Experiment set6IT017 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

L-Glutamic acid monopotassium salt monohydrate carbon source

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_02008 +3.3 21.7 phosphocarrier protein compare
H281DRAFT_05667 +2.4 19.4 serine protease DegQ compare
H281DRAFT_02007 +2.2 19.6 phosphoenolpyruvate--protein phosphotransferase compare
H281DRAFT_01632 +1.6 13.5 LuxR family transcriptional regulator, quorum-sensing transcription factor LasR compare
H281DRAFT_01633 +1.5 4.9 hypothetical protein compare
H281DRAFT_04359 +1.4 3.7 Glutaredoxin and related proteins compare
H281DRAFT_02404 +1.3 11.6 L-proline dehydrogenase /delta-1-pyrroline-5-carboxylate dehydrogenase compare
H281DRAFT_06056 +1.2 10.7 histidine kinase (EC 2.7.13.3) compare
H281DRAFT_01927 +1.1 9.7 RNA polymerase, sigma 54 subunit, RpoN/SigL compare
H281DRAFT_02611 +1.1 2.6 transcriptional regulator, RpiR family compare
H281DRAFT_04544 +1.0 1.7 diacylglycerol kinase (ATP) compare
H281DRAFT_04369 +1.0 3.9 Uncharacterized conserved protein YjbJ, UPF0337 family compare
H281DRAFT_00316 +0.9 6.7 ADP-heptose:LPS heptosyltransferase compare
H281DRAFT_06547 +0.9 2.0 RNA polymerase sigma-70 factor, ECF subfamily compare
H281DRAFT_06277 +0.9 3.5 hypothetical protein compare
H281DRAFT_03525 +0.9 3.6 cold-shock DNA-binding protein family compare
H281DRAFT_04368 +0.9 6.7 two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family compare
H281DRAFT_01021 +0.9 1.4 Nitroreductase compare
H281DRAFT_01417 +0.9 1.7 anti-sigma-28 factor, FlgM family compare
H281DRAFT_04179 +0.8 5.9 two-component system, OmpR family, sensor kinase compare
H281DRAFT_00254 +0.8 7.2 DNA (cytosine-5)-methyltransferase 1 compare
H281DRAFT_00852 +0.8 5.0 acetyl-CoA acetyltransferase compare
H281DRAFT_01480 +0.8 3.0 4-hydroxy-tetrahydrodipicolinate synthase compare
H281DRAFT_05563 +0.8 2.0 Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC compare
H281DRAFT_03159 +0.8 1.7 hypothetical protein compare
H281DRAFT_01321 +0.7 1.0 probable H4MPT-linked C1 transfer pathway protein compare
H281DRAFT_00240 +0.7 5.9 two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family compare
H281DRAFT_05544 +0.7 1.3 NitT/TauT family transport system permease protein compare
H281DRAFT_05892 +0.7 3.9 carbohydrate ABC transporter substrate-binding protein, CUT1 family compare
H281DRAFT_06157 +0.7 1.3 hypothetical protein compare
H281DRAFT_03278 +0.7 1.6 Threonine dehydrogenase compare
H281DRAFT_03396 +0.7 1.9 AraC-type DNA-binding protein compare
H281DRAFT_00488 +0.7 2.1 exonuclease RecJ compare
H281DRAFT_04768 +0.7 1.1 colanic acid biosynthesis protein WcaH compare
H281DRAFT_00147 +0.7 2.0 uncharacterized domain 1-containing protein compare
H281DRAFT_01679 +0.7 1.5 shikimate dehydrogenase (EC 1.1.1.25) compare
H281DRAFT_02768 +0.7 2.4 Phage-related lysozyme (muraminidase) compare
H281DRAFT_05225 +0.7 2.3 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_01701 +0.7 1.9 hypothetical protein compare
H281DRAFT_03328 +0.7 2.7 hypothetical protein compare
H281DRAFT_01819 +0.7 4.4 PAS domain S-box-containing protein compare
H281DRAFT_03996 +0.7 3.3 chorismate mutase (EC 5.4.99.5) compare
H281DRAFT_00236 +0.7 3.0 sigma54 specific transcriptional regulator, Fis family compare
H281DRAFT_03496 +0.7 1.9 hypothetical protein compare
H281DRAFT_01236 +0.7 3.0 Protein-tyrosine-phosphatase compare
H281DRAFT_03154 +0.6 2.4 two-component system, NarL family, sensor kinase compare
H281DRAFT_03341 +0.6 3.7 Predicted arabinose efflux permease, MFS family compare
H281DRAFT_05936 +0.6 2.4 hypothetical protein compare
H281DRAFT_04855 +0.6 1.5 hypothetical protein compare
