Experiment set6IT018 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

Phenylacetic acid carbon source

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_05852 +3.9 27.8 transcriptional regulator, TetR family compare
H281DRAFT_00885 +2.8 13.1 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ compare
H281DRAFT_04391 +2.7 24.5 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_04390 +2.5 21.6 ATP-binding cassette, subfamily B compare
H281DRAFT_01914 +2.5 18.6 Predicted PurR-regulated permease PerM compare
H281DRAFT_04270 +2.1 16.7 L-glutamate-binding protein /L-aspartate-binding protein compare
H281DRAFT_04552 +2.1 11.5 acetolactate synthase, small subunit compare
H281DRAFT_04269 +2.0 17.8 L-glutamate ABC transporter membrane protein /L-aspartate ABC transporter membrane protein compare
H281DRAFT_00927 +2.0 7.5 UPF0755 protein compare
H281DRAFT_04170 +2.0 15.1 multidrug efflux pump compare
H281DRAFT_04713 +2.0 15.1 membrane-associated protein compare
H281DRAFT_06008 +2.0 15.6 RNA polymerase, sigma 70 subunit, RpoD compare
H281DRAFT_05812 +2.0 10.9 biotin-dependent carboxylase uncharacterized domain-containing protein compare
H281DRAFT_04171 +1.9 12.8 membrane fusion protein, multidrug efflux system compare
H281DRAFT_04268 +1.9 15.8 L-glutamate ABC transporter membrane protein /L-aspartate ABC transporter membrane protein compare
H281DRAFT_05813 +1.8 11.2 sensor histidine kinase inhibitor, KipI family compare
H281DRAFT_00468 +1.8 9.4 dihydrolipoamide dehydrogenase compare
H281DRAFT_04229 +1.8 11.1 glycerol kinase compare
H281DRAFT_00470 +1.7 12.4 murein-DD-endopeptidase. Serine peptidase. MEROPS family S11 compare
H281DRAFT_04400 +1.7 14.9 membrane-bound lytic murein transglycosylase D compare
H281DRAFT_04169 +1.7 10.2 outer membrane protein, multidrug efflux system compare
H281DRAFT_00291 +1.6 4.8 Cytochrome c553 compare
H281DRAFT_04601 +1.6 11.1 hypothetical protein compare
H281DRAFT_05810 +1.6 10.0 Uncharacterized membrane protein compare
H281DRAFT_04064 +1.6 7.8 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
H281DRAFT_05809 +1.6 10.6 Uncharacterized membrane protein compare
H281DRAFT_00808 +1.5 8.7 Uncharacterized conserved protein, contains Mth938-like domain compare
H281DRAFT_04228 +1.5 10.7 homodimeric glycerol 3-phosphate dehydrogenase (quinone) compare
H281DRAFT_03915 +1.5 4.4 UDPglucose 6-dehydrogenase compare
H281DRAFT_04837 +1.4 10.8 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family compare
H281DRAFT_00254 +1.4 11.9 DNA (cytosine-5)-methyltransferase 1 compare
H281DRAFT_04220 +1.4 10.2 Cytochrome c, mono- and diheme variants compare
H281DRAFT_05816 +1.4 11.6 soluble lytic murein transglycosylase compare
H281DRAFT_04219 +1.4 10.9 Cytochrome c553 compare
H281DRAFT_05327 +1.4 10.3 Outer membrane protein (porin) compare
H281DRAFT_00290 +1.3 3.4 Cytochrome c553 compare
H281DRAFT_05687 +1.3 12.1 amino acid/polyamine/organocation transporter, APC superfamily compare
H281DRAFT_06266 +1.3 5.1 putative (di)nucleoside polyphosphate hydrolase compare
H281DRAFT_04008 +1.2 3.4 RNAse PH compare
H281DRAFT_05851 +1.2 8.9 Protein N-acetyltransferase, RimJ/RimL family compare
H281DRAFT_01994 +1.2 9.2 cytochrome c oxidase subunit 2 compare
H281DRAFT_01987 +1.1 10.0 Cytochrome oxidase Cu insertion factor, SCO1/SenC/PrrC family compare
H281DRAFT_01021 +1.1 4.2 Nitroreductase compare
H281DRAFT_01984 +1.1 9.3 protein SCO1/2 compare
H281DRAFT_04386 +1.1 6.4 hypothetical protein compare
H281DRAFT_00518 +1.1 2.5 Putative negative regulator of RcsB-dependent stress response compare
H281DRAFT_03131 +1.1 8.6 proton-dependent oligopeptide transporter, POT family compare
H281DRAFT_02008 +1.1 5.4 phosphocarrier protein compare
