Experiment set6IT019 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with sodium carbonate monohydrate 0.0125 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_5069 -5.9 -4.1 putative Cytochrome bd2, subunit II compare
Pf6N2E2_5006 -5.3 -7.3 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_3617 -5.1 -3.5 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_5068 -4.4 -12.6 putative Cytochrome bd2, subunit I compare
Pf6N2E2_3611 -4.0 -2.7 HflC protein compare
Pf6N2E2_4678 -4.0 -2.1 hypothetical protein compare
Pf6N2E2_5178 -4.0 -2.7 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_3658 -3.7 -7.0 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_5430 -3.6 -10.6 Transglycosylase, Slt family compare
Pf6N2E2_3941 -3.5 -3.4 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_2753 -3.4 -2.3 HtrA protease/chaperone protein compare
Pf6N2E2_3198 -3.3 -2.2 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_5671 -3.2 -3.8 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_3665 -3.1 -1.6 serine/threonine protein kinase compare
Pf6N2E2_2274 -3.1 -6.5 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_5242 -3.0 -2.9 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_5544 -3.0 -8.6 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_2320 -3.0 -3.5 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_3661 -2.9 -3.5 hypothetical protein compare
Pf6N2E2_4369 -2.9 -2.8 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_3659 -2.9 -5.6 Protein fixF compare
Pf6N2E2_3612 -2.8 -2.7 HflK protein compare
Pf6N2E2_3303 -2.7 -5.1 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_3663 -2.7 -7.9 Glycosyl transferase compare
Pf6N2E2_4762 -2.5 -3.1 Biotin synthesis protein BioH compare
Pf6N2E2_5150 -2.4 -6.0 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_1056 -2.4 -1.6 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_4372 -2.4 -5.6 FIG00460773: hypothetical protein compare
Pf6N2E2_3301 -2.4 -11.4 ABC transporter, ATP-binding protein compare
Pf6N2E2_6057 -2.3 -3.8 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_5316 -2.3 -2.7 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_2473 -2.3 -2.0 Major outer membrane lipoprotein I compare
Pf6N2E2_5705 -2.2 -3.0 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_6140 -2.2 -1.6 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_4153 -2.2 -1.4 Sensory box histidine kinase compare
Pf6N2E2_5929 -2.2 -6.2 FIG00954461: hypothetical protein compare
Pf6N2E2_2507 -2.1 -6.0 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_5523 -2.1 -4.1 Small-conductance mechanosensitive channel compare
Pf6N2E2_5103 -2.1 -2.0 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_2574 -2.1 -2.0 Flagellar synthesis regulator FleN compare
Pf6N2E2_6164 -2.1 -1.8 tRNA-Val-TAC compare
Pf6N2E2_145 -2.1 -8.9 putative exported protein compare
Pf6N2E2_4159 -2.1 -3.4 Cytochrome c4 compare
Pf6N2E2_2510 -2.1 -4.6 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_144 -2.1 -13.5 Uncharacterized protein YtfM precursor compare
Pf6N2E2_4585 -2.1 -10.6 Cell division protein FtsX compare
Pf6N2E2_4584 -2.0 -3.3 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_5727 -1.9 -5.4 FIG00955360: hypothetical protein compare
Pf6N2E2_2506 -1.9 -10.9 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_3607 -1.9 -7.4 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_5338 -1.9 -6.5 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_3095 -1.9 -1.6 hypothetical protein compare
Pf6N2E2_2189 -1.9 -5.1 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_3285 -1.9 -3.8 Rod shape-determining protein MreD compare
Pf6N2E2_5155 -1.8 -3.2 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_2318 -1.8 -5.8 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_2317 -1.8 -3.5 Putative analog of CcoH, COG3198 compare
Pf6N2E2_5739 -1.8 -1.6 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_5014 -1.7 -1.5 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_4205 -1.6 -4.0 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_4071 -1.6 -4.3 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_5339 -1.6 -5.3 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_2413 -1.6 -2.6 FIG074102: hypothetical protein compare
Pf6N2E2_2218 -1.6 -3.5 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_2825 -1.6 -3.6 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_3656 -1.6 -4.9 Probable transcription regulator Mig-14 compare