H281DRAFT_05381 +0.6 1.6 phosphonoacetate hydrolase compare
H281DRAFT_00377 +0.6 1.9 N-carbamoyl-L-amino-acid hydrolase compare
H281DRAFT_03287 +0.6 2.1 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_06109 +0.6 1.8 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_02170 +0.6 1.0 Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family compare
H281DRAFT_00088 +0.6 2.6 amino acid ABC transporter substrate-binding protein, PAAT family compare
H281DRAFT_04404 +0.6 1.5 GreA/GreB family elongation factor compare
H281DRAFT_00487 +0.6 2.0 bacterial peptide chain release factor 2 (bRF-2) compare
H281DRAFT_00235 +0.6 2.2 hypothetical protein compare
H281DRAFT_06165 +0.6 1.3 hypothetical protein compare
H281DRAFT_03293 +0.6 2.6 Ferritin-like metal-binding protein YciE compare
H281DRAFT_03258 +0.6 1.3 5-carboxy-2-oxohept-3-enedioate decarboxylase HpaG1 subunit (EC 4.1.1.68) compare
H281DRAFT_03066 +0.6 1.5 transcriptional regulator, LysR family compare
H281DRAFT_03147 +0.6 1.6 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA compare
H281DRAFT_06276 +0.6 3.4 hypothetical protein compare
H281DRAFT_00050 +0.6 1.1 Uncharacterized conserved protein, DUF1330 family compare
H281DRAFT_04845 +0.6 4.9 dolichol-phosphate mannosyltransferase compare
H281DRAFT_02670 +0.6 0.9 transcriptional regulator, GntR family compare
H281DRAFT_05776 +0.6 1.8 flagellar biosynthetic protein FliP compare
H281DRAFT_01182 +0.6 2.6 SnoaL-like domain-containing protein compare
H281DRAFT_06041 +0.6 3.2 Tautomerase enzyme compare
H281DRAFT_02910 +0.6 1.7 conserved hypothetical protein compare
H281DRAFT_00255 +0.6 2.2 hypothetical protein compare
H281DRAFT_00861 +0.6 3.4 hypothetical protein compare
H281DRAFT_04941 +0.6 1.4 Uncharacterized conserved protein, Ntn-hydrolase superfamily compare
H281DRAFT_02816 +0.6 1.8 xanthine dehydrogenase YagT iron-sulfur-binding subunit compare
H281DRAFT_03371 +0.6 2.0 outer membrane protein, multidrug efflux system compare
H281DRAFT_03637 +0.6 2.4 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_03483 +0.6 3.6 Major Facilitator Superfamily protein compare
H281DRAFT_05893 +0.6 1.4 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_05632 +0.6 1.4 hypothetical protein compare
H281DRAFT_02813 +0.6 1.7 Uncharacterized protein conserved in bacteria compare
H281DRAFT_03292 +0.6 1.2 Mn-containing catalase compare
H281DRAFT_02626 +0.6 1.4 hypothetical protein compare
H281DRAFT_03058 +0.6 1.2 CheY chemotaxis protein or a CheY-like REC (receiver) domain compare
H281DRAFT_01899 +0.6 2.4 hypothetical protein compare
H281DRAFT_03127 +0.6 2.7 oligopeptide transport system permease protein compare
H281DRAFT_01943 +0.6 1.4 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) compare
H281DRAFT_05327 +0.6 3.8 Outer membrane protein (porin) compare
H281DRAFT_00680 +0.5 1.8 Glycosyltransferases involved in cell wall biogenesis compare
H281DRAFT_00378 +0.5 1.3 glutamate synthase (NADPH/NADH) small chain compare
H281DRAFT_03036 +0.5 2.0 hypothetical protein compare
H281DRAFT_06427 +0.5 1.3 Molecular chaperone IbpA, HSP20 family compare
H281DRAFT_03521 +0.5 1.6 hypothetical protein compare
H281DRAFT_06543 +0.5 1.8 cytochrome b561 compare
H281DRAFT_03710 +0.5 1.3 Nitrate/nitrite transporter NarK compare
H281DRAFT_00338 +0.5 1.7 Protein of unknown function (DUF2964) compare
H281DRAFT_04934 +0.5 1.1 Sensors of blue-light using FAD compare
H281DRAFT_05561 +0.5 3.1 transcriptional regulator, TetR family compare
H281DRAFT_03399 +0.5 1.9 cytochrome bd-I ubiquinol oxidase subunit 2 apoprotein (EC 1.10.3.10) compare
H281DRAFT_03220 +0.5 1.6 4-hydroxy-tetrahydrodipicolinate synthase compare
