Experiment set6IT024 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

4-Methyl-2-oxopentanoic acid carbon source

200 most important genes:

  gene name fitness t score description  
H281DRAFT_05621 -7.7 -5.3 glutamate synthase (NADH) small subunit compare
H281DRAFT_00909 -6.7 -4.6 phosphoribosylformylglycinamidine synthase compare
H281DRAFT_05714 -6.4 -4.4 anthranilate synthase, component II compare
H281DRAFT_00120 -6.4 -4.4 sirohydrochlorin cobaltochelatase compare
H281DRAFT_05801 -6.2 -6.0 5,10-methylenetetrahydrofolate reductase (NAD(P)) compare
H281DRAFT_04610 -6.0 -20.7 Fe-S oxidoreductase compare
H281DRAFT_03926 -5.9 -12.6 phosphoserine aminotransferase apoenzyme compare
H281DRAFT_06059 -5.9 -9.6 O-succinylhomoserine sulfhydrylase compare
H281DRAFT_02214 -5.8 -18.0 homoserine O-acetyltransferase compare
H281DRAFT_00117 -5.8 -7.1 sulfate adenylyltransferase subunit 2 compare
H281DRAFT_00115 -5.7 -3.9 Uncharacterized conserved protein, DUF934 family compare
H281DRAFT_06067 -5.4 -14.6 tryptophan synthase, beta chain compare
H281DRAFT_06060 -5.4 -8.4 amidophosphoribosyltransferase compare
H281DRAFT_05620 -5.3 -18.0 glutamate synthase (NADH) large subunit compare
H281DRAFT_02004 -5.3 -5.2 phosphoglycerate mutase compare
H281DRAFT_05713 -5.3 -6.9 anthranilate phosphoribosyltransferase compare
H281DRAFT_04082 -5.2 -3.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
H281DRAFT_06065 -5.0 -8.3 tryptophan synthase, alpha chain compare
H281DRAFT_04553 -5.0 -7.3 ketol-acid reductoisomerase compare
H281DRAFT_06068 -4.9 -5.5 phosphoribosylanthranilate isomerase compare
H281DRAFT_00194 -4.9 -4.7 argininosuccinate lyase compare
H281DRAFT_05712 -4.7 -5.1 indole-3-glycerol phosphate synthase compare
H281DRAFT_05715 -4.7 -16.4 anthranilate synthase, component I compare
H281DRAFT_03925 -4.6 -8.7 chorismate mutase compare
H281DRAFT_06264 -4.6 -3.7 glutamate 5-kinase compare
H281DRAFT_02205 -4.5 -3.1 transcriptional regulator, TraR/DksA family compare
H281DRAFT_04679 -4.4 -4.8 pyrroline-5-carboxylate reductase compare
H281DRAFT_00118 -4.4 -7.2 sulfate adenylyltransferase subunit 1 compare
H281DRAFT_02000 -4.3 -7.4 glycerol-3-phosphate dehydrogenase (NAD(P)+) compare
H281DRAFT_02101 -4.3 -4.9 hydroxymethylglutaryl-CoA lyase compare
H281DRAFT_04119 -4.2 -6.5 ornithine carbamoyltransferase compare
H281DRAFT_00116 -4.0 -2.8 phosphoadenylylsulfate reductase (thioredoxin) compare
H281DRAFT_00395 -4.0 -7.9 hydroxymethylpyrimidine synthase compare
H281DRAFT_04120 -4.0 -5.1 argininosuccinate synthase compare
H281DRAFT_04710 -3.9 -3.8 phosphoribosylformylglycinamidine cyclo-ligase compare
H281DRAFT_00471 -3.9 -8.0 transcriptional regulator, IclR family compare
H281DRAFT_04021 -3.7 -5.0 3,4-dihydroxy-2-butanone 4-phosphate synthase /GTP cyclohydrolase II compare
H281DRAFT_05815 -3.6 -5.8 5,10-methenyltetrahydrofolate synthetase compare
