Experiment set6IT025 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

D-Galactose carbon source

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_04391 +1.1 8.9 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_02614 +1.0 2.0 L-glutamine ABC transporter membrane protein compare
H281DRAFT_04390 +0.9 7.7 ATP-binding cassette, subfamily B compare
H281DRAFT_01262 +0.9 2.5 putative spermidine/putrescine transport system permease protein compare
H281DRAFT_04896 +0.8 2.1 transcriptional regulator, AraC family with amidase-like domain compare
H281DRAFT_01095 +0.8 2.9 Glyoxylase, beta-lactamase superfamily II compare
H281DRAFT_01443 +0.8 2.9 RND family efflux transporter, MFP subunit compare
H281DRAFT_03460 +0.8 1.8 Protein of unknown function (DUF2950) compare
H281DRAFT_03381 +0.8 5.6 transcriptional regulator, GntR family compare
H281DRAFT_06494 +0.8 1.4 transcriptional regulator, IclR family compare
H281DRAFT_00819 +0.7 1.6 competence protein ComEA compare
H281DRAFT_03820 +0.7 1.6 methylated-DNA-[protein]-cysteine S-methyltransferase compare
H281DRAFT_01021 +0.7 1.4 Nitroreductase compare
H281DRAFT_01244 +0.7 1.8 Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain compare
H281DRAFT_06220 +0.7 2.7 hypothetical protein compare
H281DRAFT_05012 +0.7 1.2 hypothetical protein compare
H281DRAFT_04425 +0.7 1.9 hypothetical protein compare
H281DRAFT_05445 +0.7 3.0 protein of unknown function (DUF4440) compare
H281DRAFT_01289 +0.7 1.5 mxaA protein compare
H281DRAFT_01417 +0.7 2.0 anti-sigma-28 factor, FlgM family compare
H281DRAFT_01632 +0.7 5.6 LuxR family transcriptional regulator, quorum-sensing transcription factor LasR compare
H281DRAFT_03130 +0.7 1.8 transcriptional regulator, XRE family with cupin sensor compare
H281DRAFT_00690 +0.7 2.5 NADPH:quinone reductase compare
H281DRAFT_02720 +0.7 2.2 GAF domain-containing protein compare
H281DRAFT_01057 +0.7 3.3 monosaccharide ABC transporter ATP-binding protein, CUT2 family (TC 3.A.1.2.-) compare
H281DRAFT_04611 +0.7 1.6 Diadenosine tetraphosphate (Ap4A) hydrolase compare
H281DRAFT_00418 +0.7 1.7 putative spermidine/putrescine transport system substrate-binding protein compare
H281DRAFT_03080 +0.7 3.0 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_01108 +0.7 1.9 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_05759 +0.6 1.7 flagella synthesis protein FlgN compare
H281DRAFT_00861 +0.6 3.5 hypothetical protein compare
H281DRAFT_04781 +0.6 1.4 putative colanic acid biosynthesis acetyltransferase WcaF compare
H281DRAFT_06511 +0.6 1.5 reactive intermediate/imine deaminase compare
H281DRAFT_01775 +0.6 2.4 Putative intracellular protease/amidase compare
H281DRAFT_03796 +0.6 2.3 protein of unknown function (DUF4148) compare
H281DRAFT_00966 +0.6 2.0 uroporphyrinogen-III C-methyltransferase (EC 2.1.1.107) compare
H281DRAFT_04878 +0.6 2.0 transcriptional regulator, ArsR family compare
H281DRAFT_05381 +0.6 1.5 phosphonoacetate hydrolase compare
H281DRAFT_05914 +0.6 1.6 hypothetical protein compare
H281DRAFT_03454 +0.6 2.2 Ribulose-5-phosphate 4-epimerase/Fuculose-1-phosphate aldolase compare
H281DRAFT_03367 +0.6 1.9 electron transfer flavoprotein alpha subunit apoprotein compare
H281DRAFT_00050 +0.6 1.1 Uncharacterized conserved protein, DUF1330 family compare
H281DRAFT_01711 +0.6 2.1 Na/Pi-cotransporter compare
H281DRAFT_03314 +0.6 1.2 hypothetical protein compare
H281DRAFT_05499 +0.6 2.1 putative spermidine/putrescine transport system permease protein compare
H281DRAFT_05776 +0.6 2.7 flagellar biosynthetic protein FliP compare
H281DRAFT_06037 +0.6 1.3 molybdate transport system substrate-binding protein compare
H281DRAFT_02784 +0.6 1.2 Uncharacterized conserved protein YecE, DUF72 family compare