H281DRAFT_00717 +0.5 1.0 HTH-type transcriptional regulator / antitoxin HigA compare
H281DRAFT_05249 +0.5 2.2 hypothetical protein compare
H281DRAFT_00022 +0.5 2.6 Transposase IS66 family protein compare
H281DRAFT_03351 +0.5 1.9 transcriptional regulator, IclR family compare
H281DRAFT_04781 +0.5 1.1 putative colanic acid biosynthesis acetyltransferase WcaF compare
H281DRAFT_00379 +0.5 1.1 dihydroorotate oxidase B, catalytic subunit /dihydrouracil dehydrogenase (NAD+) /dihydropyrimidine dehydrogenase (NADP+) compare
H281DRAFT_00315 +0.5 2.5 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_02856 +0.5 1.4 Protein of unknown function (DUF1488) compare
H281DRAFT_05468 +0.5 1.1 Transposase Tn5 dimerisation domain-containing protein compare
H281DRAFT_01483 +0.5 1.7 hypothetical protein compare
H281DRAFT_03868 +0.5 2.3 transcriptional regulator, XRE family with cupin sensor compare
H281DRAFT_04779 +0.5 2.9 colanic acid biosynthesis glycosyl transferase WcaI compare
H281DRAFT_06459 +0.5 1.8 flagellar motor switch protein FliG compare
H281DRAFT_03781 +0.5 1.3 Parvulin-like peptidyl-prolyl isomerase compare
H281DRAFT_00753 +0.5 1.4 Protein of unknown function (DUF1488) compare
H281DRAFT_03080 +0.5 1.9 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_00888 +0.5 1.7 phytoene synthase compare
H281DRAFT_04585 +0.5 1.1 hypothetical protein compare
H281DRAFT_03638 +0.5 1.7 Cupin domain-containing protein compare
H281DRAFT_04706 +0.5 3.5 poly(A) polymerase compare
H281DRAFT_04758 +0.5 2.2 Predicted periplasmic or secreted lipoprotein compare
H281DRAFT_02351 +0.5 2.5 general secretion pathway protein H compare
H281DRAFT_02931 +0.5 3.2 Uncharacterized conserved protein YodC, DUF2158 family compare
H281DRAFT_03855 +0.5 1.1 Sugar phosphate isomerase/epimerase compare
H281DRAFT_04901 +0.5 2.3 microcin C transport system permease protein compare
H281DRAFT_01372 +0.5 1.1 protocatechuate 4,5-dioxygenase alpha subunit (EC 1.13.11.8) compare
H281DRAFT_00023 +0.5 1.5 Glutathione S-transferase compare
H281DRAFT_05905 +0.5 1.6 hypothetical protein compare
H281DRAFT_05762 +0.5 1.8 flagellar basal-body rod protein FlgB compare
H281DRAFT_04538 +0.5 1.3 hemoglobin compare
H281DRAFT_03796 +0.5 1.8 protein of unknown function (DUF4148) compare
H281DRAFT_06583 +0.5 1.6 2-haloacid dehalogenase compare
H281DRAFT_04999 +0.5 1.6 type III secretion protein HrpB7 compare
H281DRAFT_01246 +0.5 0.9 hypothetical protein compare
H281DRAFT_01028 +0.5 0.9 peptide/nickel transport system permease protein compare
H281DRAFT_00566 +0.5 2.7 hypothetical protein compare
H281DRAFT_01729 +0.5 1.9 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_00419 +0.5 0.8 transcriptional regulator, LacI family compare
H281DRAFT_00976 +0.5 1.5 LysR family transcriptional regulator, glycine cleavage system transcriptional activator compare
H281DRAFT_05963 +0.5 3.1 transcriptional regulator, IclR family compare
H281DRAFT_00706 +0.5 0.9 outer membrane protein compare
H281DRAFT_03519 +0.5 2.3 hypothetical protein compare
H281DRAFT_03824 +0.5 2.5 zinc transporter compare
H281DRAFT_02097 +0.5 1.5 biotin synthase compare
H281DRAFT_02349 +0.5 2.8 general secretion pathway protein J compare
H281DRAFT_04787 +0.5 1.3 polysaccharide transporter, PST family compare
H281DRAFT_05943 +0.5 1.6 Permease of the drug/metabolite transporter (DMT) superfamily compare
H281DRAFT_06032 +0.5 1.3 peroxiredoxin, Ohr subfamily compare
H281DRAFT_02592 +0.5 0.6 fumarase, class II compare
H281DRAFT_00010 +0.5 1.4 nitrile hydratase compare
H281DRAFT_02624 +0.5 2.4 4-carboxymuconolactone decarboxylase compare
H281DRAFT_00648 +0.5 1.9 Uncharacterized conserved protein YgbK, DUF1537 family compare
