Experiment set6IT023 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

2-furoic acid carbon source

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_04391 +1.3 10.2 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_04390 +1.2 8.5 ATP-binding cassette, subfamily B compare
H281DRAFT_02007 +1.1 9.8 phosphoenolpyruvate--protein phosphotransferase compare
H281DRAFT_05281 +1.1 2.3 triphosphoribosyl-dephospho-CoA synthase compare
H281DRAFT_03440 +1.0 2.8 PAP2 superfamily protein compare
H281DRAFT_06297 +0.9 2.0 L-arabinose-binding protein compare
H281DRAFT_03356 +0.9 2.5 glycerate dehydrogenase compare
H281DRAFT_00885 +0.9 5.4 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ compare
H281DRAFT_06056 +0.9 6.5 histidine kinase (EC 2.7.13.3) compare
H281DRAFT_03023 +0.9 1.9 Protein of unknown function (DUF2866) compare
H281DRAFT_01021 +0.9 2.7 Nitroreductase compare
H281DRAFT_05893 +0.8 2.0 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_01443 +0.8 3.0 RND family efflux transporter, MFP subunit compare
H281DRAFT_03684 +0.8 3.0 Protein N-acetyltransferase, RimJ/RimL family compare
H281DRAFT_02008 +0.8 4.1 phosphocarrier protein compare
H281DRAFT_01766 +0.8 2.0 cytochrome c oxidase subunit 2 compare
H281DRAFT_04051 +0.8 2.8 transcriptional regulator, RpiR family compare
H281DRAFT_01632 +0.8 6.3 LuxR family transcriptional regulator, quorum-sensing transcription factor LasR compare
H281DRAFT_04787 +0.8 2.7 polysaccharide transporter, PST family compare
H281DRAFT_04544 +0.8 1.6 diacylglycerol kinase (ATP) compare
H281DRAFT_01321 +0.8 2.7 probable H4MPT-linked C1 transfer pathway protein compare
H281DRAFT_05890 +0.8 2.0 carbohydrate ABC transporter membrane protein 2, CUT1 family compare
H281DRAFT_02532 +0.7 2.6 Sugar phosphate isomerase/epimerase compare
H281DRAFT_03443 +0.7 3.0 Undecaprenyl-phosphate glucose phosphotransferase compare
H281DRAFT_00690 +0.7 2.0 NADPH:quinone reductase compare
H281DRAFT_04250 +0.7 3.2 DNA-binding protein Fis compare
H281DRAFT_06175 +0.7 1.6 DNA repair exonuclease compare
H281DRAFT_04933 +0.7 1.9 Nitroreductase compare
H281DRAFT_03042 +0.7 2.3 NADP-dependent 3-hydroxy acid dehydrogenase YdfG compare
H281DRAFT_01633 +0.7 2.6 hypothetical protein compare
H281DRAFT_03297 +0.7 1.7 ADP-ribose pyrophosphatase YjhB, NUDIX family compare
H281DRAFT_05248 +0.7 2.1 hypothetical protein compare
H281DRAFT_00375 +0.7 1.5 benzoyl-CoA oxygenase, component A compare
H281DRAFT_01377 +0.7 1.6 hypothetical protein compare
H281DRAFT_04996 +0.7 2.3 type III secretion protein C compare
H281DRAFT_00376 +0.7 2.8 transcriptional regulator, TetR family compare
H281DRAFT_04269 +0.7 4.4 L-glutamate ABC transporter membrane protein /L-aspartate ABC transporter membrane protein compare
H281DRAFT_05075 +0.7 2.0 hypothetical protein compare
H281DRAFT_00051 +0.7 1.5 hypothetical protein compare
H281DRAFT_03192 +0.7 2.3 D-methionine transport system substrate-binding protein compare
H281DRAFT_06549 +0.7 2.2 transcriptional regulator, AraC family compare
H281DRAFT_02811 +0.7 1.4 Protein of unknown function (DUF2934) compare
H281DRAFT_02600 +0.6 1.5 Undecaprenyl-diphosphatase (EC 3.6.1.27) compare
H281DRAFT_01709 +0.6 2.8 hypothetical protein compare
H281DRAFT_01028 +0.6 1.3 peptide/nickel transport system permease protein compare
H281DRAFT_04790 +0.6 2.2 hypothetical protein compare
H281DRAFT_01262 +0.6 1.6 putative spermidine/putrescine transport system permease protein compare
H281DRAFT_03130 +0.6 1.6 transcriptional regulator, XRE family with cupin sensor compare
H281DRAFT_03396 +0.6 1.6 AraC-type DNA-binding protein compare
