Experiment set6IT020 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

Gallic Acid carbon source

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_05323 +1.4 2.3 hypothetical protein compare
H281DRAFT_05766 +1.3 3.0 flagellar basal-body rod protein FlgF compare
H281DRAFT_03440 +1.3 3.3 PAP2 superfamily protein compare
H281DRAFT_01261 +1.2 3.5 putative spermidine/putrescine transport system permease protein compare
H281DRAFT_03159 +1.2 2.2 hypothetical protein compare
H281DRAFT_01633 +1.2 4.3 hypothetical protein compare
H281DRAFT_03297 +1.1 2.3 ADP-ribose pyrophosphatase YjhB, NUDIX family compare
H281DRAFT_03292 +1.1 2.0 Mn-containing catalase compare
H281DRAFT_05705 +1.0 1.4 hypothetical protein compare
H281DRAFT_04346 +1.0 3.2 uncharacterized protein compare
H281DRAFT_03184 +1.0 1.7 cation diffusion facilitator family transporter compare
H281DRAFT_03157 +1.0 3.7 transcriptional regulator, LysR family compare
H281DRAFT_04787 +0.9 2.3 polysaccharide transporter, PST family compare
H281DRAFT_06462 +0.9 0.9 hypothetical protein compare
H281DRAFT_04002 +0.9 2.1 tRNA_Arg_ACG compare
H281DRAFT_01689 +0.9 3.1 transcriptional regulator, AraC family with amidase-like domain compare
H281DRAFT_02905 +0.9 1.8 L-lactate dehydrogenase complex protein LldE compare
H281DRAFT_04607 +0.9 2.8 hypothetical protein compare
H281DRAFT_01632 +0.9 6.6 LuxR family transcriptional regulator, quorum-sensing transcription factor LasR compare
H281DRAFT_00996 +0.9 2.0 ChrR Cupin-like domain-containing protein compare
H281DRAFT_06453 +0.9 2.1 Protein required for attachment to host cells compare
H281DRAFT_02193 +0.9 0.9 hypothetical protein compare
H281DRAFT_00977 +0.9 3.0 hypothetical protein compare
H281DRAFT_03418 +0.9 1.4 3-hydroxyisobutyrate dehydrogenase compare
H281DRAFT_05123 +0.9 2.0 hypothetical protein compare
H281DRAFT_04390 +0.9 5.4 ATP-binding cassette, subfamily B compare
H281DRAFT_01067 +0.8 1.5 NitT/TauT family transport system ATP-binding protein compare
H281DRAFT_03118 +0.8 2.0 NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase compare
H281DRAFT_06002 +0.8 4.4 NADPH:quinone reductase compare
H281DRAFT_01514 +0.8 2.1 ribose 1,5-bisphosphokinase compare
H281DRAFT_06371 +0.8 2.9 TadE-like protein compare
H281DRAFT_05345 +0.8 1.1 Fur family transcriptional regulator, zinc uptake regulator compare
H281DRAFT_04391 +0.8 6.2 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_00819 +0.8 1.4 competence protein ComEA compare
H281DRAFT_01827 +0.8 1.6 hypothetical protein compare
H281DRAFT_06363 +0.8 3.1 hypothetical protein compare
H281DRAFT_06107 +0.8 2.8 GTPase, G3E family compare
H281DRAFT_01257 +0.8 1.8 Catechol 2,3-dioxygenase compare
H281DRAFT_02007 +0.8 5.5 phosphoenolpyruvate--protein phosphotransferase compare
H281DRAFT_03375 +0.8 2.2 Dimerisation domain-containing protein compare
H281DRAFT_05330 +0.8 1.7 urea transporter compare
H281DRAFT_04899 +0.8 1.7 microcin C transport system ATP-binding protein compare
H281DRAFT_01837 +0.8 1.5 hypothetical protein compare
H281DRAFT_05861 +0.8 4.4 16S rRNA. Bacterial SSU compare
H281DRAFT_04516 +0.8 2.8 septum formation protein compare
H281DRAFT_04661 +0.8 1.7 paraquat-inducible protein A compare
H281DRAFT_01246 +0.8 1.1 hypothetical protein compare
H281DRAFT_03103 +0.8 2.6 hypothetical protein compare
H281DRAFT_00725 +0.8 1.7 hypothetical protein compare
H281DRAFT_04594 +0.7 2.4 putative oxepin-CoA hydrolase (EC 3.3.2.12) (from data) compare
H281DRAFT_03413 +0.7 2.9 high affinity sulphate transporter 1 compare