H281DRAFT_01345 -3.5 -7.9 3-methylcrotonyl-CoA carboxylase beta subunit conserved
H281DRAFT_02215 -3.4 -4.1 methionine biosynthesis protein MetW compare
H281DRAFT_00860 -3.4 -2.2 phosphoserine phosphatase compare
H281DRAFT_01798 -3.3 -3.5 Transmembrane transcriptional regulator (anti-sigma factor RsiW) compare
H281DRAFT_01346 -3.3 -5.9 isovaleryl-CoA dehydrogenase conserved
H281DRAFT_00580 -3.3 -9.0 isocitrate lyase compare
H281DRAFT_04974 -3.1 -6.5 aromatic-amino-acid transaminase compare
H281DRAFT_00114 -3.1 -4.5 sulfite reductase (NADPH) beta subunit compare
H281DRAFT_00627 -2.9 -9.2 phosphoenolpyruvate synthase compare
H281DRAFT_05717 -2.9 -6.9 ribulose-5-phosphate 3-epimerase compare
H281DRAFT_01343 -2.8 -3.0 3-methylcrotonoyl-CoA carboxylase, alpha subunit compare
H281DRAFT_01985 -2.8 -9.7 protoheme IX farnesyltransferase compare
H281DRAFT_04172 -2.8 -5.0 transcriptional regulator, TetR family compare
H281DRAFT_04495 -2.6 -7.0 3-oxoacid CoA-transferase subunit A compare
H281DRAFT_04388 -2.5 -2.2 trehalose 6-phosphatase (EC 3.1.3.12) compare
H281DRAFT_00113 -2.4 -4.8 transcriptional regulator, LysR family compare
H281DRAFT_02008 -2.3 -7.5 phosphocarrier protein compare
H281DRAFT_06023 -2.3 -4.9 hypothetical protein compare
H281DRAFT_00290 -2.3 -2.7 Cytochrome c553 compare
H281DRAFT_01200 -2.1 -3.5 short chain enoyl-CoA hydratase (EC 4.2.1.17) compare
H281DRAFT_04707 -2.1 -5.4 HAD-superfamily subfamily IB hydrolase, TIGR01490 compare
H281DRAFT_06273 -2.0 -3.7 AmpD protein compare
H281DRAFT_01203 -1.9 -8.7 acetyl-CoA synthetase compare
H281DRAFT_01199 -1.9 -8.6 Enoyl-CoA hydratase/carnithine racemase compare
H281DRAFT_06315 -1.9 -0.9 glyceraldehyde-3-phosphate dehydrogenase (NAD+) compare
H281DRAFT_00841 -1.7 -2.2 hypothetical protein compare
H281DRAFT_01201 -1.7 -5.3 3-hydroxyisobutyrate dehydrogenase compare
H281DRAFT_05086 -1.6 -3.4 DNA helicase/exodeoxyribonuclease V, beta subunit compare
H281DRAFT_00576 -1.6 -8.7 malate synthase compare
H281DRAFT_02036 -1.6 -5.6 Thiol-disulfide isomerase or thioredoxin compare
H281DRAFT_00444 -1.6 -1.5 N-acetylglutamate synthase compare
H281DRAFT_01935 -1.5 -5.0 Tetratricopeptide repeat-containing protein compare
H281DRAFT_04075 -1.4 -6.3 formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase compare
H281DRAFT_02100 -1.4 -3.8 glyoxylate/hydroxypyruvate reductase A compare
H281DRAFT_04835 -1.4 -2.2 hypothetical protein compare
H281DRAFT_02201 -1.4 -2.1 hypothetical protein compare
H281DRAFT_05705 -1.4 -1.7 hypothetical protein compare
H281DRAFT_01993 -1.4 -7.2 cytochrome c oxidase subunit 1 compare
H281DRAFT_06008 -1.4 -5.5 RNA polymerase, sigma 70 subunit, RpoD compare
H281DRAFT_04635 -1.3 -2.0 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) compare
H281DRAFT_06081 -1.3 -2.1 ubiquitin-hydrolase Zn-finger-containing protein compare
H281DRAFT_05087 -1.2 -2.3 exodeoxyribonuclease V alpha subunit compare
