Experiment set6IT022 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

Sodium propionate carbon source

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_05259 +2.1 16.7 transcriptional regulator, LysR family compare
H281DRAFT_06077 +1.4 7.3 transcriptional regulator, LysR family conserved
H281DRAFT_01417 +1.2 4.5 anti-sigma-28 factor, FlgM family compare
H281DRAFT_05756 +1.1 3.7 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG compare
H281DRAFT_02052 +1.0 2.6 hypothetical protein compare
H281DRAFT_05768 +1.0 2.3 flagellar L-ring protein precursor FlgH compare
H281DRAFT_05737 +0.9 4.3 flagellar transcriptional activator FlhD compare
H281DRAFT_06180 +0.9 3.4 hypothetical protein compare
H281DRAFT_02008 +0.9 6.5 phosphocarrier protein compare
H281DRAFT_03575 +0.9 3.1 hypothetical protein compare
H281DRAFT_02007 +0.9 7.7 phosphoenolpyruvate--protein phosphotransferase compare
H281DRAFT_03418 +0.8 1.9 3-hydroxyisobutyrate dehydrogenase compare
H281DRAFT_00377 +0.8 2.5 N-carbamoyl-L-amino-acid hydrolase compare
H281DRAFT_05744 +0.8 2.5 methyl-accepting chemotaxis sensory transducer with TarH sensor compare
H281DRAFT_01442 +0.8 3.9 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
H281DRAFT_05774 +0.8 3.3 flagellar biosynthetic protein FliR compare
H281DRAFT_05763 +0.8 3.4 flagellar basal-body rod protein FlgC compare
H281DRAFT_05754 +0.8 4.7 flagellar biosynthesis protein FlhF compare
H281DRAFT_01705 +0.8 2.1 aliphatic nitrilase compare
H281DRAFT_05536 +0.8 1.6 hypothetical protein compare
H281DRAFT_01088 +0.7 1.8 Lactate dehydrogenase compare
H281DRAFT_01464 +0.7 2.9 Anti-sigma-K factor RskA compare
H281DRAFT_05561 +0.7 3.3 transcriptional regulator, TetR family compare
H281DRAFT_03130 +0.7 1.2 transcriptional regulator, XRE family with cupin sensor compare
H281DRAFT_04889 +0.7 1.4 hypothetical protein compare
H281DRAFT_06026 +0.7 2.8 chromate transporter compare
H281DRAFT_00690 +0.7 2.1 NADPH:quinone reductase compare
H281DRAFT_01125 +0.7 1.7 protein of unknown function (DUF2760) compare
H281DRAFT_01584 +0.7 1.5 enamidase compare
H281DRAFT_04391 +0.7 5.2 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_04549 +0.7 3.4 Protein of unknown function (DUF3619) compare
H281DRAFT_03733 +0.7 1.6 carbohydrate ABC transporter ATP-binding protein, CUT1 family compare
H281DRAFT_06459 +0.7 2.3 flagellar motor switch protein FliG compare
H281DRAFT_06494 +0.7 0.9 transcriptional regulator, IclR family compare
H281DRAFT_03796 +0.7 2.0 protein of unknown function (DUF4148) compare
H281DRAFT_02352 +0.7 3.9 general secretion pathway protein G compare
H281DRAFT_01181 +0.7 2.6 Acyl-CoA synthetase (NDP forming) compare
H281DRAFT_05752 +0.7 4.0 flagellar biosynthetic protein FlhB compare
H281DRAFT_05210 +0.7 1.5 Sugar phosphate isomerase/epimerase compare
H281DRAFT_06474 +0.7 1.5 amino acid ABC transporter membrane protein 1, PAAT family compare
H281DRAFT_05786 +0.6 4.9 flagellar M-ring protein FliF compare
H281DRAFT_03154 +0.6 2.3 two-component system, NarL family, sensor kinase compare
H281DRAFT_02732 +0.6 1.2 RNA polymerase sigma-70 factor, ECF subfamily compare
H281DRAFT_01382 +0.6 1.6 Cellulose biosynthesis protein BcsR compare
H281DRAFT_03995 +0.6 1.6 hypothetical protein compare
H281DRAFT_02350 +0.6 3.1 general secretion pathway protein I compare
H281DRAFT_05260 +0.6 3.7 Uncharacterized membrane protein YccC compare
H281DRAFT_01207 +0.6 2.6 SPFH domain, Band 7 family protein compare
H281DRAFT_01706 +0.6 1.6 transcriptional regulator, MarR family compare
H281DRAFT_02179 +0.6 4.7 two component transcriptional regulator, LuxR family compare
