Experiment set6IT025 for Klebsiella michiganensis M5al
Putrescine Dihydrochloride nitrogen source
Group: nitrogen sourceMedia: RCH2_defined_Glucose_noNitrogen + Putrescine Dihydrochloride (20 mM), pH=7
Culturing: Koxy_ML2, 24-well transparent microplate; Multitron, Aerobic, at 30 (C), shaken=700 rpm
By: Adam on 27-Apr-17
Media components: 0.1 g/L Potassium Chloride, 0.6 g/L Sodium phosphate monobasic monohydrate, 20 mM D-Glucose, 30 mM PIPES sesquisodium salt, Wolfe's mineral mix (0.03 g/L Magnesium Sulfate Heptahydrate, 0.015 g/L Nitrilotriacetic acid, 0.01 g/L Sodium Chloride, 0.005 g/L Manganese (II) sulfate monohydrate, 0.001 g/L Cobalt chloride hexahydrate, 0.001 g/L Zinc sulfate heptahydrate, 0.001 g/L Calcium chloride dihydrate, 0.001 g/L Iron (II) sulfate heptahydrate, 0.00025 g/L Nickel (II) chloride hexahydrate, 0.0002 g/L Aluminum potassium sulfate dodecahydrate, 0.0001 g/L Copper (II) sulfate pentahydrate, 0.0001 g/L Boric Acid, 0.0001 g/L Sodium Molybdate Dihydrate, 0.003 mg/L Sodium selenite pentahydrate), Wolfe's vitamin mix (0.1 mg/L Pyridoxine HCl, 0.05 mg/L 4-Aminobenzoic acid, 0.05 mg/L Lipoic acid, 0.05 mg/L Nicotinic Acid, 0.05 mg/L Riboflavin, 0.05 mg/L Thiamine HCl, 0.05 mg/L calcium pantothenate, 0.02 mg/L biotin, 0.02 mg/L Folic Acid, 0.001 mg/L Cyanocobalamin)
Growth plate: 1810 A6
Specific Phenotypes
For 8 genes in this experiment
For nitrogen source Putrescine Dihydrochloride in Klebsiella michiganensis M5al
For nitrogen source Putrescine Dihydrochloride across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Polyamine Metabolism | 1 |
| tRNA processing | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Urea cycle and metabolism of amino groups
- Arginine and proline metabolism
- Geraniol degradation
- Lysine biosynthesis
- Tryptophan metabolism
- 1- and 2-Methylnaphthalene degradation
- Naphthalene and anthracene degradation
- Limonene and pinene degradation
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| putrescine degradation II | 4 | 4 | 4 |
| superpathway of ornithine degradation | 8 | 8 | 5 |
| superpathway of L-arginine, putrescine, and 4-aminobutanoate degradation | 11 | 11 | 6 |
| 4-aminobutanoate degradation I | 2 | 2 | 1 |
| putrescine degradation I | 2 | 2 | 1 |
| putrescine degradation V | 2 | 1 | 1 |
| superpathway of L-arginine and L-ornithine degradation | 13 | 13 | 6 |
| superpathway of 4-aminobutanoate degradation | 3 | 3 | 1 |
| putrescine degradation IV | 3 | 2 | 1 |
| 4-aminobutanoate degradation IV | 3 | 1 | 1 |
| N-methylpyrrolidone degradation | 3 | 1 | 1 |
| GABA shunt I | 4 | 3 | 1 |
| GABA shunt II | 4 | 2 | 1 |
| tRNA processing | 10 | 10 | 1 |