H281DRAFT_00842 -1.2 -5.8 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
H281DRAFT_04623 -1.2 -4.7 transcriptional regulator, TetR family compare
H281DRAFT_05041 -1.2 -1.7 RNA polymerase sigma-70 factor, ECF subfamily compare
H281DRAFT_04263 -1.2 -4.9 putative redox protein compare
H281DRAFT_02411 -1.2 -5.8 aminomethyltransferase compare
H281DRAFT_05601 -1.2 -1.8 hypothetical protein compare
H281DRAFT_04831 -1.2 -2.2 hypothetical protein compare
H281DRAFT_01701 -1.2 -2.9 hypothetical protein compare
H281DRAFT_03775 -1.2 -2.2 protein of unknown function (DUF4399) compare
H281DRAFT_02910 -1.2 -2.2 conserved hypothetical protein compare
H281DRAFT_01205 -1.2 -5.9 transcriptional regulator, AraC family compare
H281DRAFT_03525 -1.1 -3.2 cold-shock DNA-binding protein family compare
H281DRAFT_05855 -1.1 -2.8 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD compare
H281DRAFT_06027 -1.1 -8.0 AMP nucleosidase compare
H281DRAFT_04201 -1.1 -1.9 O-antigen ligase compare
H281DRAFT_01202 -1.1 -3.2 methylmalonate-semialdehyde dehydrogenase [acylating] compare
H281DRAFT_00918 -1.1 -2.9 Conserved secreted protein compare
H281DRAFT_04415 -1.1 -1.4 phosphate uptake regulator, PhoU compare
H281DRAFT_01990 -1.1 -6.8 cytochrome c oxidase subunit 3 compare
H281DRAFT_01986 -1.1 -4.6 cytochrome c oxidase assembly protein subunit 15 compare
H281DRAFT_03585 -1.1 -1.7 Polyisoprenoid-binding protein YceI compare
H281DRAFT_02926 -1.0 -5.9 diguanylate cyclase/phosphodiesterase compare
H281DRAFT_02410 -1.0 -4.3 glycine cleavage system H protein compare
H281DRAFT_04633 -1.0 -4.5 (3S)-malyl-CoA thioesterase compare
H281DRAFT_06031 -1.0 -2.8 transcriptional regulator, MarR family compare
H281DRAFT_06011 -1.0 -1.8 SSU ribosomal protein S21P compare
H281DRAFT_06272 -1.0 -1.2 uncharacterized protein compare
H281DRAFT_00453 -0.9 -2.2 two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL compare
H281DRAFT_02409 -0.9 -7.7 glycine dehydrogenase compare
H281DRAFT_00291 -0.9 -2.2 Cytochrome c553 compare
H281DRAFT_05561 -0.9 -4.0 transcriptional regulator, TetR family compare
H281DRAFT_03909 -0.9 -4.8 Acetoin utilization deacetylase AcuC compare
H281DRAFT_00359 -0.9 -1.9 Acyl-CoA dehydrogenase compare
H281DRAFT_06105 -0.9 -4.1 transcriptional regulator, GntR family compare
H281DRAFT_04452 -0.9 -2.6 amino acid/amide ABC transporter membrane protein 2, HAAT family (TC 3.A.1.4.-) compare
H281DRAFT_05298 -0.9 -1.4 amino acid ABC transporter membrane protein 2, PAAT family compare
H281DRAFT_00072 -0.9 -2.3 hypothetical protein compare
H281DRAFT_06127 -0.9 -2.8 hypothetical protein compare
H281DRAFT_04687 -0.9 -5.8 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase compare
H281DRAFT_01544 -0.9 -2.1 Glycine/D-amino acid oxidase (deaminating) compare
H281DRAFT_00840 -0.9 -3.8 5'-nucleotidase /3'-nucleotidase /exopolyphosphatase compare