H281DRAFT_02613 +0.5 2.7 amino acid ABC transporter ATP-binding protein, PAAT family (TC 3.A.1.3.-) compare
H281DRAFT_06511 +0.5 1.1 reactive intermediate/imine deaminase compare
H281DRAFT_05172 +0.5 2.3 hypothetical protein compare
H281DRAFT_04150 +0.5 2.4 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_04857 +0.5 1.2 hypothetical protein compare
H281DRAFT_03839 +0.5 1.1 hypothetical protein compare
H281DRAFT_03847 +0.5 2.6 transcriptional regulator, LysR family compare
H281DRAFT_03009 +0.5 0.9 acetyl coenzyme A synthetase (ADP forming), alpha domain-containing protein compare
H281DRAFT_05913 +0.5 2.3 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_02238 +0.5 1.6 Heat shock protein. Metallo peptidase. MEROPS family M48B compare
H281DRAFT_01243 +0.5 1.5 lipoprotein, YaeC family compare
H281DRAFT_02486 +0.5 2.1 oxalate/formate antiporter compare
H281DRAFT_00172 +0.5 1.2 DNA-nicking endonuclease, Smr domain compare
H281DRAFT_04728 +0.5 1.9 type IV fimbrial biogenesis protein FimT compare
H281DRAFT_06555 +0.5 1.1 hypothetical protein compare
H281DRAFT_03981 +0.5 2.4 Uncharacterized membrane protein compare
H281DRAFT_06564 +0.5 2.4 hypothetical protein compare
H281DRAFT_03854 +0.5 1.8 Predicted metal-dependent hydrolase, TIM-barrel fold compare
H281DRAFT_01224 +0.5 1.1 Predicted metal-dependent hydrolase, TIM-barrel fold compare
H281DRAFT_02835 +0.5 1.7 Membrane bound FAD containing D-sorbitol dehydrogenase compare
H281DRAFT_02216 +0.5 3.3 MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG compare
H281DRAFT_04970 +0.5 1.1 high-affinity iron transporter compare
H281DRAFT_01533 +0.5 1.5 transcriptional regulator, LysR family compare
H281DRAFT_03734 +0.5 1.3 carbohydrate ABC transporter ATP-binding protein, CUT1 family compare
H281DRAFT_02577 +0.5 1.8 Sugar phosphate isomerase/epimerase compare
H281DRAFT_03346 +0.5 1.1 Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family compare
H281DRAFT_00674 +0.4 2.1 malonate transporter, MadM subunit compare
H281DRAFT_01211 +0.4 2.5 Transcriptional regulator of acetoin/glycerol metabolism compare
H281DRAFT_04002 +0.4 1.2 tRNA_Arg_ACG compare
H281DRAFT_03440 +0.4 1.3 PAP2 superfamily protein compare
H281DRAFT_06083 +0.4 1.2 heat shock protein Hsp20 compare
H281DRAFT_01239 +0.4 1.8 hypothetical protein compare
H281DRAFT_03356 +0.4 1.4 glycerate dehydrogenase compare
H281DRAFT_02734 +0.4 2.0 YXWGXW repeat-containing protein compare
H281DRAFT_01443 +0.4 1.1 RND family efflux transporter, MFP subunit compare
H281DRAFT_05879 +0.4 1.5 DNA-binding transcriptional regulator, MarR family compare
H281DRAFT_04743 +0.4 1.9 MFS transporter, DHA1 family, arabinose polymer transporter compare
H281DRAFT_04598 +0.4 2.1 putative toxin-antitoxin system toxin component, PIN family compare
H281DRAFT_05195 +0.4 2.5 KDO2-lipid IV(A) lauroyltransferase compare
H281DRAFT_05952 +0.4 1.0 transcriptional regulator, LysR family compare
H281DRAFT_05296 +0.4 1.2 GntR family transcriptional regulator, histidine utilization repressor compare
H281DRAFT_01727 +0.4 2.0 Short-chain dehydrogenase compare
H281DRAFT_05972 +0.4 2.3 conserved hypothetical protein compare
H281DRAFT_00919 +0.4 1.2 hypothetical protein compare
H281DRAFT_04783 +0.4 2.5 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_05641 +0.4 1.9 phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein compare
H281DRAFT_03438 +0.4 2.8 polysaccharide transporter, PST family compare
H281DRAFT_02636 +0.4 1.3 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Paraburkholderia bryophila 376MFSha3.1 in carbon source experiments

For carbon source L-Glutamic acid monopotassium salt monohydrate across organisms