Experiment set6IT023 for Paraburkholderia graminis OAS925

Compare to:

Ethanol carbon source

200 most important genes:

  gene name fitness t score description  
ABIE53_002077 -3.6 -2.5 phosphoserine phosphatase compare
ABIE53_003674 -3.4 -6.5 AcrR family transcriptional regulator compare
ABIE53_001140 -3.4 -2.3 dTDP-4-dehydrorhamnose reductase compare
ABIE53_000885 -3.2 -6.5 biopolymer transport protein TolQ compare
ABIE53_003579 -3.2 -9.8 AmpD protein compare
ABIE53_004630 -3.2 -1.4 hypothetical protein compare
ABIE53_000884 -3.1 -3.7 biopolymer transport protein TolR compare
ABIE53_005863 -3.1 -12.8 cyclic di-GMP phosphodiesterase Gmr compare
ABIE53_000423 -3.1 -3.6 DnaK suppressor protein compare
ABIE53_003434 -2.8 -10.5 heptosyltransferase-2 compare
ABIE53_002138 -2.8 -8.1 glucose-6-phosphate isomerase compare
ABIE53_000805 -2.8 -3.7 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
ABIE53_000830 -2.7 -3.9 preprotein translocase subunit YajC compare
ABIE53_003494 -2.6 -3.5 Holliday junction DNA helicase RuvA compare
ABIE53_003160 -2.6 -11.5 hypothetical protein compare
ABIE53_006508 -2.5 -4.1 GntR family transcriptional repressor for pyruvate dehydrogenase complex compare
ABIE53_005772 -2.5 -2.3 putative PurR-regulated permease PerM compare
ABIE53_000883 -2.4 -1.5 colicin import membrane protein compare
ABIE53_002746 -2.3 -9.6 modulator of FtsH protease compare
ABIE53_000262 -2.3 -2.7 chromosome partitioning protein compare
ABIE53_000598 -2.3 -7.5 thiol:disulfide interchange protein DsbA compare
ABIE53_000795 -2.3 -8.4 MurNAc alpha-1-phosphate uridylyltransferase compare
ABIE53_000855 -2.3 -13.8 glutamine synthetase adenylyltransferase compare
ABIE53_002739 -2.2 -4.6 outer membrane protein assembly factor BamB compare
ABIE53_000800 -2.2 -5.3 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase compare
ABIE53_006450 -2.1 -3.9 type VI secretion system protein ImpM compare
ABIE53_003988 -2.1 -2.9 small multidrug resistance pump compare
ABIE53_001416 -2.1 -8.3 transaldolase compare
ABIE53_003517 -2.0 -6.1 phosphogluconate dehydratase compare
ABIE53_000854 -2.0 -12.0 hypothetical protein compare
ABIE53_002570 -2.0 -2.3 FixJ family two-component response regulator compare
ABIE53_005166 -2.0 -3.4 DNA-binding GntR family transcriptional regulator compare
ABIE53_005596 -2.0 -6.9 DNA-binding IclR family transcriptional regulator compare
ABIE53_005307 -2.0 -2.5 catechol 2,3-dioxygenase-like lactoylglutathione lyase family enzyme compare
ABIE53_002101 -1.9 -8.0 two-component system phosphate regulon response regulator OmpR compare
ABIE53_000614 -1.9 -3.6 rubrerythrin compare
ABIE53_003689 -1.9 -9.1 sec-independent protein translocase protein TatB compare
ABIE53_003638 -1.9 -4.0 ribulose-phosphate 3-epimerase compare
ABIE53_004259 -1.9 -1.7 hypothetical protein compare
ABIE53_000683 -1.9 -9.5 protoheme IX farnesyltransferase compare
ABIE53_003737 -1.9 -13.1 outer membrane protein compare
ABIE53_003186 -1.9 -8.8 disulfide bond formation protein DsbB compare
ABIE53_003162 -1.8 -3.0 OOP family OmpA-OmpF porin compare
ABIE53_002762 -1.8 -4.6 enolase compare
ABIE53_000649 -1.8 -3.7 peroxiredoxin compare
ABIE53_003231 -1.8 -1.1 DNA-directed RNA polymerase subunit omega compare
ABIE53_003305 -1.8 -8.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABIE53_003688 -1.8 -13.2 sec-independent protein translocase protein TatC compare
ABIE53_000465 -1.8 -11.8 cation diffusion facilitator family transporter compare
ABIE53_003749 -1.7 -5.8 diaminopimelate decarboxylase compare