H281DRAFT_04359 +0.6 0.8 Glutaredoxin and related proteins compare
H281DRAFT_01701 +0.6 2.1 hypothetical protein compare
H281DRAFT_01002 +0.6 1.4 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ compare
H281DRAFT_06441 +0.6 2.2 cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein (EC 1.10.3.10) compare
H281DRAFT_05784 +0.6 1.3 flagellar assembly protein FliH compare
H281DRAFT_02702 +0.6 1.3 dihydroxyacetone kinase DhaK subunit compare
H281DRAFT_05998 +0.6 2.3 hypothetical protein compare
H281DRAFT_00406 +0.6 2.3 Signal transduction histidine kinase compare
H281DRAFT_01518 +0.5 2.6 D-mannonate dehydratase (EC 4.2.1.8) compare
H281DRAFT_04871 +0.5 1.9 urocanate hydratase compare
H281DRAFT_00235 +0.5 1.2 hypothetical protein compare
H281DRAFT_00163 +0.5 3.5 glucokinase /transcriptional regulator, RpiR family compare
H281DRAFT_06477 +0.5 2.2 transcriptional regulator, AraC family compare
H281DRAFT_00169 +0.5 2.0 carbohydrate ABC transporter ATP-binding protein, CUT1 family compare
H281DRAFT_05754 +0.5 2.4 flagellar biosynthesis protein FlhF compare
H281DRAFT_05774 +0.5 3.1 flagellar biosynthetic protein FliR compare
H281DRAFT_05678 +0.5 1.6 hypothetical protein compare
H281DRAFT_05157 +0.5 1.4 allantoin racemase compare
H281DRAFT_00698 +0.5 2.0 transcriptional regulator, TetR family compare
H281DRAFT_06338 +0.5 2.0 2-haloacid dehalogenase compare
H281DRAFT_03192 +0.5 1.6 D-methionine transport system substrate-binding protein compare
H281DRAFT_03396 +0.5 1.3 AraC-type DNA-binding protein compare
H281DRAFT_03440 +0.5 1.5 PAP2 superfamily protein compare
H281DRAFT_01058 +0.5 2.1 monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-) compare
H281DRAFT_03392 +0.5 2.7 pyruvate dehydrogenase (quinone) compare
H281DRAFT_00102 +0.5 1.7 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
H281DRAFT_05763 +0.5 2.5 flagellar basal-body rod protein FlgC compare
H281DRAFT_03732 +0.5 1.7 carbohydrate ABC transporter membrane protein 1, CUT1 family compare
H281DRAFT_01131 +0.5 1.2 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_02504 +0.5 2.4 Alkylhydroperoxidase family enzyme, contains CxxC motif compare
H281DRAFT_01367 +0.5 1.9 Protein of unknown function (DUF2891) compare
H281DRAFT_03139 +0.5 2.1 membrane protein compare
H281DRAFT_06474 +0.5 1.4 amino acid ABC transporter membrane protein 1, PAAT family compare
H281DRAFT_00287 +0.5 1.7 benzoate membrane transport protein compare
H281DRAFT_02592 +0.5 2.4 fumarase, class II compare
H281DRAFT_06163 +0.5 1.1 hypothetical protein compare
H281DRAFT_03058 +0.5 1.6 CheY chemotaxis protein or a CheY-like REC (receiver) domain compare
H281DRAFT_04792 +0.5 1.6 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_00716 +0.5 2.6 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_05696 +0.5 3.9 Xaa-Pro aminopeptidase compare
H281DRAFT_01065 +0.5 2.7 NitT/TauT family transport system substrate-binding protein compare
H281DRAFT_01372 +0.5 1.8 protocatechuate 4,5-dioxygenase alpha subunit (EC 1.13.11.8) compare
H281DRAFT_01668 +0.5 1.0 gamma-aminobutyrate:proton symporter, AAT family compare
H281DRAFT_04369 +0.5 1.7 Uncharacterized conserved protein YjbJ, UPF0337 family compare
H281DRAFT_04606 +0.5 0.9 threonine ammonia-lyase, biosynthetic, long form compare
H281DRAFT_05071 +0.5 0.6 ammonium transporter compare
H281DRAFT_05769 +0.5 3.1 flagellar P-ring protein precursor FlgI compare
H281DRAFT_01880 +0.5 1.4 two component transcriptional regulator, LuxR family compare
H281DRAFT_05021 +0.5 0.7 Response regulator compare
H281DRAFT_04470 +0.5 2.0 adenosylhomocysteine nucleosidase compare
H281DRAFT_05770 +0.5 3.0 flagellar protein FlgJ compare
H281DRAFT_05465 +0.5 1.9 hypothetical protein compare