H281DRAFT_01748 +1.1 6.3 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
H281DRAFT_01923 +1.1 3.5 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) compare
H281DRAFT_04673 +1.1 3.7 transcriptional regulator, LysR family compare
H281DRAFT_02007 +1.1 8.7 phosphoenolpyruvate--protein phosphotransferase compare
H281DRAFT_00074 +1.1 3.9 UDP-galactose 4-epimerase compare
H281DRAFT_04880 +1.0 2.4 PRC-barrel domain-containing protein compare
H281DRAFT_00075 +1.0 3.2 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_02600 +1.0 2.3 Undecaprenyl-diphosphatase (EC 3.6.1.27) compare
H281DRAFT_04924 +1.0 4.5 iron complex outermembrane recepter protein compare
H281DRAFT_04406 +1.0 4.2 putative RNA-binding protein, YhbY family compare
H281DRAFT_04922 +1.0 4.5 iron complex transport system permease protein compare
H281DRAFT_01095 +1.0 1.2 Glyoxylase, beta-lactamase superfamily II compare
H281DRAFT_01675 +1.0 4.3 PAS/PAC sensor hybrid histidine kinase (EC 2.7.13.3) compare
H281DRAFT_00888 +0.9 4.6 phytoene synthase compare
H281DRAFT_04549 +0.9 2.6 Protein of unknown function (DUF3619) compare
H281DRAFT_04026 +0.9 4.2 3-octaprenyl-4hydroxybenzoate decarboxylase compare
H281DRAFT_05803 +0.9 3.8 dipeptide transport system permease protein compare
H281DRAFT_02224 +0.9 3.3 rod shape-determining protein MreC compare
H281DRAFT_00339 +0.9 2.7 Uncharacterized membrane protein compare
H281DRAFT_00504 +0.9 6.1 hypothetical protein compare
H281DRAFT_02148 +0.9 4.3 cytochrome c compare
H281DRAFT_05805 +0.9 5.1 dipeptide transport system ATP-binding protein compare
H281DRAFT_02054 +0.9 6.3 penicillin-binding protein 6. Serine peptidase. MEROPS family S11 compare
H281DRAFT_06177 +0.9 3.6 hypothetical protein compare
H281DRAFT_03822 +0.9 3.1 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_04004 +0.9 4.8 (p)ppGpp synthetase I, SpoT/RelA compare
H281DRAFT_05835 +0.9 5.0 3-hydroxyisobutyrate dehydrogenase compare
H281DRAFT_05776 +0.9 4.1 flagellar biosynthetic protein FliP compare
H281DRAFT_02910 +0.9 2.2 conserved hypothetical protein compare
H281DRAFT_02405 +0.9 6.6 amino acid/amide ABC transporter substrate-binding protein, HAAT family compare
H281DRAFT_05345 +0.9 3.3 Fur family transcriptional regulator, zinc uptake regulator compare
H281DRAFT_06253 +0.9 6.4 cell division protein ZapD compare
H281DRAFT_01246 +0.8 1.6 hypothetical protein compare
H281DRAFT_04544 +0.8 1.4 diacylglycerol kinase (ATP) compare
H281DRAFT_00819 +0.8 1.7 competence protein ComEA compare
H281DRAFT_05351 +0.8 3.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
H281DRAFT_05737 +0.8 1.8 flagellar transcriptional activator FlhD compare
H281DRAFT_05998 +0.8 2.8 hypothetical protein compare
H281DRAFT_04474 +0.8 3.8 RND family efflux transporter, MFP subunit compare
H281DRAFT_04954 +0.8 3.7 Threonine/homoserine efflux transporter RhtA compare
H281DRAFT_01993 +0.8 6.2 cytochrome c oxidase subunit 1 compare
H281DRAFT_04476 +0.8 4.4 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
H281DRAFT_03734 +0.8 3.4 carbohydrate ABC transporter ATP-binding protein, CUT1 family compare
H281DRAFT_05967 +0.8 1.8 Cupredoxin-like domain-containing protein compare
H281DRAFT_04857 +0.8 2.1 hypothetical protein compare
H281DRAFT_04604 +0.8 5.9 Protein of unknown function (DUF2863) compare
H281DRAFT_05830 +0.8 1.8 hypothetical protein compare
H281DRAFT_04475 +0.8 5.0 Uncharacterized membrane protein YccC compare
H281DRAFT_05248 +0.8 1.6 hypothetical protein compare
H281DRAFT_00562 +0.8 4.9 microcin C transport system permease protein compare
H281DRAFT_05879 +0.8 2.4 DNA-binding transcriptional regulator, MarR family compare
H281DRAFT_04440 +0.8 2.7 Predicted NTP pyrophosphohydrolase, NUDIX family compare