H281DRAFT_05536 +0.6 2.7 hypothetical protein compare
H281DRAFT_01215 +0.6 2.3 hypothetical protein compare
H281DRAFT_01668 +0.6 1.4 gamma-aminobutyrate:proton symporter, AAT family compare
H281DRAFT_02178 +0.6 2.2 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase compare
H281DRAFT_06459 +0.6 1.8 flagellar motor switch protein FliG compare
H281DRAFT_01105 +0.6 2.9 transcriptional regulator, AraC family compare
H281DRAFT_06220 +0.6 1.9 hypothetical protein compare
H281DRAFT_05041 +0.6 1.3 RNA polymerase sigma-70 factor, ECF subfamily compare
H281DRAFT_06164 +0.6 2.9 protein of unknown function (DUF4400) compare
H281DRAFT_05049 +0.6 1.3 hypothetical protein compare
H281DRAFT_06238 +0.6 1.3 hypothetical protein compare
H281DRAFT_00339 +0.6 1.1 Uncharacterized membrane protein compare
H281DRAFT_01358 +0.6 2.1 Uncharacterized protein, RmlC-like cupin domain compare
H281DRAFT_04896 +0.6 1.5 transcriptional regulator, AraC family with amidase-like domain compare
H281DRAFT_04002 +0.6 1.6 tRNA_Arg_ACG compare
H281DRAFT_00010 +0.6 2.8 nitrile hydratase compare
H281DRAFT_01442 +0.6 2.9 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
H281DRAFT_03009 +0.6 2.7 acetyl coenzyme A synthetase (ADP forming), alpha domain-containing protein compare
H281DRAFT_01412 +0.6 1.6 Superinfection immunity protein compare
H281DRAFT_06017 +0.6 1.2 Exodeoxyribonuclease VII small subunit compare
H281DRAFT_02287 +0.6 1.9 PKHD-type hydroxylase compare
H281DRAFT_01052 +0.6 1.7 hypothetical protein compare
H281DRAFT_00240 +0.6 4.0 two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family compare
H281DRAFT_01011 +0.6 2.0 Uncharacterized membrane protein YkgB compare
H281DRAFT_06422 +0.6 1.2 hypothetical protein compare
H281DRAFT_03292 +0.6 1.2 Mn-containing catalase compare
H281DRAFT_05945 +0.6 2.8 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_03732 +0.6 1.8 carbohydrate ABC transporter membrane protein 1, CUT1 family compare
H281DRAFT_05327 +0.6 3.8 Outer membrane protein (porin) compare
H281DRAFT_02614 +0.6 1.4 L-glutamine ABC transporter membrane protein compare
H281DRAFT_01222 +0.6 1.3 monosaccharide ABC transporter membrane protein, CUT2 family compare
H281DRAFT_01244 +0.6 1.9 Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain compare
H281DRAFT_04934 +0.6 1.7 Sensors of blue-light using FAD compare
H281DRAFT_01735 +0.6 2.4 two-component system, OmpR family, heavy metal sensor histidine kinase CusS compare
H281DRAFT_05776 +0.5 2.5 flagellar biosynthetic protein FliP compare
H281DRAFT_03346 +0.5 1.3 Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family compare
H281DRAFT_04039 +0.5 1.4 hypothetical protein compare
H281DRAFT_04268 +0.5 3.7 L-glutamate ABC transporter membrane protein /L-aspartate ABC transporter membrane protein compare
H281DRAFT_01799 +0.5 1.5 RNA polymerase sigma-70 factor, ECF subfamily compare
H281DRAFT_03313 +0.5 2.1 hypothetical protein compare
H281DRAFT_01761 +0.5 1.2 conserved domain-containing protein compare
H281DRAFT_02941 +0.5 2.0 Crotonobetainyl-CoA:carnitine CoA-transferase CaiB compare
H281DRAFT_01239 +0.5 1.1 hypothetical protein compare
H281DRAFT_01705 +0.5 2.1 aliphatic nitrilase compare
H281DRAFT_01572 +0.5 1.1 Predicted oxidoreductase compare
H281DRAFT_00927 +0.5 2.6 UPF0755 protein compare
H281DRAFT_03488 +0.5 2.8 Predicted amidohydrolase compare
H281DRAFT_03103 +0.5 2.5 hypothetical protein compare
H281DRAFT_00408 +0.5 2.1 Protein of unknown function (DUF1328) compare
H281DRAFT_05404 +0.5 2.2 amino acid ABC transporter substrate-binding protein, PAAT family compare
H281DRAFT_00236 +0.5 2.2 sigma54 specific transcriptional regulator, Fis family compare