H281DRAFT_03120 +0.7 1.8 putative spermidine/putrescine transport system permease protein compare
H281DRAFT_04846 +0.7 2.6 Putative flippase GtrA (transmembrane translocase of bactoprenol-linked glucose) compare
H281DRAFT_03356 +0.7 1.9 glycerate dehydrogenase compare
H281DRAFT_00950 +0.7 1.5 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_02349 +0.7 2.8 general secretion pathway protein J compare
H281DRAFT_02968 +0.7 1.6 amidase compare
H281DRAFT_01487 +0.7 2.9 hypothetical protein compare
H281DRAFT_06157 +0.7 1.4 hypothetical protein compare
H281DRAFT_03414 +0.7 1.3 outer membrane surface antigen compare
H281DRAFT_04099 +0.7 2.1 citrate synthase compare
H281DRAFT_05398 +0.7 1.3 hypothetical protein compare
H281DRAFT_01784 +0.7 3.6 Pimeloyl-ACP methyl ester carboxylesterase compare
H281DRAFT_06120 +0.7 1.2 hypothetical protein compare
H281DRAFT_05146 +0.7 1.9 methyltransferase, TIGR00027 family compare
H281DRAFT_06427 +0.7 1.2 Molecular chaperone IbpA, HSP20 family compare
H281DRAFT_03142 +0.7 3.2 Lipid-binding SYLF domain-containing protein compare
H281DRAFT_04878 +0.7 1.7 transcriptional regulator, ArsR family compare
H281DRAFT_00378 +0.7 2.1 glutamate synthase (NADPH/NADH) small chain compare
H281DRAFT_03273 +0.7 1.2 Uncharacterized membrane protein YqjE compare
H281DRAFT_01451 +0.7 1.8 carbohydrate ABC transporter ATP-binding protein, CUT1 family compare
H281DRAFT_05249 +0.7 1.7 hypothetical protein compare
H281DRAFT_06399 +0.7 1.6 transcriptional regulator, GntR family compare
H281DRAFT_04744 +0.7 1.1 enoyl-CoA hydratase compare
H281DRAFT_03066 +0.7 1.9 transcriptional regulator, LysR family compare
H281DRAFT_01308 +0.7 1.6 flavoprotein compare
H281DRAFT_03572 +0.7 1.3 Crotonobetainyl-CoA:carnitine CoA-transferase CaiB compare
H281DRAFT_03429 +0.7 1.2 cytochrome bo3 quinol oxidase subunit 4 (EC 1.10.3.-) compare
H281DRAFT_04998 +0.7 1.3 type III secretion protein T compare
H281DRAFT_02651 +0.7 1.1 transcriptional regulator, MerR family compare
H281DRAFT_06367 +0.7 1.4 pilus assembly protein CpaE compare
H281DRAFT_00763 +0.7 2.9 hypothetical protein compare
H281DRAFT_05986 +0.7 1.4 transcriptional regulator, TetR family compare
H281DRAFT_04743 +0.7 2.7 MFS transporter, DHA1 family, arabinose polymer transporter compare
H281DRAFT_06021 +0.7 2.4 NADH dehydrogenase compare
H281DRAFT_01057 +0.7 2.6 monosaccharide ABC transporter ATP-binding protein, CUT2 family (TC 3.A.1.2.-) compare
H281DRAFT_01452 +0.7 1.9 carbohydrate ABC transporter membrane protein 2, CUT1 family compare
H281DRAFT_05018 +0.7 0.7 TIGR03118 family protein compare
H281DRAFT_00668 +0.7 3.7 tagaturonate reductase compare
H281DRAFT_05075 +0.7 1.5 hypothetical protein compare
H281DRAFT_05774 +0.7 1.8 flagellar biosynthetic protein FliR compare
H281DRAFT_03399 +0.7 1.7 cytochrome bd-I ubiquinol oxidase subunit 2 apoprotein (EC 1.10.3.10) compare
H281DRAFT_03213 +0.7 1.2 hypothetical protein compare
H281DRAFT_05781 +0.6 1.7 flagellar hook-length control protein FliK compare
H281DRAFT_02287 +0.6 1.4 PKHD-type hydroxylase compare
H281DRAFT_02099 +0.6 2.2 hypothetical protein compare
H281DRAFT_05046 +0.6 1.9 Signal transduction histidine kinase compare
H281DRAFT_01021 +0.6 1.9 Nitroreductase compare
H281DRAFT_01745 +0.6 3.0 transcriptional regulator, LacI family compare
H281DRAFT_05890 +0.6 2.2 carbohydrate ABC transporter membrane protein 2, CUT1 family compare
H281DRAFT_03296 +0.6 1.0 hypothetical protein compare
H281DRAFT_06556 +0.6 1.9 hypothetical protein compare
