATP-dependent protease subunit HslV compare
PFLU_RS25360 -1.1 -4.0 glutamate 5-kinase compare
PFLU_RS17105 -1.1 -4.3 MoxR family ATPase compare
PFLU_RS15165 -1.1 -1.8 RidA family protein compare
PFLU_RS00935 -1.1 -5.0 EAL domain-containing protein compare
PFLU_RS02555 -1.1 -3.2 AMIN domain-containing protein compare
PFLU_RS25790 -1.1 -3.0 polyribonucleotide nucleotidyltransferase compare
PFLU_RS18735 -1.1 -1.3 hypothetical protein compare
PFLU_RS23070 -1.1 -1.1 50S ribosomal protein L32 compare
PFLU_RS31615 -1.1 -2.4 hypothetical protein compare
PFLU_RS26950 -1.1 -4.6 outer membrane beta-barrel protein compare
PFLU_RS04415 -1.1 -1.9 LPS export ABC transporter periplasmic protein LptC compare
PFLU_RS31490 -1.0 -1.2 hypothetical protein compare
PFLU_RS30520 -1.0 -3.1 ketoacyl-ACP synthase III compare
PFLU_RS25800 -1.0 -3.5 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS30900 -1.0 -1.4 hypothetical protein compare
PFLU_RS22360 -1.0 -6.8 cytochrome c oxidase accessory protein CcoG compare
PFLU_RS29560 -1.0 -1.0 hypothetical protein compare
PFLU_RS18515 -1.0 -1.6 fluoride efflux transporter CrcB compare
PFLU_RS21895 -1.0 -3.2 DMT family transporter compare
PFLU_RS25740 -1.0 -3.3 polynucleotide adenylyltransferase PcnB compare
PFLU_RS24860 -1.0 -1.3 Fe-S cluster assembly transcriptional regulator IscR compare
PFLU_RS07725 -1.0 -2.3 Si-specific NAD(P)(+) transhydrogenase compare
PFLU_RS14430 -1.0 -1.2 arsenate reductase ArsC compare
PFLU_RS18615 -1.0 -1.7 NADH-quinone oxidoreductase subunit A compare
PFLU_RS20345 -1.0 -2.4 hypothetical protein compare
PFLU_RS08135 -1.0 -3.7 glycosyltransferase compare
PFLU_RS05910 -1.0 -1.9 response regulator transcription factor compare
PFLU_RS28645 -1.0 -7.0 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS00410 -1.0 -4.4 cytochrome c4 compare
PFLU_RS24020 -0.9 -2.9 RDD family protein compare
PFLU_RS16840 -0.9 -2.8 DUF2834 domain-containing protein compare
PFLU_RS26565 -0.9 -1.1 rRNA maturation RNase YbeY compare
PFLU_RS18250 -0.9 -2.4 DUF2160 domain-containing protein compare
PFLU_RS23830 -0.9 -5.8 TrkH family potassium uptake protein compare
PFLU_RS31795 -0.9 -2.4 hypothetical protein compare
PFLU_RS28380 -0.9 -3.3 YggT family protein compare
PFLU_RS25875 -0.9 -2.3 transcription elongation factor GreA compare
PFLU_RS12210 -0.9 -1.8 hypothetical protein compare
PFLU_RS22325 -0.9 -3.9 cytochrome-c oxidase, cbb3-type subunit II compare
PFLU_RS05250 -0.9 -2.6 elongation factor 4 compare
PFLU_RS12725 -0.9 -1.2 GNAT family N-acetyltransferase compare
PFLU_RS21995 -0.9 -2.2 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PFLU_RS31425 -0.9 -1.3 hypothetical protein compare
PFLU_RS05780 -0.9 -5.4 helix-turn-helix transcriptional regulator compare
PFLU_RS24560 -0.9 -4.0 site-specific tyrosine recombinase XerD compare
PFLU_RS21645 -0.9 -4.5 chemotaxis protein CheA compare
PFLU_RS17125 -0.9 -4.0 VWA domain-containing protein compare
PFLU_RS13795 -0.9 -2.1 hypothetical protein compare
PFLU_RS17335 -0.9 -3.0 diaminopimelate epimerase compare
PFLU_RS16690 -0.9 -2.4 ABC transporter ATP-binding protein compare
PFLU_RS13365 -0.9 -1.1 hypothetical protein compare
PFLU_RS04200 -0.9 -4.0 cytochrome bc complex cytochrome b subunit compare
PFLU_RS23095 -0.9 -4.0 23S rRNA pseudouridine(955/2504/2580) synthase RluC compare
PFLU_RS01585 -0.9 -3.3 oxidative damage protection protein compare
PFLU_RS31445 -0.9 -1.8 colicin immunity protein compare
PFLU_RS14810 -0.9 -1.2 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
PFLU_RS31675 -0.9 -1.2 hypothetical protein compare
PFLU_RS20790 -0.9 -1.8 heme-binding protein compare
PFLU_RS18225 -0.9 -1.6 helix-turn-helix transcriptional regulator compare
PFLU_RS22740 -0.9 -3.0 phosphoadenylyl-sulfate reductase compare
PFLU_RS03995 -0.9 -0.6 hypothetical protein compare
PFLU_RS26560 -0.9 -3.8 PhoH family protein compare
PFLU_RS23390 -0.8 -0.7 AbrB/MazE/SpoVT family DNA-binding domain-containing protein compare


Specific Phenotypes

For 5 genes in this experiment

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs in Pseudomonas fluorescens SBW25-INTG

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs across organisms