H281DRAFT_02614 +0.6 2.2 L-glutamine ABC transporter membrane protein compare
H281DRAFT_05765 +0.6 4.6 flagellar hook protein FlgE compare
H281DRAFT_05770 +0.6 3.8 flagellar protein FlgJ compare
H281DRAFT_00352 +0.6 2.2 transcriptional regulator, LysR family compare
H281DRAFT_00687 +0.6 2.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
H281DRAFT_01372 +0.6 1.7 protocatechuate 4,5-dioxygenase alpha subunit (EC 1.13.11.8) compare
H281DRAFT_03278 +0.6 1.3 Threonine dehydrogenase compare
H281DRAFT_00996 +0.6 1.8 ChrR Cupin-like domain-containing protein compare
H281DRAFT_01237 +0.6 1.0 DnaJ-class molecular chaperone with C-terminal Zn finger domain compare
H281DRAFT_03822 +0.6 2.3 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_04390 +0.6 4.5 ATP-binding cassette, subfamily B compare
H281DRAFT_02549 +0.6 1.6 putative oxidoreductase compare
H281DRAFT_05387 +0.6 2.9 Pimeloyl-ACP methyl ester carboxylesterase compare
H281DRAFT_02347 +0.6 4.5 general secretion pathway protein L compare
H281DRAFT_05878 +0.6 3.1 Multidrug efflux pump subunit AcrB compare
H281DRAFT_06536 +0.6 1.6 rare lipoprotein A compare
H281DRAFT_06269 +0.6 1.6 hypoxanthine phosphoribosyltransferase compare
H281DRAFT_04781 +0.6 1.3 putative colanic acid biosynthesis acetyltransferase WcaF compare
H281DRAFT_03199 +0.6 2.9 flagellar transcriptional activator FlhD compare
H281DRAFT_03220 +0.6 1.3 4-hydroxy-tetrahydrodipicolinate synthase compare
H281DRAFT_02600 +0.6 1.3 Undecaprenyl-diphosphatase (EC 3.6.1.27) compare
H281DRAFT_01358 +0.6 2.6 Uncharacterized protein, RmlC-like cupin domain compare
H281DRAFT_05781 +0.6 3.1 flagellar hook-length control protein FliK compare
H281DRAFT_02262 +0.6 2.1 hypothetical protein compare
H281DRAFT_02856 +0.6 1.6 Protein of unknown function (DUF1488) compare
H281DRAFT_03390 +0.6 1.3 H+/Cl- antiporter ClcA compare
H281DRAFT_01299 +0.6 0.9 methylene-tetrahydromethanopterin dehydrogenase compare
H281DRAFT_05505 +0.6 2.6 hypothetical protein compare
H281DRAFT_02791 +0.6 1.9 apolipoprotein D and lipocalin family protein compare
H281DRAFT_01021 +0.6 1.5 Nitroreductase compare
H281DRAFT_01551 +0.6 1.9 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
H281DRAFT_06296 +0.6 1.9 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_02345 +0.6 2.5 type II secretion system protein N (GspN) compare
H281DRAFT_02724 +0.6 2.7 Beta-lactamase class C and other penicillin binding proteins compare
H281DRAFT_01108 +0.6 1.5 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_01239 +0.6 1.5 hypothetical protein compare
H281DRAFT_03438 +0.6 3.1 polysaccharide transporter, PST family compare
H281DRAFT_00147 +0.6 1.8 uncharacterized domain 1-containing protein compare
H281DRAFT_01612 +0.6 2.8 2OG-Fe(II) oxygenase superfamily protein compare
H281DRAFT_03375 +0.6 1.6 Dimerisation domain-containing protein compare
H281DRAFT_05775 +0.5 2.2 flagellar biosynthetic protein FliQ compare
H281DRAFT_02737 +0.5 3.0 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component compare
H281DRAFT_03748 +0.5 1.8 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_00885 +0.5 2.9 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ compare
H281DRAFT_03341 +0.5 2.5 Predicted arabinose efflux permease, MFS family compare
H281DRAFT_02718 +0.5 2.3 Glycine/D-amino acid oxidase (deaminating) compare
H281DRAFT_01540 +0.5 2.8 5-(hydroxymethyl)furfural/furfural oxidase compare
H281DRAFT_03878 +0.5 1.7 xylose ABC transporter ATP-binding protein compare
H281DRAFT_06204 +0.5 2.8 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