H281DRAFT_03881 +0.5 1.9 isoquinoline 1-oxidoreductase, alpha subunit compare
H281DRAFT_03277 +0.5 1.5 hypothetical protein compare
H281DRAFT_03418 +0.5 1.5 3-hydroxyisobutyrate dehydrogenase compare
H281DRAFT_01372 +0.5 1.1 protocatechuate 4,5-dioxygenase alpha subunit (EC 1.13.11.8) compare
H281DRAFT_04049 +0.5 3.5 glutathione transport system ATP-binding protein compare
H281DRAFT_01207 +0.5 1.6 SPFH domain, Band 7 family protein compare
H281DRAFT_06153 +0.5 2.0 hypothetical protein compare
H281DRAFT_05744 +0.5 1.7 methyl-accepting chemotaxis sensory transducer with TarH sensor compare
H281DRAFT_04470 +0.5 1.4 adenosylhomocysteine nucleosidase compare
H281DRAFT_05537 +0.5 0.9 transcriptional regulator, IclR family compare
H281DRAFT_03280 +0.5 2.3 UDP-glucuronate decarboxylase compare
H281DRAFT_03335 +0.5 1.8 transcriptional regulator, LysR family compare
H281DRAFT_01279 +0.5 1.6 Nicotinamidase-related amidase compare
H281DRAFT_03810 +0.5 1.3 citrate-Mg2+:H+ or citrate-Ca2+:H+ symporter, CitMHS family compare
H281DRAFT_05753 +0.5 3.1 flagellar biosynthesis protein FlhA compare
H281DRAFT_03144 +0.5 2.5 putative phosphoesterase compare
H281DRAFT_05759 +0.5 1.1 flagella synthesis protein FlgN compare
H281DRAFT_04004 +0.5 2.2 (p)ppGpp synthetase I, SpoT/RelA compare
H281DRAFT_00050 +0.5 0.9 Uncharacterized conserved protein, DUF1330 family compare
H281DRAFT_04369 +0.5 1.7 Uncharacterized conserved protein YjbJ, UPF0337 family compare
H281DRAFT_03852 +0.5 2.2 Nitroreductase compare
H281DRAFT_04087 +0.5 1.1 hypothetical protein compare
H281DRAFT_02295 +0.5 1.2 hypothetical protein compare
H281DRAFT_05483 +0.5 2.3 protein of unknown function (DUF1840) compare
H281DRAFT_04270 +0.5 3.7 L-glutamate-binding protein /L-aspartate-binding protein compare
H281DRAFT_04433 +0.5 2.0 Undecaprenyl-diphosphatase compare
H281DRAFT_06134 +0.5 1.3 hypothetical protein compare
H281DRAFT_05653 +0.5 1.4 hypothetical protein compare
H281DRAFT_01002 +0.5 1.1 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ compare
H281DRAFT_05121 +0.5 1.5 hypothetical protein compare
H281DRAFT_00653 +0.5 2.4 Enoyl-CoA hydratase/carnithine racemase compare
H281DRAFT_03802 +0.5 1.9 two-component system, OmpR family, sensor histidine kinase TctE compare
H281DRAFT_01318 +0.5 1.0 hypothetical protein compare
H281DRAFT_06021 +0.5 2.4 NADH dehydrogenase compare
H281DRAFT_00970 +0.5 1.8 putative Mg2+ transporter-C (MgtC) family protein compare
H281DRAFT_02349 +0.5 1.5 general secretion pathway protein J compare
H281DRAFT_03368 +0.5 2.8 Uncharacterised protein family protein compare
H281DRAFT_03413 +0.5 3.0 high affinity sulphate transporter 1 compare
H281DRAFT_06010 +0.5 1.9 hypothetical protein compare
H281DRAFT_01426 +0.5 1.4 transcriptional regulator, TetR family compare
H281DRAFT_05978 +0.5 1.8 Sugar lactone lactonase YvrE compare
H281DRAFT_00254 +0.5 3.6 DNA (cytosine-5)-methyltransferase 1 compare
H281DRAFT_04899 +0.5 1.6 microcin C transport system ATP-binding protein compare
H281DRAFT_03386 +0.5 2.9 Predicted arabinose efflux permease, MFS family compare
H281DRAFT_01417 +0.5 1.5 anti-sigma-28 factor, FlgM family compare
H281DRAFT_03083 +0.5 1.8 Redoxin compare
H281DRAFT_03400 +0.5 1.2 cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein (EC 1.10.3.10) compare
H281DRAFT_05852 +0.5 3.0 transcriptional regulator, TetR family compare
H281DRAFT_03577 +0.5 1.2 hypothetical protein compare
H281DRAFT_05190 +0.5 2.1 transcriptional regulator, TetR family compare
H281DRAFT_05476 +0.5 1.3 Short-chain dehydrogenase compare
