Experiment set6IT022 for Bifidobacterium breve UCC2003
reconstituted MRS with Difucosyllactose 7.9 mM
Group: carbon sourceMedia: reconstituted MRS + Difucosyllactose (7.9 mM), pH=6.8
Culturing: Bifido_ML2, 96 deep-well microplate; 1.2 mL volume, Anaerobic, at 37 (C), shaken=0 rpm
By: Anthony Shiver on 7/15/2020
Specific Phenotypes
For 3 genes in this experiment
For carbon source Difucosyllactose in Bifidobacterium breve UCC2003
For carbon source Difucosyllactose across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Beta-Glucoside Metabolism | 1 |
| Fructooligosaccharides(FOS) and Raffinose Utilization | 1 |
| Purine conversions | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Purine metabolism
- Cyanoamino acid metabolism
- Starch and sucrose metabolism
- Phenylpropanoid biosynthesis
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| neolinustatin bioactivation | 3 | 2 | 2 |
| linustatin bioactivation | 4 | 2 | 2 |
| lotaustralin degradation | 2 | 1 | 1 |
| linamarin degradation | 2 | 1 | 1 |
| cellulose degradation II (fungi) | 3 | 1 | 1 |
| coumarin biosynthesis (via 2-coumarate) | 5 | 2 | 1 |
| α-tomatine degradation | 6 | 1 | 1 |
| firefly bioluminescence | 14 | 2 | 1 |