ABIE53_000745 -1.7 -1.6 two-component system capsular synthesis response regulator RcsB compare
ABIE53_003306 -1.7 -8.2 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABIE53_003258 -1.7 -8.5 YggT family protein compare
ABIE53_001500 -1.7 -2.8 enoyl-CoA hydratase/carnithine racemase compare
ABIE53_002004 -1.7 -7.7 anti-sigma factor RsiW compare
ABIE53_001858 -1.6 -2.4 uncharacterized protein YqgQ compare
ABIE53_003512 -1.6 -3.7 DNA-binding transcriptional LysR family regulator compare
ABIE53_002794 -1.6 -4.5 PAS domain S-box-containing protein compare
ABIE53_002424 -1.6 -7.3 anti-sigma factor RsiW compare
ABIE53_000061 -1.6 -5.3 methylenetetrahydrofolate reductase (NADPH) compare
ABIE53_004252 -1.6 -2.5 putative pyridoxine 5'-phosphate oxidase superfamily flavin-nucleotide-binding protein compare
ABIE53_003040 -1.6 -8.8 serine protease Do compare
ABIE53_002735 -1.6 -7.5 membrane protease subunit HflK compare
ABIE53_005142 -1.6 -1.2 acyl-CoA reductase-like NAD-dependent aldehyde dehydrogenase compare
ABIE53_006484 -1.5 -2.3 hypothetical protein compare
ABIE53_002546 -1.5 -2.0 cell wall-associated NlpC family hydrolase compare
ABIE53_000650 -1.5 -8.3 thiol-disulfide isomerase/thioredoxin compare
ABIE53_000153 -1.5 -11.3 O-antigen ligase compare
ABIE53_001163 -1.5 -6.1 FlaA1/EpsC-like NDP-sugar epimerase compare
ABIE53_005841 -1.5 -1.6 2-furoyl-CoA dehydrogenase FAD binding subunit compare
ABIE53_003536 -1.5 -7.4 glyceraldehyde 3-phosphate dehydrogenase compare
ABIE53_004851 -1.5 -7.0 uncharacterized protein (TIGR00730 family) compare
ABIE53_001143 -1.5 -10.6 GT2 family glycosyltransferase compare
ABIE53_000674 -1.5 -6.9 cytochrome c oxidase subunit 1 compare
ABIE53_002352 -1.5 -7.7 AcrR family transcriptional regulator compare
ABIE53_005753 -1.5 -2.0 hypothetical protein compare
ABIE53_003428 -1.5 -3.8 phosphoglycerate kinase compare
ABIE53_000798 -1.5 -5.5 peptidyl-prolyl cis-trans isomerase SurA compare
ABIE53_001760 -1.5 -2.6 DNA-binding transcriptional LysR family regulator compare
ABIE53_006257 -1.4 -1.9 hypothetical protein compare
ABIE53_006476 -1.4 -1.5 hypothetical protein compare
ABIE53_002116 -1.4 -3.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABIE53_003146 -1.4 -5.3 ADP-L-glycero-D-manno-heptose 6-epimerase compare
ABIE53_001162 -1.4 -6.7 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase compare
ABIE53_000768 -1.4 -9.6 FAD/FMN-containing dehydrogenase/Fe-S oxidoreductase compare
ABIE53_005021 -1.4 -2.2 putative cupin superfamily protein compare
ABIE53_002396 -1.4 -6.2 muramoyltetrapeptide carboxypeptidase compare
ABIE53_006282 -1.4 -2.0 DNA-binding HxlR family transcriptional regulator compare
ABIE53_001141 -1.4 -7.6 GT2 family glycosyltransferase compare
ABIE53_001148 -1.4 -8.2 glycosyltransferase involved in cell wall biosynthesis compare
ABIE53_003733 -1.4 -3.8 glutamate synthase domain-containing protein 3 compare
ABIE53_002580 -1.3 -3.1 transcriptional regulator GlxA family with amidase domain compare
ABIE53_005339 -1.3 -4.5 TPR repeat protein compare
ABIE53_003013 -1.3 -5.1 hypothetical protein compare
ABIE53_000667 -1.3 -6.6 glycerol-3-phosphate dehydrogenase (NAD(P)+) compare
ABIE53_000394 -1.3 -8.2 nitrogen fixation/metabolism regulation signal transduction histidine kinase compare
ABIE53_006380 -1.3 -1.8 hypothetical protein compare
ABIE53_004811 -1.3 -5.8 tryptophan synthase alpha chain compare
ABIE53_003410 -1.3 -5.9 TetR/AcrR family acrAB operon transcriptional repressor compare
ABIE53_004325 -1.3 -3.0 hypothetical protein compare
ABIE53_004847 -1.3 -10.6 AMP nucleosidase compare