H281DRAFT_02732 +0.5 0.9 RNA polymerase sigma-70 factor, ECF subfamily compare
H281DRAFT_03199 +0.5 2.3 flagellar transcriptional activator FlhD compare
H281DRAFT_03278 +0.5 0.9 Threonine dehydrogenase compare
H281DRAFT_05330 +0.5 1.4 urea transporter compare
H281DRAFT_01509 +0.5 1.2 Uncharacterized conserved protein YgbK, DUF1537 family compare
H281DRAFT_00152 +0.5 0.9 Protein of unknown function (DUF3460) compare
H281DRAFT_05816 +0.5 3.6 soluble lytic murein transglycosylase compare
H281DRAFT_06494 +0.5 1.4 transcriptional regulator, IclR family compare
H281DRAFT_06564 +0.4 2.2 hypothetical protein compare
H281DRAFT_04145 +0.4 2.4 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_04880 +0.4 1.4 PRC-barrel domain-containing protein compare
H281DRAFT_05777 +0.4 2.3 flagellar protein FliO/FliZ compare
H281DRAFT_06041 +0.4 2.3 Tautomerase enzyme compare
H281DRAFT_03504 +0.4 2.2 phosphonoacetate hydrolase compare
H281DRAFT_04530 +0.4 1.8 K+-transporting ATPase ATPase B chain compare
H281DRAFT_06055 +0.4 2.3 Hemolysin, contains CBS domains compare
H281DRAFT_06437 +0.4 1.6 FdhD protein compare
H281DRAFT_00654 +0.4 1.5 putative spermidine/putrescine transport system substrate-binding protein compare
H281DRAFT_00201 +0.4 1.6 hypothetical protein compare
H281DRAFT_05438 +0.4 1.0 transcriptional regulator, IclR family compare
H281DRAFT_01311 +0.4 1.1 fructose-bisphosphate aldolase compare
H281DRAFT_01703 +0.4 2.4 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
H281DRAFT_04984 +0.4 1.7 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) compare
H281DRAFT_00820 +0.4 1.3 DNA-binding transcriptional regulator, MerR family compare
H281DRAFT_01131 +0.4 1.8 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_01057 +0.4 1.4 monosaccharide ABC transporter ATP-binding protein, CUT2 family (TC 3.A.1.2.-) compare
H281DRAFT_01463 +0.4 1.7 Steroid 5-alpha reductase family enzyme compare
H281DRAFT_03519 +0.4 1.5 hypothetical protein compare
H281DRAFT_01047 +0.4 1.2 GTP cyclohydrolase II compare
H281DRAFT_05813 +0.4 1.9 sensor histidine kinase inhibitor, KipI family compare
H281DRAFT_05915 +0.4 1.1 hypothetical protein compare
H281DRAFT_01092 +0.4 1.0 transcriptional regulator, LysR family compare
H281DRAFT_05357 +0.4 2.4 ornithine cyclodeaminase compare
H281DRAFT_04368 +0.4 3.2 two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family compare
H281DRAFT_01914 +0.4 3.0 Predicted PurR-regulated permease PerM compare
H281DRAFT_03884 +0.4 1.8 RND family efflux transporter, MFP subunit compare
H281DRAFT_01791 +0.4 1.9 Putative intracellular protease/amidase compare
H281DRAFT_03742 +0.4 2.0 Sugar phosphate permease compare
H281DRAFT_02880 +0.4 1.9 chemotaxis protein methyltransferase CheR compare
H281DRAFT_04400 +0.4 3.5 membrane-bound lytic murein transglycosylase D compare
H281DRAFT_02701 +0.4 1.1 dihydroxyacetone kinase, C-terminal domain compare
H281DRAFT_00843 +0.4 1.7 lipoprotein NlpD compare
H281DRAFT_00733 +0.4 1.3 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_03260 +0.4 2.3 D-serine deaminase, pyridoxal phosphate-dependent compare
H281DRAFT_00406 +0.4 1.4 Signal transduction histidine kinase compare
H281DRAFT_01095 +0.4 1.4 Glyoxylase, beta-lactamase superfamily II compare
H281DRAFT_03473 +0.4 1.8 hypothetical protein compare
H281DRAFT_02651 +0.4 0.8 transcriptional regulator, MerR family compare
H281DRAFT_03399 +0.4 1.4 cytochrome bd-I ubiquinol oxidase subunit 2 apoprotein (EC 1.10.3.10) compare


Specific Phenotypes

None in this experiment

For Paraburkholderia bryophila 376MFSha3.1 in carbon source experiments

For carbon source 2-furoic acid across organisms