H281DRAFT_05707 +0.8 3.3 thiol:disulfide interchange protein DsbC compare
H281DRAFT_00523 +0.8 1.7 protease FtsH subunit HflK compare
H281DRAFT_05521 +0.8 2.6 3-hydroxyacyl-CoA dehydrogenase compare
H281DRAFT_03886 +0.8 5.6 Uncharacterized membrane protein YccC compare
H281DRAFT_06573 +0.8 3.0 putative addiction module antidote protein, CC2985 family compare
H281DRAFT_04781 +0.8 1.5 putative colanic acid biosynthesis acetyltransferase WcaF compare
H281DRAFT_04061 +0.8 6.0 amino acid/amide ABC transporter membrane protein 2, HAAT family compare
H281DRAFT_02559 +0.8 2.6 hypothetical protein compare
H281DRAFT_06091 +0.8 3.6 Protein required for attachment to host cells compare
H281DRAFT_06549 +0.7 1.9 transcriptional regulator, AraC family compare
H281DRAFT_00722 +0.7 1.6 transcriptional regulator, Crp/Fnr family compare
H281DRAFT_01511 +0.7 2.9 transcriptional regulator, GntR family compare
H281DRAFT_02985 +0.7 2.0 copper chaperone compare
H281DRAFT_05392 +0.7 4.1 hypothetical protein compare
H281DRAFT_02003 +0.7 3.1 Rhodanese-related sulfurtransferase compare
H281DRAFT_03817 +0.7 3.3 drug resistance transporter, EmrB/QacA subfamily compare
H281DRAFT_02149 +0.7 4.1 Osmotically-inducible protein OsmY, contains BON domain compare
H281DRAFT_03252 +0.7 3.0 2,4-dihydroxyhept-2-enedioate aldolase (EC 4.1.2.-) compare
H281DRAFT_00777 +0.7 2.0 SOS-response transcriptional repressor, LexA compare
H281DRAFT_03835 +0.7 1.7 NitT/TauT family transport system permease protein compare
H281DRAFT_06281 +0.7 4.5 MJ0042 family finger-like domain-containing protein compare
H281DRAFT_03884 +0.7 2.3 RND family efflux transporter, MFP subunit compare
H281DRAFT_06474 +0.7 2.2 amino acid ABC transporter membrane protein 1, PAAT family compare
H281DRAFT_05778 +0.7 1.8 flagellar motor switch protein FliN/FliY compare
H281DRAFT_00051 +0.7 1.4 hypothetical protein compare
H281DRAFT_01257 +0.7 1.9 Catechol 2,3-dioxygenase compare
H281DRAFT_00168 +0.7 2.4 carbohydrate ABC transporter membrane protein 2, CUT1 family compare
H281DRAFT_05231 +0.7 3.3 2-keto-4-pentenoate hydratase compare
H281DRAFT_00048 +0.7 3.4 hypothetical protein compare
H281DRAFT_00690 +0.7 1.9 NADPH:quinone reductase compare
H281DRAFT_05910 +0.7 1.2 hypothetical protein compare
H281DRAFT_00940 +0.7 1.0 psiF repeat-containing protein compare
H281DRAFT_04820 +0.7 3.2 Bis(5'nucleosyl)-tetraphosphatase, ApaH compare
H281DRAFT_04431 +0.7 3.3 Membrane-bound metallopeptidase compare
H281DRAFT_06003 +0.7 2.5 Pimeloyl-ACP methyl ester carboxylesterase compare
H281DRAFT_05097 +0.7 3.3 putative transposase compare
H281DRAFT_04773 +0.7 3.3 Undecaprenyl-phosphate glucose phosphotransferase compare
H281DRAFT_02698 +0.7 2.1 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_02784 +0.7 1.2 Uncharacterized conserved protein YecE, DUF72 family compare
H281DRAFT_03153 +0.7 1.9 two component transcriptional regulator, LuxR family compare
H281DRAFT_03879 +0.7 2.5 xylose ABC transporter membrane protein compare
H281DRAFT_03246 +0.7 4.9 iron complex outermembrane recepter protein compare
H281DRAFT_04433 +0.7 2.4 Undecaprenyl-diphosphatase compare
H281DRAFT_00653 +0.7 3.9 Enoyl-CoA hydratase/carnithine racemase compare
H281DRAFT_02170 +0.7 1.4 Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family compare
H281DRAFT_05811 +0.7 2.5 UPF0271 protein compare
H281DRAFT_02575 +0.7 1.8 D-threo-aldose 1-dehydrogenase compare
H281DRAFT_01988 +0.7 4.6 Cytochrome oxidase assembly protein ShyY1 compare
H281DRAFT_00896 +0.7 1.4 ATP-dependent Clp protease proteolytic subunit ClpP compare
H281DRAFT_00561 +0.7 4.0 microcin C transport system permease protein compare
H281DRAFT_02753 +0.7 1.9 Predicted dehydrogenase compare
H281DRAFT_01360 +0.7 3.1 transcriptional regulator, TetR family compare