ABIE53_003535 -1.3 -8.8 GntR family transcriptional repressor for pyruvate dehydrogenase complex compare
ABIE53_001664 -1.3 -10.0 acetyl-CoA synthetase compare
ABIE53_002650 -1.3 -2.3 hypothetical protein compare
ABIE53_001160 -1.3 -6.1 GT2 family glycosyltransferase compare
ABIE53_001142 -1.3 -4.3 hypothetical protein compare
ABIE53_003687 -1.3 -9.4 serine protease DegQ compare
ABIE53_006172 -1.3 -3.6 AhpD family alkylhydroperoxidase compare
ABIE53_006084 -1.3 -4.3 peptidoglycan/xylan/chitin deacetylase (PgdA/CDA1 family) compare
ABIE53_001149 -1.3 -4.2 acetyltransferase-like isoleucine patch superfamily enzyme compare
ABIE53_001150 -1.3 -4.2 glycosyltransferase involved in cell wall biosynthesis compare
ABIE53_006280 -1.2 -4.6 glycosyltransferase involved in cell wall biosynthesis compare
ABIE53_006353 -1.2 -1.8 sugar phosphate isomerase/epimerase compare
ABIE53_000682 -1.2 -7.4 cytochrome c oxidase assembly protein subunit 15 compare
ABIE53_000678 -1.2 -5.5 cytochrome c oxidase subunit 3 compare
ABIE53_002427 -1.2 -5.6 host factor-I protein compare
ABIE53_004384 -1.2 -2.0 pyrroloquinoline quinone biosynthesis protein D compare
ABIE53_000831 -1.2 -6.1 queuine tRNA-ribosyltransferase compare
ABIE53_004408 -1.2 -1.4 hypothetical protein compare
ABIE53_002862 -1.2 -5.6 outer membrane protein assembly factor BamC compare
ABIE53_003936 -1.2 -1.1 type VI secretion system protein ImpF compare
ABIE53_001383 -1.2 -3.5 DNA (cytosine-5)-methyltransferase 1 compare
ABIE53_003588 -1.2 -4.2 glutamate 5-kinase compare
ABIE53_000403 -1.2 -1.4 rod shape-determining protein MreD compare
ABIE53_005792 -1.2 -1.5 putative lipoprotein YmbA compare
ABIE53_001286 -1.2 -4.3 S-DNA-T family DNA segregation ATPase FtsK/SpoIIIE compare
ABIE53_003142 -1.2 -7.9 acetoin utilization deacetylase AcuC-like enzyme compare
ABIE53_000367 -1.2 -2.4 NAD-dependent SIR2 family protein deacetylase compare
ABIE53_003711 -1.2 -7.6 phospholipid/cholesterol/gamma-HCH transport system permease protein compare
ABIE53_003752 -1.2 -1.0 cytochrome c-type biogenesis protein CcsB compare
ABIE53_002366 -1.1 -2.4 methyl-accepting chemotaxis protein compare
ABIE53_002496 -1.1 -6.3 regulator of sigma E protease compare
ABIE53_003043 -1.1 -8.2 RNA polymerase sigma-70 factor (ECF subfamily) compare
ABIE53_005214 -1.1 -2.0 polyisoprenoid-binding protein YceI compare
ABIE53_006077 -1.1 -5.6 L-fuconolactonase compare
ABIE53_000880 -1.1 -5.2 tol-pal system protein YbgF compare
ABIE53_001538 -1.1 -5.5 ribonuclease G compare
ABIE53_006420 -1.1 -1.3 hyperosmotically inducible protein compare
ABIE53_003717 -1.1 -8.7 putative ATP-binding cassette transporter compare
ABIE53_000063 -1.1 -2.5 adenosylhomocysteinase compare
ABIE53_006109 -1.1 -3.0 DNA-binding transcriptional LysR family regulator compare
ABIE53_002041 -1.1 -5.4 Mlc titration factor MtfA (ptsG expression regulator) compare
ABIE53_000335 -1.1 -5.4 putative membrane protein insertion efficiency factor compare
ABIE53_001382 -1.1 -3.1 pimeloyl-ACP methyl ester carboxylesterase compare
ABIE53_000772 -1.1 -6.2 putative lipid-binding transport protein (Tim44 family) compare
ABIE53_003445 -1.0 -4.1 succinyl-CoA synthetase beta subunit compare
ABIE53_002318 -1.0 -7.6 serine protein kinase compare
ABIE53_000306 -1.0 -1.2 general secretion pathway protein M compare
ABIE53_003684 -1.0 -9.1 ubiquinol-cytochrome c reductase cytochrome b subunit compare
ABIE53_005562 -1.0 -2.3 CDP-diacylglycerol pyrophosphatase compare
ABIE53_002194 -1.0 -3.5 hypothetical protein compare
ABIE53_001135 -1.0 -1.9 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