H281DRAFT_00698 +0.6 1.7 transcriptional regulator, TetR family compare
H281DRAFT_05882 +0.6 1.6 amino acid ABC transporter substrate-binding protein, PAAT family compare
H281DRAFT_02404 +0.6 5.2 L-proline dehydrogenase /delta-1-pyrroline-5-carboxylate dehydrogenase compare
H281DRAFT_05610 +0.6 1.2 hypothetical protein compare
H281DRAFT_00253 +0.6 1.5 Pimeloyl-ACP methyl ester carboxylesterase compare
H281DRAFT_04941 +0.6 1.5 Uncharacterized conserved protein, Ntn-hydrolase superfamily compare
H281DRAFT_04777 +0.6 1.5 GDP-L-fucose synthase compare
H281DRAFT_05609 +0.6 0.9 penicillin-binding protein 1A compare
H281DRAFT_04937 +0.6 1.1 MFS transporter, DHA2 family, multidrug resistance protein compare
H281DRAFT_04470 +0.6 1.1 adenosylhomocysteine nucleosidase compare
H281DRAFT_01083 +0.6 2.0 hypothetical protein compare
H281DRAFT_00896 +0.6 1.0 ATP-dependent Clp protease proteolytic subunit ClpP compare
H281DRAFT_00004 +0.6 3.9 hypothetical protein compare
H281DRAFT_01899 +0.6 1.6 hypothetical protein compare
H281DRAFT_03771 +0.6 1.4 hypothetical protein compare
H281DRAFT_00106 +0.6 1.3 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_04202 +0.6 2.2 type IV pilus assembly protein PilA compare
H281DRAFT_01377 +0.6 1.1 hypothetical protein compare
H281DRAFT_01122 +0.6 1.3 hypothetical protein compare
H281DRAFT_05667 +0.6 3.0 serine protease DegQ compare
H281DRAFT_03860 +0.6 1.7 hypothetical protein compare
H281DRAFT_01184 +0.6 1.2 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_00722 +0.6 1.0 transcriptional regulator, Crp/Fnr family compare
H281DRAFT_00223 +0.6 3.8 amino acid ABC transporter membrane protein 1, PAAT family compare
H281DRAFT_01809 +0.6 1.2 3-dehydroquinate dehydratase compare
H281DRAFT_04763 +0.6 2.3 hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
H281DRAFT_05462 +0.6 1.8 hypothetical protein compare
H281DRAFT_01680 +0.6 1.9 Crotonobetainyl-CoA:carnitine CoA-transferase CaiB compare
H281DRAFT_00348 +0.6 1.0 membrane fusion protein, multidrug efflux system compare
H281DRAFT_01052 +0.6 1.3 hypothetical protein compare
H281DRAFT_00370 +0.6 1.7 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase (EC 1.2.1.77) compare
H281DRAFT_01654 +0.6 1.8 3-phenylpropionate/cinnamic acid dioxygenase, small subunit compare
H281DRAFT_02592 +0.6 0.7 fumarase, class II compare
H281DRAFT_06220 +0.6 1.3 hypothetical protein compare
H281DRAFT_00375 +0.6 1.1 benzoyl-CoA oxygenase, component A compare
H281DRAFT_02634 +0.6 2.5 Beta-galactosidase compare
H281DRAFT_00885 +0.6 3.5 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ compare
H281DRAFT_04535 +0.6 1.2 quaternary ammonium compound-resistance protein SugE compare
H281DRAFT_03537 +0.6 1.3 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_00966 +0.6 1.8 uroporphyrinogen-III C-methyltransferase (EC 2.1.1.107) compare
H281DRAFT_03376 +0.6 2.5 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase compare
H281DRAFT_00919 +0.6 1.3 hypothetical protein compare
H281DRAFT_00654 +0.6 1.7 putative spermidine/putrescine transport system substrate-binding protein compare
H281DRAFT_03009 +0.6 2.2 acetyl coenzyme A synthetase (ADP forming), alpha domain-containing protein compare
H281DRAFT_03716 +0.6 2.1 AraC family transcriptional regulator, transcriptional activator FtrA compare
H281DRAFT_03575 +0.6 1.3 hypothetical protein compare
H281DRAFT_00302 +0.6 2.5 Heat shock protein compare
H281DRAFT_05185 +0.6 0.8 hypothetical protein compare
H281DRAFT_02116 +0.6 1.1 transcriptional regulator, LacI family compare