H281DRAFT_03240 -0.8 -2.7 pyruvate dehydrogenase (quinone) compare
H281DRAFT_06445 -0.8 -1.2 Molybdopterin synthase catalytic subunit compare
H281DRAFT_01058 -0.8 -1.6 monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-) compare
H281DRAFT_00175 -0.8 -2.2 DNA translocase FtsK compare
H281DRAFT_05185 -0.8 -2.4 hypothetical protein compare
H281DRAFT_00556 -0.8 -2.7 NAD-dependent dihydropyrimidine dehydrogenase, PreA subunit compare
H281DRAFT_05609 -0.8 -1.0 penicillin-binding protein 1A compare
H281DRAFT_03006 -0.8 -2.8 transcriptional regulator, GntR family compare
H281DRAFT_05494 -0.8 -1.2 DNA-binding transcriptional regulator, GntR family compare
H281DRAFT_00851 -0.8 -5.9 polyhydroxyalkanoate synthase compare
H281DRAFT_04230 -0.8 -4.3 glycerol uptake facilitator protein compare
H281DRAFT_04161 -0.8 -3.4 ferric uptake regulator, Fur family compare
H281DRAFT_00712 -0.8 -4.0 RNAse R compare
H281DRAFT_04953 -0.8 -5.5 acetyl-coenzyme A synthetase compare
H281DRAFT_05158 -0.8 -3.1 putative urate catabolism protein compare
H281DRAFT_05964 -0.8 -2.0 D-galactonate transporter compare
H281DRAFT_00454 -0.8 -2.7 nitrogen metabolism transcriptional regulator, NtrC, Fis family compare
H281DRAFT_00799 -0.8 -5.6 PhoH-like ATPase compare
H281DRAFT_05955 -0.8 -1.5 Predicted arabinose efflux permease, MFS family compare
H281DRAFT_01894 -0.8 -0.8 transcriptional regulator, MarR family compare
H281DRAFT_03409 -0.8 -1.3 Protein of unknown function (DUF3072) compare
H281DRAFT_00176 -0.8 -1.1 outer membrane lipoprotein carrier protein compare
H281DRAFT_05469 -0.8 -2.6 transcriptional regulator, IclR family compare
H281DRAFT_00812 -0.8 -2.3 molybdopterin molybdotransferase compare
H281DRAFT_04279 -0.8 -3.5 transcriptional regulator, RpiR family compare
H281DRAFT_05013 -0.7 -2.4 type III secretion protein D compare
H281DRAFT_02530 -0.7 -4.1 transcriptional regulator, IclR family compare
H281DRAFT_05922 -0.7 -2.8 hypothetical protein compare
H281DRAFT_00522 -0.7 -2.2 GTP-binding protein HflX compare
H281DRAFT_00853 -0.7 -1.2 3-oxoacyl-[acyl-carrier-protein] reductase /acetoacetyl-CoA reductase compare
H281DRAFT_01836 -0.7 -1.2 hypothetical protein compare
H281DRAFT_01994 -0.7 -4.0 cytochrome c oxidase subunit 2 compare
H281DRAFT_04515 -0.7 -1.7 RNAse G compare
H281DRAFT_03495 -0.7 -2.2 transcriptional regulator, XRE family compare
H281DRAFT_05550 -0.7 -4.4 DNA-binding transcriptional regulator, GntR family compare
H281DRAFT_01467 -0.7 -1.5 hypothetical protein compare
H281DRAFT_05214 -0.7 -1.9 transcriptional regulator, LacI family compare
H281DRAFT_06220 -0.7 -1.4 hypothetical protein compare
H281DRAFT_03266 -0.7 -1.1 Nicotinamidase-related amidase compare
H281DRAFT_03890 -0.7 -1.3 Broad specificity phosphatase PhoE compare
H281DRAFT_01204 -0.7 -2.1 hypothetical protein compare
H281DRAFT_05302 -0.7 -1.2 FAD/FMN-containing dehydrogenase compare