H281DRAFT_05563 +0.5 0.8 Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC compare
H281DRAFT_05902 +0.5 1.3 2-Methylisocitrate lyase, PEP mutase family compare
H281DRAFT_03108 +0.5 1.1 hypothetical protein compare
H281DRAFT_06098 +0.5 2.4 transcriptional regulator, RpiR family compare
H281DRAFT_04997 +0.5 1.0 AraC-type DNA-binding protein compare
H281DRAFT_02460 +0.5 2.3 hypothetical protein compare
H281DRAFT_02985 +0.5 1.3 copper chaperone compare
H281DRAFT_01815 +0.5 2.3 L-amino acid N-acyltransferase YncA compare
H281DRAFT_01222 +0.5 1.0 monosaccharide ABC transporter membrane protein, CUT2 family compare
H281DRAFT_01837 +0.5 1.1 hypothetical protein compare
H281DRAFT_02764 +0.5 2.2 hypothetical protein compare
H281DRAFT_03372 +0.5 1.5 hypothetical protein compare
H281DRAFT_00750 +0.4 1.7 hypothetical protein compare
H281DRAFT_03721 +0.4 1.7 Threonine/homoserine efflux transporter RhtA compare
H281DRAFT_05756 +0.4 1.9 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG compare
H281DRAFT_05761 +0.4 3.2 flagella basal body P-ring formation protein FlgA compare
H281DRAFT_02060 +0.4 2.1 phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein compare
H281DRAFT_03576 +0.4 1.1 two-component system, chemotaxis family, response regulator CheY compare
H281DRAFT_01819 +0.4 2.8 PAS domain S-box-containing protein compare
H281DRAFT_01462 +0.4 0.8 cyclopropane-fatty-acyl-phospholipid synthase compare
H281DRAFT_05396 +0.4 2.6 lipoprotein NlpD compare
H281DRAFT_02692 +0.4 0.7 nudix-type nucleoside diphosphatase, YffH/AdpP family compare
H281DRAFT_00043 +0.4 1.2 protein of unknown function (DUF3331) compare
H281DRAFT_01654 +0.4 0.9 3-phenylpropionate/cinnamic acid dioxygenase, small subunit compare
H281DRAFT_03784 +0.4 2.4 protein phosphatase compare
H281DRAFT_06056 +0.4 3.0 histidine kinase (EC 2.7.13.3) compare
H281DRAFT_00654 +0.4 1.5 putative spermidine/putrescine transport system substrate-binding protein compare
H281DRAFT_02668 +0.4 2.8 Xanthine/uracil permease compare
H281DRAFT_00240 +0.4 3.6 two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family compare
H281DRAFT_03378 +0.4 1.8 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_03124 +0.4 2.8 outer membrane porin, OprD family compare
H281DRAFT_03873 +0.4 1.5 protein of unknown function (DUF4148) compare
H281DRAFT_04855 +0.4 0.9 hypothetical protein compare
H281DRAFT_06308 +0.4 1.2 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) compare
H281DRAFT_05737 +0.4 2.1 flagellar transcriptional activator FlhD compare
H281DRAFT_06237 +0.4 1.5 cell division-specific peptidoglycan biosynthesis regulator FtsW compare
H281DRAFT_04880 +0.4 1.0 PRC-barrel domain-containing protein compare
H281DRAFT_02230 +0.4 1.8 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase compare
H281DRAFT_02831 +0.4 1.8 hypothetical protein compare
H281DRAFT_04406 +0.4 1.7 putative RNA-binding protein, YhbY family compare
H281DRAFT_00049 +0.4 2.3 Putative intracellular protease/amidase compare
H281DRAFT_03572 +0.4 1.6 Crotonobetainyl-CoA:carnitine CoA-transferase CaiB compare
H281DRAFT_01547 +0.4 2.2 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_00660 +0.4 1.1 Glyoxalase superfamily enzyme, possibly 3-demethylubiquinone-9 3-methyltransferase compare
H281DRAFT_05332 +0.4 2.2 Pimeloyl-ACP methyl ester carboxylesterase compare
H281DRAFT_04913 +0.4 2.6 Predicted outer membrane protein compare
H281DRAFT_03442 +0.4 2.6 mannose-6-phosphate isomerase, type 2 compare
H281DRAFT_00010 +0.4 1.0 nitrile hydratase compare
H281DRAFT_03485 +0.4 2.5 osmoprotectant transport system ATP-binding protein compare
H281DRAFT_00877 +0.4 1.8 large conductance mechanosensitive channel compare
H281DRAFT_01505 +0.4 1.6 Nucleoside-diphosphate-sugar epimerase compare
H281DRAFT_00068 +0.4 1.4 Transposase compare