H281DRAFT_01287 +0.6 0.8 mxaK protein compare
H281DRAFT_04798 +0.6 2.1 Predicted xylanase/chitin deacetylase compare
H281DRAFT_01061 +0.6 1.9 hypothetical protein compare
H281DRAFT_03400 +0.6 1.5 cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein (EC 1.10.3.10) compare
H281DRAFT_05012 +0.6 0.8 hypothetical protein compare
H281DRAFT_03446 +0.6 2.8 Alpha 1,4-glycosyltransferase conserved region compare
H281DRAFT_01243 +0.6 1.0 lipoprotein, YaeC family compare
H281DRAFT_04887 +0.6 1.0 hypothetical protein compare
H281DRAFT_01353 +0.6 2.6 Predicted dithiol-disulfide oxidoreductase, DUF899 family compare
H281DRAFT_00130 +0.6 1.5 Predicted secreted protein compare
H281DRAFT_05974 +0.6 0.9 carbon-monoxide dehydrogenase medium subunit compare
H281DRAFT_03263 +0.5 2.4 Predicted arabinose efflux permease, MFS family compare
H281DRAFT_06163 +0.5 0.8 hypothetical protein compare
H281DRAFT_03268 +0.5 1.5 diguanylate cyclase/phosphodiesterase compare
H281DRAFT_03151 +0.5 1.8 hypothetical protein compare
H281DRAFT_00310 +0.5 1.2 UPF0176 protein compare
H281DRAFT_02490 +0.5 1.6 amidase compare
H281DRAFT_05775 +0.5 2.7 flagellar biosynthetic protein FliQ compare
H281DRAFT_06056 +0.5 2.7 histidine kinase (EC 2.7.13.3) compare
H281DRAFT_00086 +0.5 1.4 urease subunit beta compare
H281DRAFT_06329 +0.5 1.9 transcriptional regulator, AraC family compare
H281DRAFT_04855 +0.5 0.9 hypothetical protein compare
H281DRAFT_05632 +0.5 0.7 hypothetical protein compare
H281DRAFT_01330 +0.5 1.7 pyrroloquinoline quinone biosynthesis protein B compare
H281DRAFT_03322 +0.5 2.3 hypothetical protein compare
H281DRAFT_01181 +0.5 2.0 Acyl-CoA synthetase (NDP forming) compare
H281DRAFT_04050 +0.5 1.3 beta-aspartyl-peptidase (threonine type) compare
H281DRAFT_05021 +0.5 1.0 Response regulator compare
H281DRAFT_03096 +0.5 1.7 drug resistance transporter, EmrB/QacA subfamily compare
H281DRAFT_05915 +0.5 1.1 hypothetical protein compare
H281DRAFT_02751 +0.5 2.1 carboxylesterase compare
H281DRAFT_04342 +0.5 2.0 Ferredoxin subunit of nitrite reductase or a ring-hydroxylating dioxygenase compare
H281DRAFT_04759 +0.5 1.1 hypothetical protein compare
H281DRAFT_01207 +0.5 1.7 SPFH domain, Band 7 family protein compare
H281DRAFT_03367 +0.5 1.8 electron transfer flavoprotein alpha subunit apoprotein compare
H281DRAFT_01310 +0.5 1.2 ribulose-5-phosphate 3-epimerase (EC 5.1.3.1) compare
H281DRAFT_05869 +0.5 1.2 2-iminobutanoate/2-iminopropanoate deaminase compare
H281DRAFT_02078 +0.5 1.7 protein of unknown function (DUF1840) compare
H281DRAFT_03450 +0.5 1.9 ABC-2 type transport system permease protein compare
H281DRAFT_03331 +0.5 1.5 membrane-associated protein compare
H281DRAFT_06272 +0.5 0.7 uncharacterized protein compare
H281DRAFT_02944 +0.5 1.3 aldehyde dehydrogenase (NAD+) compare
H281DRAFT_00986 +0.5 2.1 2-Methylisocitrate lyase, PEP mutase family compare
H281DRAFT_02718 +0.5 1.5 Glycine/D-amino acid oxidase (deaminating) compare
H281DRAFT_00992 +0.5 1.1 Glycine/D-amino acid oxidase (deaminating) compare
H281DRAFT_02058 +0.5 0.7 cholesterol transport system auxiliary component compare
H281DRAFT_04051 +0.5 1.3 transcriptional regulator, RpiR family compare
H281DRAFT_03796 +0.5 1.4 protein of unknown function (DUF4148) compare
H281DRAFT_02596 +0.5 1.8 methyl-accepting chemotaxis sensory transducer with TarH sensor compare


Specific Phenotypes

None in this experiment

For Paraburkholderia bryophila 376MFSha3.1 in carbon source experiments

For carbon source Gallic Acid across organisms