H281DRAFT_06164 +0.5 2.0 protein of unknown function (DUF4400) compare
H281DRAFT_00722 +0.5 1.2 transcriptional regulator, Crp/Fnr family compare
H281DRAFT_05012 +0.5 0.9 hypothetical protein compare
H281DRAFT_06510 +0.5 1.5 methyl-accepting chemotaxis protein compare
H281DRAFT_05769 +0.5 3.8 flagellar P-ring protein precursor FlgI compare
H281DRAFT_04516 +0.5 2.5 septum formation protein compare
H281DRAFT_05785 +0.5 2.6 flagellar motor switch protein FliG compare
H281DRAFT_05921 +0.5 2.6 Sugar phosphate permease compare
H281DRAFT_02651 +0.5 1.0 transcriptional regulator, MerR family compare
H281DRAFT_04535 +0.5 1.4 quaternary ammonium compound-resistance protein SugE compare
H281DRAFT_04776 +0.5 2.2 GDPmannose 4,6-dehydratase compare
H281DRAFT_03502 +0.5 1.5 2-aminoethylphosphonate transport system permease protein compare
H281DRAFT_01467 +0.5 1.9 hypothetical protein compare
H281DRAFT_04015 +0.5 2.8 hypothetical protein compare
H281DRAFT_05762 +0.5 1.2 flagellar basal-body rod protein FlgB compare
H281DRAFT_03127 +0.5 1.8 oligopeptide transport system permease protein compare
H281DRAFT_03742 +0.5 2.0 Sugar phosphate permease compare
H281DRAFT_03023 +0.5 1.0 Protein of unknown function (DUF2866) compare
H281DRAFT_02156 +0.5 3.7 transcriptional regulator, AsnC family compare
H281DRAFT_02709 +0.5 1.8 GntR family transcriptional regulator compare
H281DRAFT_04323 +0.5 1.4 Branched-chain amino acid transport protein compare
H281DRAFT_03859 +0.5 2.6 hypothetical protein compare
H281DRAFT_05779 +0.5 3.8 flagellar motor switch protein FliM compare
H281DRAFT_05776 +0.5 1.5 flagellar biosynthetic protein FliP compare
H281DRAFT_06083 +0.5 0.8 heat shock protein Hsp20 compare
H281DRAFT_05761 +0.5 3.9 flagella basal body P-ring formation protein FlgA compare
H281DRAFT_02349 +0.5 2.8 general secretion pathway protein J compare
H281DRAFT_02968 +0.5 1.4 amidase compare
H281DRAFT_03764 +0.5 1.8 ribulose-bisphosphate carboxylase large chain compare
H281DRAFT_02058 +0.5 0.8 cholesterol transport system auxiliary component compare
H281DRAFT_04935 +0.5 1.1 D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4) compare
H281DRAFT_03475 +0.5 2.3 hypothetical protein compare
H281DRAFT_05013 +0.5 2.1 type III secretion protein D compare
H281DRAFT_02429 +0.5 2.0 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_00940 +0.5 1.1 psiF repeat-containing protein compare
H281DRAFT_01246 +0.5 0.9 hypothetical protein compare
H281DRAFT_03495 +0.5 1.8 transcriptional regulator, XRE family compare
H281DRAFT_02287 +0.5 0.8 PKHD-type hydroxylase compare
H281DRAFT_02571 +0.5 1.1 amino acid ABC transporter substrate-binding protein, PAAT family compare
H281DRAFT_01514 +0.5 1.5 ribose 1,5-bisphosphokinase compare
H281DRAFT_06330 +0.5 1.6 sarcosine oxidase subunit beta compare
H281DRAFT_02835 +0.5 2.4 Membrane bound FAD containing D-sorbitol dehydrogenase compare
H281DRAFT_05476 +0.5 1.1 Short-chain dehydrogenase compare
H281DRAFT_05873 +0.5 1.3 amino acid ABC transporter ATP-binding protein, PAAT family compare
H281DRAFT_01739 +0.5 2.0 Signal transduction histidine kinase compare
H281DRAFT_05540 +0.5 1.9 transcriptional regulator, LacI family compare
H281DRAFT_03419 +0.5 1.7 4-carboxy-4-hydroxy-2-oxoadipate aldolase (EC 4.1.3.-) compare
H281DRAFT_04775 +0.5 1.5 tyrosine-protein kinase Etk/Wzc compare
H281DRAFT_02784 +0.5 1.8 Uncharacterized conserved protein YecE, DUF72 family compare
H281DRAFT_04400 +0.5 4.1 membrane-bound lytic murein transglycosylase D compare
H281DRAFT_00075 +0.5 1.5 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_03915 +0.5 1.7 UDPglucose 6-dehydrogenase compare