H281DRAFT_00488 +0.4 1.6 exonuclease RecJ compare
H281DRAFT_06026 +0.4 1.7 chromate transporter compare
H281DRAFT_04802 +0.4 2.1 negative transcriptional regulator, PaiB family compare
H281DRAFT_01572 +0.4 1.0 Predicted oxidoreductase compare
H281DRAFT_01007 +0.4 1.6 hypothetical protein compare
H281DRAFT_01616 +0.4 2.1 hypothetical protein compare
H281DRAFT_05935 +0.4 2.6 glutamine--fructose-6-phosphate transaminase compare
H281DRAFT_05486 +0.4 1.8 hypothetical protein compare
H281DRAFT_03341 +0.4 1.7 Predicted arabinose efflux permease, MFS family compare
H281DRAFT_05915 +0.4 1.1 hypothetical protein compare
H281DRAFT_05457 +0.4 2.0 2,3-dihydroxyphenylpropionate 1,2-dioxygenase compare
H281DRAFT_00370 +0.4 1.9 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase (EC 1.2.1.77) compare
H281DRAFT_00002 +0.4 2.6 hypothetical protein compare
H281DRAFT_02939 +0.4 1.3 hypothetical protein compare
H281DRAFT_00995 +0.4 1.4 transcriptional regulator, LysR family compare
H281DRAFT_00836 +0.4 2.3 NitT/TauT family transport system substrate-binding protein compare
H281DRAFT_03640 +0.4 0.9 transcriptional regulator, IclR family compare
H281DRAFT_03881 +0.4 2.3 isoquinoline 1-oxidoreductase, alpha subunit compare
H281DRAFT_06543 +0.4 1.0 cytochrome b561 compare
H281DRAFT_01509 +0.4 0.7 Uncharacterized conserved protein YgbK, DUF1537 family compare
H281DRAFT_02781 +0.4 2.3 Response regulator c-di-GMP phosphodiesterase, RpfG family, contains REC and HD-GYP domains compare
H281DRAFT_04846 +0.4 1.3 Putative flippase GtrA (transmembrane translocase of bactoprenol-linked glucose) compare
H281DRAFT_00254 +0.4 2.3 DNA (cytosine-5)-methyltransferase 1 compare
H281DRAFT_03738 +0.4 1.5 hypothetical protein compare
H281DRAFT_03147 +0.4 1.0 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA compare
H281DRAFT_00248 +0.4 1.2 hypothetical protein compare
H281DRAFT_02150 +0.4 2.3 phosphoheptose isomerase compare
H281DRAFT_05879 +0.4 1.2 DNA-binding transcriptional regulator, MarR family compare
H281DRAFT_01546 +0.4 1.3 putative spermidine/putrescine transport system ATP-binding protein compare
H281DRAFT_02564 +0.4 2.0 amino acid ABC transporter substrate-binding protein, PAAT family compare
H281DRAFT_05537 +0.4 0.7 transcriptional regulator, IclR family compare
H281DRAFT_02971 +0.4 0.9 Protein of unknown function (DUF3225) compare
H281DRAFT_00148 +0.4 1.4 chromosome partitioning protein compare
H281DRAFT_03451 +0.4 1.8 ABC-2 type transport system ATP-binding protein compare
H281DRAFT_01549 +0.4 1.8 MFS transporter, DHA2 family, multidrug resistance protein compare
H281DRAFT_06375 +0.4 0.7 hypothetical protein compare
H281DRAFT_01310 +0.4 1.1 ribulose-5-phosphate 3-epimerase (EC 5.1.3.1) compare
H281DRAFT_03499 +0.4 1.5 2-aminoethylphosphonate transport system substrate-binding protein compare
H281DRAFT_03503 +0.4 1.0 transcriptional regulator, GntR family compare
H281DRAFT_05123 +0.4 1.1 hypothetical protein compare
H281DRAFT_05775 +0.4 1.4 flagellar biosynthetic protein FliQ compare
H281DRAFT_06107 +0.4 1.2 GTPase, G3E family compare
H281DRAFT_00033 +0.4 1.0 IS66 C-terminal element compare
H281DRAFT_03136 +0.4 1.6 Transglutaminase-like enzyme, putative cysteine protease compare
H281DRAFT_05273 +0.4 0.6 Predicted arabinose efflux permease, MFS family compare
H281DRAFT_01981 +0.4 2.0 transcriptional regulator, MarR family with acetyltransferase activity compare
H281DRAFT_03371 +0.4 0.9 outer membrane protein, multidrug efflux system compare
H281DRAFT_05289 +0.4 1.0 N-hydroxyarylamine O-acetyltransferase compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source D-Galactose in Paraburkholderia bryophila 376MFSha3.1

For carbon source D-Galactose across organisms