Pf6N2E2_4759 -1.6 -9.0 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_3258 -1.5 -3.6 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_4204 -1.5 -1.8 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_3664 -1.5 -5.7 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_2384 -1.5 -3.9 CmpX compare
Pf6N2E2_74 -1.5 -2.9 DedD protein compare
Pf6N2E2_1673 -1.5 -1.9 Transcriptional regulator, TetR family compare
Pf6N2E2_2509 -1.5 -1.9 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_2264 -1.5 -3.5 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_1315 -1.5 -1.1 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) compare
Pf6N2E2_156 -1.5 -2.3 Carbon storage regulator compare
Pf6N2E2_5243 -1.4 -1.7 hypothetical protein compare
Pf6N2E2_3786 -1.4 -3.1 Twin-arginine translocation protein TatC compare
Pf6N2E2_2646 -1.4 -2.0 FIG00953416: hypothetical protein compare
Pf6N2E2_664 -1.4 -2.4 Acetoin catabolism protein X compare
Pf6N2E2_3655 -1.4 -8.6 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_6045 -1.4 -1.4 hypothetical protein compare
Pf6N2E2_4763 -1.4 -6.6 Biotin synthesis protein BioC compare
Pf6N2E2_2586 -1.4 -1.9 Hpt domain protein compare
Pf6N2E2_5292 -1.4 -5.6 Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) compare
Pf6N2E2_5956 -1.3 -4.9 FIG004453: protein YceG like compare
Pf6N2E2_4464 -1.3 -2.1 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like compare
Pf6N2E2_5944 -1.3 -4.8 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) compare
Pf6N2E2_2126 -1.3 -4.6 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_2707 -1.3 -3.2 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) compare
Pf6N2E2_5156 -1.3 -2.0 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_5406 -1.3 -2.3 FIG00958224: hypothetical protein compare
Pf6N2E2_1288 -1.2 -1.7 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf6N2E2_5081 -1.2 -3.4 hypothetical protein compare
Pf6N2E2_5993 -1.2 -2.6 FIG00957412: hypothetical protein compare
Pf6N2E2_1632 -1.2 -3.6 Iron(III) dicitrate transport system, periplasmic iron-binding protein FecB (TC 3.A.1.14.1) compare
Pf6N2E2_2278 -1.2 -8.2 Transcription-repair coupling factor compare
Pf6N2E2_4764 -1.2 -3.4 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_4761 -1.2 -5.6 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_5668 -1.2 -3.2 Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) compare
Pf6N2E2_2311 -1.2 -5.2 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_1081 -1.2 -1.7 probable membrane protein YPO3302 compare
Pf6N2E2_1633 -1.2 -2.1 Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) compare
Pf6N2E2_5494 -1.1 -3.6 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_4614 -1.1 -3.0 twitching motility protein PilH compare
Pf6N2E2_75 -1.1 -2.2 Colicin V production protein compare
Pf6N2E2_4611 -1.1 -2.9 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_2896 -1.1 -3.4 DNA-binding response regulator GltR, controls specific porins for the entry of glucose compare
Pf6N2E2_2827 -1.1 -1.4 hypothetical protein compare
Pf6N2E2_2508 -1.1 -2.9 hypothetical protein compare
Pf6N2E2_3260 -1.1 -3.1 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_2310 -1.1 -6.2 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_4206 -1.1 -1.0 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_1683 -1.1 -2.3 Fe2+-dicitrate sensor, membrane component compare
Pf6N2E2_1656 -1.1 -1.5 hypothetical protein compare
Pf6N2E2_6047 -1.1 -1.6 hypothetical protein compare
Pf6N2E2_4057 -1.1 -1.1 lipoprotein, putative compare
Pf6N2E2_5882 -1.1 -3.8 Putative membrane protein compare
Pf6N2E2_5703 -1.1 -3.3 outer membrane protein H1 compare
Pf6N2E2_309 -1.1 -1.7 FIG00957702: hypothetical protein compare
Pf6N2E2_3792 -1.1 -4.2 Glucans biosynthesis protein G precursor compare
Pf6N2E2_2513 -1.1 -3.0 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_5342 -1.1 -1.7 21 kDa hemolysin precursor compare
Pf6N2E2_1634 -1.1 -3.7 ABC-type Fe3+-siderophore transport system, permease component compare
Pf6N2E2_1065 -1.1 -2.1 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_3477 -1.1 -1.7 2-Oxobutyrate oxidase, putative compare
Pf6N2E2_3521 -1.1 -5.5 Sensor histidine kinase/response regulator compare
Pf6N2E2_2938 -1.0 -3.2 Outer membrane lipoprotein compare
Pf6N2E2_4364 -1.0 -2.4 Protein YicC compare
Pf6N2E2_2192 -1.0 -5.3 3-methylcrotonyl-CoA carboxylase, beta subunit (EC 6.4.1.4) (from data) compare
Pf6N2E2_829 -1.0 -2.5 TesB-like acyl-CoA thioesterase 1 compare
Pf6N2E2_2755 -1.0 -0.8 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_2822 -1.0 -4.7 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_5337 -1.0 -2.5 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_4803 -1.0 -1.2 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_5425 -1.0 -1.2 hypothetical protein compare