H281DRAFT_00849 +0.6 3.5 conserved hypothetical protein compare
H281DRAFT_05882 +0.6 2.0 amino acid ABC transporter substrate-binding protein, PAAT family compare
H281DRAFT_03047 +0.6 1.7 protein of unknown function (DUF4148) compare
H281DRAFT_05943 +0.6 2.0 Permease of the drug/metabolite transporter (DMT) superfamily compare
H281DRAFT_03743 +0.6 2.9 hypothetical protein compare
H281DRAFT_04250 +0.6 2.3 DNA-binding protein Fis compare
H281DRAFT_01749 +0.6 1.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
H281DRAFT_02580 +0.6 1.4 SnoaL-like domain-containing protein compare
H281DRAFT_05802 +0.6 4.7 dipeptide transport system substrate-binding protein compare
H281DRAFT_05601 +0.6 2.1 hypothetical protein compare
H281DRAFT_04482 +0.6 2.6 NAD(P)H dehydrogenase (quinone) compare
H281DRAFT_05966 +0.6 1.8 transcriptional regulator, LysR family compare
H281DRAFT_04811 +0.6 4.6 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
H281DRAFT_04060 +0.6 3.8 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family compare
H281DRAFT_00902 +0.6 3.1 peptidyl-prolyl cis-trans isomerase D compare
H281DRAFT_00222 +0.6 4.2 amino acid ABC transporter membrane protein 2, PAAT family compare
H281DRAFT_03320 +0.6 1.2 Uncharacterized conserved protein compare
H281DRAFT_03501 +0.6 2.0 2-aminoethylphosphonate transport system permease protein compare
H281DRAFT_03638 +0.6 1.9 Cupin domain-containing protein compare
H281DRAFT_03273 +0.6 1.5 Uncharacterized membrane protein YqjE compare
H281DRAFT_00227 +0.6 1.8 two component transcriptional regulator, winged helix family compare
H281DRAFT_06011 +0.6 1.5 SSU ribosomal protein S21P compare
H281DRAFT_05632 +0.6 1.4 hypothetical protein compare
H281DRAFT_06190 +0.6 1.0 DNA-binding protein H-NS compare
H281DRAFT_05775 +0.6 4.2 flagellar biosynthetic protein FliQ compare
H281DRAFT_05806 +0.6 4.3 dipeptide transport system ATP-binding protein compare
H281DRAFT_03440 +0.6 1.8 PAP2 superfamily protein compare
H281DRAFT_05887 +0.6 1.4 carbohydrate ABC transporter ATP-binding protein, CUT1 family compare
H281DRAFT_05041 +0.6 1.2 RNA polymerase sigma-70 factor, ECF subfamily compare
H281DRAFT_05315 +0.6 1.0 5-dehydro-4-deoxy-D-glucarate aldolase (EC 4.1.2.20) compare
H281DRAFT_04869 +0.6 1.9 imidazolonepropionase compare
H281DRAFT_05398 +0.6 1.5 hypothetical protein compare
H281DRAFT_04218 +0.6 2.1 hypothetical protein compare
H281DRAFT_02957 +0.6 1.5 Predicted xylanase/chitin deacetylase compare
H281DRAFT_04115 +0.6 4.7 Regulator of sirC expression, contains transglutaminase-like and TPR domains compare
H281DRAFT_03576 +0.6 0.9 two-component system, chemotaxis family, response regulator CheY compare
H281DRAFT_04059 +0.6 3.2 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family compare
H281DRAFT_00315 +0.6 2.7 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_01990 +0.6 4.2 cytochrome c oxidase subunit 3 compare
H281DRAFT_03245 +0.6 3.2 Uncharacterized iron-regulated membrane protein compare
H281DRAFT_01729 +0.6 2.4 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_06354 +0.6 1.7 Sugar phosphate permease compare
H281DRAFT_01992 +0.6 3.6 cytochrome c oxidase assembly protein subunit 11 compare
H281DRAFT_02035 +0.6 4.8 hypothetical protein compare
H281DRAFT_02469 +0.6 2.5 membrane dipeptidase compare
H281DRAFT_05350 +0.6 1.6 Signal transduction histidine kinase compare
H281DRAFT_04586 +0.6 4.3 hypothetical protein compare
H281DRAFT_03636 +0.6 3.5 Phenylpropionate dioxygenase, large terminal subunit compare


Specific Phenotypes

For 29 genes in this experiment

For carbon source Phenylacetic acid in Paraburkholderia bryophila 376MFSha3.1

For carbon source Phenylacetic acid across organisms