Experiment set6IT016 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with sodium iodide 0.125 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_4059 -4.1 -2.1 DNA-binding protein HU-alpha compare
Pf6N2E2_2574 -3.4 -2.3 Flagellar synthesis regulator FleN compare
Pf6N2E2_3252 -2.9 -7.9 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_5001 -2.8 -1.9 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_3617 -2.7 -4.6 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_4987 -2.7 -1.9 MaoC-like domain protein compare
Pf6N2E2_5068 -2.5 -12.2 putative Cytochrome bd2, subunit I compare
Pf6N2E2_1056 -2.5 -1.5 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_4803 -2.5 -2.3 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_3253 -2.3 -6.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_3611 -2.3 -2.2 HflC protein compare
Pf6N2E2_3782 -2.3 -3.7 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_4153 -2.2 -1.4 Sensory box histidine kinase compare
Pf6N2E2_288 -2.1 -2.7 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_3303 -2.1 -4.3 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_2827 -2.1 -1.8 hypothetical protein compare
Pf6N2E2_5069 -2.1 -5.9 putative Cytochrome bd2, subunit II compare
Pf6N2E2_3908 -2.0 -6.1 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_3841 -2.0 -5.1 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_4969 -1.9 -1.6 hypothetical protein compare
Pf6N2E2_2313 -1.9 -3.6 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_5338 -1.9 -7.6 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_5527 -1.9 -2.4 Cold shock protein CspC compare
Pf6N2E2_3834 -1.8 -5.4 Lipoprotein NlpD compare
Pf6N2E2_5242 -1.8 -2.6 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_3251 -1.8 -7.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_698 -1.8 -2.2 Heme d1 biosynthesis protein NirH compare
Pf6N2E2_3610 -1.7 -4.6 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_1116 -1.7 -1.4 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf6N2E2_5014 -1.7 -1.4 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_5339 -1.7 -5.4 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_5316 -1.6 -2.1 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_3839 -1.6 -4.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_579 -1.6 -2.3 FIG00962753: hypothetical protein compare
Pf6N2E2_4204 -1.6 -1.8 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_2507 -1.6 -4.6 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_4369 -1.6 -2.7 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_2753 -1.5 -2.4 HtrA protease/chaperone protein compare
Pf6N2E2_4159 -1.5 -3.7 Cytochrome c4 compare
Pf6N2E2_6140 -1.5 -1.2 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_5337 -1.5 -3.8 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_5342 -1.5 -3.1 21 kDa hemolysin precursor compare
Pf6N2E2_5006 -1.5 -5.7 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_2261 -1.5 -5.5 VacJ-like lipoprotein precursor compare
Pf6N2E2_156 -1.5 -2.0 Carbon storage regulator compare
Pf6N2E2_74 -1.5 -2.6 DedD protein compare
Pf6N2E2_4611 -1.5 -3.5 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_2180 -1.4 -3.1 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_1886 -1.4 -1.8 hypothetical protein compare
Pf6N2E2_5536 -1.4 -1.6 Holliday junction DNA helicase RuvA compare
Pf6N2E2_2508 -1.4 -3.4 hypothetical protein compare
Pf6N2E2_5453 -1.4 -3.6 hypothetical protein compare
Pf6N2E2_4638 -1.4 -2.5 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_2503 -1.4 -1.5 Glycosyl transferase, group 1 family protein compare
Pf6N2E2_5508 -1.4 -1.7 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_2320 -1.4 -2.4 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_3842 -1.4 -2.5 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_5746 -1.4 -2.6 Cobalamin synthase compare
Pf6N2E2_2752 -1.4 -5.7 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_2010 -1.4 -1.8 hypothetical protein compare
Pf6N2E2_2218 -1.4 -3.3 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_309 -1.3 -2.0 FIG00957702: hypothetical protein compare
Pf6N2E2_2311 -1.3 -5.8 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_3786 -1.3 -3.3 Twin-arginine translocation protein TatC compare