Pf6N2E2_384 -1.0 -1.3 Glycine cleavage system transcriptional activator compare
Pf6N2E2_4556 -1.0 -2.0 FIG00953078: hypothetical protein compare
Pf6N2E2_1508 -1.0 -2.6 DNA-binding response regulator compare
Pf6N2E2_1625 -1.0 -2.2 Ferric reductase (1.6.99.14) compare
Pf6N2E2_4477 -1.0 -3.0 Z-ring-associated protein ZapA compare
Pf6N2E2_3081 -1.0 -4.2 HesA/MoeB/ThiF family protein related to EC-YgdL compare
Pf6N2E2_5001 -1.0 -1.7 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_3839 -1.0 -1.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_3432 -1.0 -3.1 Ais protein, putative compare
Pf6N2E2_2999 -1.0 -2.3 probable tail fiber assembly protein compare
Pf6N2E2_6063 -1.0 -4.5 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_3834 -1.0 -2.6 Lipoprotein NlpD compare
Pf6N2E2_4889 -1.0 -3.9 Putative transport protein compare
Pf6N2E2_3529 -0.9 -1.7 Toxin A compare
Pf6N2E2_2794 -0.9 -1.6 putative membrane protein compare
Pf6N2E2_4279 -0.9 -5.8 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_3505 -0.9 -0.5 Translation initiation factor SUI1-related protein compare
Pf6N2E2_6064 -0.9 -3.5 2-methylaconitate isomerase compare
Pf6N2E2_4276 -0.9 -3.0 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_2447 -0.9 -3.2 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_1248 -0.9 -2.0 MutT/nudix family protein compare
Pf6N2E2_4638 -0.9 -1.8 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_4084 -0.9 -4.1 Transcriptional regulator compare
Pf6N2E2_827 -0.9 -2.0 probable dioxygenase compare
Pf6N2E2_3252 -0.9 -3.9 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_3791 -0.9 -4.5 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_2985 -0.9 -2.4 Diacylglycerol kinase (EC 2.7.1.107) compare
Pf6N2E2_5520 -0.9 -3.4 Sensory box histidine kinase compare
Pf6N2E2_170 -0.9 -1.7 lipoprotein, putative compare
Pf6N2E2_2201 -0.9 -2.5 Transmembrane regulator protein PrtR compare
Pf6N2E2_4187 -0.9 -2.5 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_2708 -0.9 -3.2 Lactam utilization protein LamB compare
Pf6N2E2_2007 -0.9 -2.4 Error-prone, lesion bypass DNA polymerase V (UmuC) compare
Pf6N2E2_737 -0.9 -1.6 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) compare
Pf6N2E2_2477 -0.9 -1.3 ABC transporter ATP-binding protein YvcR compare
Pf6N2E2_1156 -0.9 -2.2 hypothetical protein compare
Pf6N2E2_3833 -0.9 -3.2 hypothetical protein compare
Pf6N2E2_5291 -0.9 -7.0 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf6N2E2_2261 -0.8 -3.6 VacJ-like lipoprotein precursor compare
Pf6N2E2_2674 -0.8 -0.9 FIG00953856: hypothetical protein compare
Pf6N2E2_2716 -0.8 -2.2 FIG00954793: hypothetical protein compare
Pf6N2E2_5647 -0.8 -2.6 Transcriptional regulator, TetR family compare
Pf6N2E2_5771 -0.8 -4.2 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) compare
Pf6N2E2_1099 -0.8 -1.1 Hypothetical protein GlcG in glycolate utilization operon compare
Pf6N2E2_4987 -0.8 -1.0 MaoC-like domain protein compare
Pf6N2E2_2194 -0.8 -3.7 3-methylcrotonyl-CoA carboxylase, alpha (biotin-containing) subunit (EC 6.4.1.4) (from data) compare
Pf6N2E2_3261 -0.8 -3.0 hypothetical protein compare
Pf6N2E2_4579 -0.8 -1.1 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_2080 -0.8 -1.1 hypothetical protein compare
Pf6N2E2_4362 -0.8 -1.7 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_423 -0.8 -1.8 Putative phosphatase YfbT compare
Pf6N2E2_3039 -0.8 -2.4 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_1626 -0.8 -3.4 Putative ATP-binding component of a transport system compare
Pf6N2E2_292 -0.8 -4.2 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Pf6N2E2_4631 -0.8 -3.5 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf6N2E2_2527 -0.8 -2.4 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_1720 -0.8 -2.1 hypothetical protein compare
Pf6N2E2_1966 -0.8 -1.1 SAM-dependent methyltransferases compare
Pf6N2E2_2313 -0.8 -2.0 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_189 -0.8 -2.2 regulatory protein, putative compare
Pf6N2E2_3338 -0.8 -0.8 1-phosphofructokinase (EC 2.7.1.56) compare
Pf6N2E2_3782 -0.8 -2.2 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_2397 -0.8 -1.2 Two-component system response regulator QseB compare


Specific Phenotypes

For 2 genes in this experiment

For stress sodium carbonate monohydrate in Pseudomonas fluorescens FW300-N2E2

For stress sodium carbonate monohydrate across organisms