H281DRAFT_02638 -0.7 -3.1 Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA) compare
H281DRAFT_05963 -0.7 -3.3 transcriptional regulator, IclR family compare
H281DRAFT_03009 -0.7 -1.9 acetyl coenzyme A synthetase (ADP forming), alpha domain-containing protein compare
H281DRAFT_05908 -0.7 -1.8 hypothetical protein compare
H281DRAFT_04719 -0.7 -1.6 TolB protein compare
H281DRAFT_02372 -0.7 -2.0 transcriptional regulator, LysR family compare
H281DRAFT_04883 -0.7 -1.2 L-lysine exporter family protein LysE/ArgO compare
H281DRAFT_01987 -0.7 -4.5 Cytochrome oxidase Cu insertion factor, SCO1/SenC/PrrC family compare
H281DRAFT_01749 -0.7 -1.1 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
H281DRAFT_04627 -0.7 -2.0 Enoyl-CoA hydratase compare
H281DRAFT_05748 -0.7 -3.3 response regulator receiver protein compare
H281DRAFT_01580 -0.7 -1.0 hypothetical protein compare
H281DRAFT_04404 -0.7 -2.0 GreA/GreB family elongation factor compare
H281DRAFT_00852 -0.7 -4.2 acetyl-CoA acetyltransferase compare
H281DRAFT_04694 -0.7 -2.7 heat-inducible transcription repressor HrcA compare
H281DRAFT_01684 -0.7 -2.1 transcriptional regulator, TetR family compare
H281DRAFT_00563 -0.7 -1.0 microcin C transport system ATP-binding protein compare
H281DRAFT_03902 -0.7 -1.7 RNA polymerase, sigma 70 subunit, RpoD compare
H281DRAFT_00201 -0.7 -1.8 hypothetical protein compare
H281DRAFT_06517 -0.7 -1.1 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_06363 -0.7 -2.0 hypothetical protein compare
H281DRAFT_06277 -0.6 -2.8 hypothetical protein compare
H281DRAFT_02386 -0.6 -3.3 16S rRNA m(7)G-527 methyltransferase (EC 2.1.1.170) compare
H281DRAFT_03348 -0.6 -1.9 amino acid ABC transporter ATP-binding protein, PAAT family compare
H281DRAFT_01142 -0.6 -1.4 2,5-furandicarboxylate decarboxylase 2 compare
H281DRAFT_03815 -0.6 -1.1 D-glucarate dehydratase compare
H281DRAFT_04499 -0.6 -5.5 GTP pyrophosphokinase compare
H281DRAFT_03005 -0.6 -1.3 hypothetical protein compare
H281DRAFT_00608 -0.6 -2.9 UTP--GlnB (protein PII) uridylyltransferase, GlnD compare
H281DRAFT_05183 -0.6 -1.9 putrescine transport system permease protein compare
H281DRAFT_01319 -0.6 -1.3 Uncharacterized protein, UPF0264 family compare
H281DRAFT_04399 -0.6 -2.0 hydroxyacylglutathione hydrolase compare
H281DRAFT_04083 -0.6 -2.0 ATP-dependent Clp protease adaptor protein ClpS compare
H281DRAFT_02944 -0.6 -1.6 aldehyde dehydrogenase (NAD+) compare
H281DRAFT_04220 -0.6 -3.4 Cytochrome c, mono- and diheme variants compare
H281DRAFT_04158 -0.6 -2.0 sorbitol ABC transporter membrane protein /mannitol ABC transporter membrane protein compare
H281DRAFT_02864 -0.6 -1.8 precorrin-8X methylmutase compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source 4-Methyl-2-oxovaleric acid in Paraburkholderia bryophila 376MFSha3.1

For carbon source 4-Methyl-2-oxovaleric acid across organisms