Pf6N2E2_2317 -1.3 -3.6 Putative analog of CcoH, COG3198 compare
Pf6N2E2_3713 -1.3 -1.8 Acyl carrier protein compare
Pf6N2E2_2219 -1.3 -1.7 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_3833 -1.3 -4.3 hypothetical protein compare
Pf6N2E2_2318 -1.2 -5.5 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_4585 -1.2 -7.7 Cell division protein FtsX compare
Pf6N2E2_5052 -1.2 -1.9 Hydrolase in polyol utilization gene cluster, haloacid dehalogenase-like family compare
Pf6N2E2_3940 -1.2 -5.1 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_204 -1.2 -1.7 hypothetical protein compare
Pf6N2E2_2825 -1.2 -3.1 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_5820 -1.2 -2.2 FIG00957914: hypothetical protein compare
Pf6N2E2_2310 -1.2 -6.3 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_5646 -1.2 -1.7 PROBABLE MEMBRANE PROTEIN compare
Pf6N2E2_2510 -1.2 -3.3 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_2071 -1.2 -2.6 hypothetical protein compare
Pf6N2E2_3257 -1.2 -2.3 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_70 -1.2 -2.9 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_4889 -1.2 -4.5 Putative transport protein compare
Pf6N2E2_3261 -1.2 -3.9 hypothetical protein compare
Pf6N2E2_1838 -1.1 -2.2 6-hexanolactone hydrolase compare
Pf6N2E2_1743 -1.1 -2.3 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) compare
Pf6N2E2_6095 -1.1 -2.4 tRNA-Asn-GTT compare
Pf6N2E2_2984 -1.1 -2.1 LysR family transcriptional regulator PA3398 compare
Pf6N2E2_5986 -1.1 -2.4 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_648 -1.1 -2.1 General secretion pathway protein K compare
Pf6N2E2_4047 -1.1 -3.7 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_4579 -1.1 -1.8 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_2201 -1.1 -2.8 Transmembrane regulator protein PrtR compare
Pf6N2E2_3085 -1.1 -2.0 FIG00954614: hypothetical protein compare
Pf6N2E2_3783 -1.1 -3.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_1694 -1.0 -1.3 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_1352 -1.0 -1.9 Cation transport ATPase compare
Pf6N2E2_4071 -1.0 -1.9 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_1248 -1.0 -2.3 MutT/nudix family protein compare
Pf6N2E2_2518 -1.0 -2.3 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_3033 -1.0 -1.6 hypothetical protein compare
Pf6N2E2_3505 -1.0 -1.4 Translation initiation factor SUI1-related protein compare
Pf6N2E2_504 -1.0 -1.6 DNA-binding response regulator compare
Pf6N2E2_384 -1.0 -2.6 Glycine cleavage system transcriptional activator compare
Pf6N2E2_1508 -1.0 -2.3 DNA-binding response regulator compare
Pf6N2E2_1022 -1.0 -2.7 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
Pf6N2E2_1305 -1.0 -2.3 Homoprotocatechuate degradative operon repressor compare
Pf6N2E2_3607 -1.0 -4.7 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_5261 -1.0 -1.0 FIG00956983: hypothetical protein compare
Pf6N2E2_2274 -1.0 -3.4 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_2459 -1.0 -1.6 Organic hydroperoxide resistance protein compare
Pf6N2E2_1081 -1.0 -1.5 probable membrane protein YPO3302 compare
Pf6N2E2_3285 -1.0 -2.8 Rod shape-determining protein MreD compare
Pf6N2E2_146 -0.9 -1.0 Transcriptional regulator, MarR family compare
Pf6N2E2_3695 -0.9 -2.7 Helix-turn-helix motif compare
Pf6N2E2_4451 -0.9 -3.4 FIG139438: lipoprotein B compare
Pf6N2E2_4710 -0.9 -1.8 hypothetical protein compare
Pf6N2E2_2582 -0.9 -2.3 Flagellar motor switch protein FliN compare
Pf6N2E2_3258 -0.9 -2.6 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_5520 -0.9 -3.7 Sensory box histidine kinase compare
Pf6N2E2_4584 -0.9 -1.5 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_2127 -0.9 -2.3 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_1126 -0.9 -3.0 Two-component system regulatory protein compare
Pf6N2E2_3835 -0.9 -1.8 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_3778 -0.8 -0.9 FIG00954300: hypothetical protein compare
Pf6N2E2_3941 -0.8 -2.1 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_2300 -0.8 -2.4 LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM compare
Pf6N2E2_5677 -0.8 -1.0 Carbon storage regulator compare
Pf6N2E2_1870 -0.8 -1.7 hypothetical protein compare