ABIE53_002436 -1.0 -2.4 tight adherence protein C compare
ABIE53_002368 -1.0 -5.1 putrescine transport system permease protein compare
ABIE53_002259 -1.0 -4.2 DeoR family deoxyribose operon repressor compare
ABIE53_004482 -1.0 -1.4 TetR/AcrR family transcriptional repressor of nem operon compare
ABIE53_001976 -1.0 -1.9 hypothetical protein compare
ABIE53_002574 -1.0 -2.1 enoyl-CoA hydratase/carnithine racemase compare
ABIE53_001188 -1.0 -4.9 PST family polysaccharide transporter compare
ABIE53_002134 -1.0 -5.8 peptidyl-prolyl cis-trans isomerase D compare
ABIE53_002528 -1.0 -1.9 LPLT family lysophospholipid transporter-like MFS transporter compare
ABIE53_002113 -1.0 -3.9 hypothetical protein compare
ABIE53_002316 -1.0 -7.8 stage V sporulation protein R compare
ABIE53_000663 -1.0 -7.8 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
ABIE53_005079 -1.0 -1.6 DNA-binding transcriptional LysR family regulator compare
ABIE53_003063 -1.0 -5.5 ABC-type transport system involved in cytochrome bd biosynthesis fused ATPase/permease subunit compare
ABIE53_002752 -1.0 -3.8 Zn-dependent protease compare
ABIE53_005198 -1.0 -2.0 rhodanese-related sulfurtransferase compare
ABIE53_002233 -1.0 -1.3 LysR family transcriptional activator of nhaA compare
ABIE53_001061 -1.0 -2.2 FixJ family two-component response regulator compare
ABIE53_003685 -1.0 -6.6 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABIE53_002811 -1.0 -6.4 YVTN family beta-propeller protein compare
ABIE53_001421 -1.0 -1.0 cytochrome c553 compare
ABIE53_004803 -1.0 -4.2 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit compare
ABIE53_004227 -0.9 -4.1 signal transduction histidine kinase compare
ABIE53_004110 -0.9 -2.4 hypothetical protein compare
ABIE53_002064 -0.9 -7.4 polyhydroxyalkanoate synthase compare
ABIE53_003734 -0.9 -6.1 glutamate synthase (NADPH/NADH) large chain compare
ABIE53_003754 -0.9 -6.2 cbb3-type cytochrome c oxidase subunit III compare
ABIE53_005905 -0.9 -1.7 alkyl hydroperoxide reductase subunit F compare
ABIE53_004186 -0.9 -2.6 cytidine deaminase compare
ABIE53_002684 -0.9 -3.1 TetR/AcrR family transcriptional repressor of nem operon compare
ABIE53_004399 -0.9 -2.1 hyperosmotically inducible protein compare
ABIE53_005551 -0.9 -2.3 DNA-binding transcriptional LysR family regulator compare
ABIE53_002367 -0.9 -3.5 putrescine transport system permease protein compare
ABIE53_000840 -0.9 -3.9 pyrroline-5-carboxylate reductase compare
ABIE53_003017 -0.9 -4.2 trehalose 6-phosphate phosphatase compare
ABIE53_005017 -0.9 -2.6 arabinogalactan endo-1,4-beta-galactosidase compare
ABIE53_001906 -0.9 -2.6 MFS family permease compare
ABIE53_005411 -0.9 -5.3 type I restriction enzyme S subunit compare
ABIE53_000470 -0.9 -6.5 16S rRNA (cytidine1402-2'-O)-methyltransferase compare
ABIE53_003683 -0.9 -7.3 ubiquinol-cytochrome c reductase cytochrome c1 subunit compare
ABIE53_004896 -0.9 -2.5 hypothetical protein compare
ABIE53_004181 -0.9 -1.3 sarcosine oxidase subunit beta compare
ABIE53_002067 -0.9 -5.3 polyhydroxyalkanoate synthesis repressor PhaR compare
ABIE53_002105 -0.9 -1.7 hypothetical protein compare
ABIE53_003712 -0.9 -6.0 phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein compare
ABIE53_002317 -0.9 -6.1 uncharacterized sporulation protein YeaH/YhbH (DUF444 family) compare
ABIE53_003361 -0.9 -3.9 integrase/recombinase XerD compare
ABIE53_003228 -0.9 -6.4 transcription elongation factor GreB compare


Specific Phenotypes

None in this experiment

For Paraburkholderia graminis OAS925 in carbon source experiments

For carbon source Ethanol across organisms