H281DRAFT_01173 +0.5 1.9 Outer membrane protein (porin) compare
H281DRAFT_01530 +0.5 1.7 Uncharacterized membrane-anchored protein compare
H281DRAFT_00010 +0.5 1.3 nitrile hydratase compare
H281DRAFT_01745 +0.5 2.3 transcriptional regulator, LacI family compare
H281DRAFT_05021 +0.5 1.0 Response regulator compare
H281DRAFT_03364 +0.5 2.8 Crotonobetainyl-CoA:carnitine CoA-transferase CaiB compare
H281DRAFT_03163 +0.5 1.8 Protein of unknown function (DUF3348) compare
H281DRAFT_03486 +0.5 2.2 osmoprotectant transport system permease protein compare
H281DRAFT_00966 +0.5 1.5 uroporphyrinogen-III C-methyltransferase (EC 2.1.1.107) compare
H281DRAFT_03300 +0.5 1.4 cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein compare
H281DRAFT_03738 +0.5 1.9 hypothetical protein compare
H281DRAFT_05376 +0.5 1.2 hypothetical protein compare
H281DRAFT_03837 +0.5 1.3 hypothetical protein compare
H281DRAFT_01351 +0.5 1.0 hypothetical protein compare
H281DRAFT_02354 +0.5 2.9 general secretion pathway protein F compare
H281DRAFT_06356 +0.5 0.7 RraA famliy compare
H281DRAFT_05462 +0.5 1.7 hypothetical protein compare
H281DRAFT_02176 +0.4 2.6 monosaccharide ABC transporter membrane protein, CUT2 family compare
H281DRAFT_01244 +0.4 1.2 Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain compare
H281DRAFT_00227 +0.4 1.7 two component transcriptional regulator, winged helix family compare
H281DRAFT_02574 +0.4 1.0 Glycine/D-amino acid oxidase (deaminating) compare
H281DRAFT_01724 +0.4 2.4 methionine aminopeptidase, type I compare
H281DRAFT_02927 +0.4 2.9 DSF synthase compare
H281DRAFT_06464 +0.4 2.2 hypothetical protein compare
H281DRAFT_01547 +0.4 1.7 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_03399 +0.4 1.2 cytochrome bd-I ubiquinol oxidase subunit 2 apoprotein (EC 1.10.3.10) compare
H281DRAFT_02638 +0.4 1.4 Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA) compare
H281DRAFT_06422 +0.4 1.3 hypothetical protein compare
H281DRAFT_05836 +0.4 1.9 Threonine/homoserine/homoserine lactone efflux protein compare
H281DRAFT_02958 +0.4 1.9 putative spermidine/putrescine transport system ATP-binding protein compare
H281DRAFT_05766 +0.4 1.0 flagellar basal-body rod protein FlgF compare
H281DRAFT_06500 +0.4 1.0 Lactate dehydrogenase compare
H281DRAFT_05915 +0.4 1.1 hypothetical protein compare
H281DRAFT_03771 +0.4 1.2 hypothetical protein compare
H281DRAFT_05407 +0.4 1.8 putative spermidine/putrescine transport system permease protein compare
H281DRAFT_01998 +0.4 1.4 tRNA (cytidine/uridine-2'-O-)-methyltransferase compare
H281DRAFT_05437 +0.4 1.8 Sugar phosphate permease compare
H281DRAFT_02944 +0.4 1.4 aldehyde dehydrogenase (NAD+) compare
H281DRAFT_02443 +0.4 0.9 alkylhydroperoxidase AhpD family core domain-containing protein compare
H281DRAFT_05810 +0.4 1.8 Uncharacterized membrane protein compare
H281DRAFT_06153 +0.4 2.1 hypothetical protein compare
H281DRAFT_04582 +0.4 2.2 ADP-ribose pyrophosphatase compare
H281DRAFT_01305 +0.4 1.4 hypothetical protein compare
H281DRAFT_03503 +0.4 1.3 transcriptional regulator, GntR family compare
H281DRAFT_01795 +0.4 2.4 Protein N-acetyltransferase, RimJ/RimL family compare
H281DRAFT_06213 +0.4 1.4 hypothetical protein compare
H281DRAFT_02358 +0.4 1.3 GTPase, G3E family compare
H281DRAFT_02178 +0.4 1.6 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase compare
H281DRAFT_03256 +0.4 1.6 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Sodium propionate in Paraburkholderia bryophila 376MFSha3.1

For carbon source Sodium propionate across organisms