Pf6N2E2_145 -0.8 -5.1 putative exported protein compare
Pf6N2E2_189 -0.8 -1.4 regulatory protein, putative compare
Pf6N2E2_5771 -0.8 -4.4 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) compare
Pf6N2E2_2778 -0.8 -2.6 Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) compare
Pf6N2E2_5160 -0.8 -1.4 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_2934 -0.8 -1.6 lipoprotein, putative compare
Pf6N2E2_945 -0.8 -1.3 Transcriptional regulator, TetR family compare
Pf6N2E2_5780 -0.8 -4.5 Periplasmic protease compare
Pf6N2E2_5251 -0.8 -2.9 FIG00954698: hypothetical protein compare
Pf6N2E2_2161 -0.8 -2.6 Conserved domain protein compare
Pf6N2E2_2824 -0.8 -4.8 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_3255 -0.8 -1.9 YrbA protein compare
Pf6N2E2_1584 -0.8 -1.8 Transcriptional regulator, MarR family / Acetyltransferase (GNAT) compare
Pf6N2E2_5806 -0.8 -2.2 hypothetical protein compare
Pf6N2E2_3477 -0.8 -0.9 2-Oxobutyrate oxidase, putative compare
Pf6N2E2_2756 -0.8 -3.0 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_3521 -0.8 -4.0 Sensor histidine kinase/response regulator compare
Pf6N2E2_229 -0.8 -2.2 Putative fumarylacetoacetate (FAA) hydrolase compare
Pf6N2E2_6130 -0.8 -2.4 5S RNA compare
Pf6N2E2_1705 -0.8 -1.1 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_3884 -0.8 -3.5 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf6N2E2_5944 -0.8 -2.7 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) compare
Pf6N2E2_4306 -0.8 -2.8 Uncharacterized protein ImpI/VasC compare
Pf6N2E2_5237 -0.8 -1.1 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
Pf6N2E2_4612 -0.7 -2.3 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_1493 -0.7 -2.8 ABC-type polar amino acid transport system, ATPase component compare
Pf6N2E2_5758 -0.7 -1.6 FIG00957314: hypothetical protein compare
Pf6N2E2_3529 -0.7 -1.4 Toxin A compare
Pf6N2E2_5430 -0.7 -4.1 Transglycosylase, Slt family compare
Pf6N2E2_4075 -0.7 -2.5 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_1279 -0.7 -1.9 Putative PpiC-type peptidyl-prolyl cis-trans isomerase precursor associated with VreARI signaling system compare
Pf6N2E2_5647 -0.7 -2.4 Transcriptional regulator, TetR family compare
Pf6N2E2_1782 -0.7 -1.6 STAS domain protein compare
Pf6N2E2_3666 -0.7 -1.6 InaA protein compare
Pf6N2E2_28 -0.7 -2.1 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf6N2E2_4826 -0.7 -3.3 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_1196 -0.7 -2.8 hypothetical protein compare
Pf6N2E2_155 -0.7 -1.6 Probable transmembrane protein compare
Pf6N2E2_4048 -0.7 -2.5 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_3198 -0.7 -0.9 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_71 -0.7 -3.0 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_5245 -0.7 -3.0 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2552 -0.7 -3.0 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_3260 -0.7 -2.4 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_1157 -0.7 -2.1 hypothetical protein possibly connected to lactam utilization and allophanate hydrolase compare
Pf6N2E2_40 -0.7 -2.9 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2207 -0.7 -2.4 cytochrome b(561) compare
Pf6N2E2_533 -0.7 -2.0 Na(+) H(+) antiporter subunit G compare
Pf6N2E2_4448 -0.7 -1.2 probable P23 protein compare
Pf6N2E2_5705 -0.7 -1.3 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_5919 -0.7 -1.4 Flp pilus assembly protein TadD, contains TPR repeats compare
Pf6N2E2_4438 -0.7 -1.6 hypothetical protein compare
Pf6N2E2_193 -0.7 -2.2 hypothetical protein compare
Pf6N2E2_1682 -0.7 -2.1 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf6N2E2_3840 -0.7 -1.9 FIG00956267: hypothetical protein compare
Pf6N2E2_453 -0.7 -1.8 LysR family transcriptional regulator STM2281 compare
Pf6N2E2_3206 -0.7 -0.7 hypothetical protein compare
Pf6N2E2_984 -0.7 -3.6 FIG00553873: hypothetical protein compare
Pf6N2E2_4187 -0.7 -1.7 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_3349 -0.7 -1.4 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_1336 -0.7 -2.2 AraC family transcription regulator compare
Pf6N2E2_451 -0.7 -1.6 transcriptional regulator MvaT, P16 subunit, putative compare
Pf6N2E2_1317 -0.7 -1.6 P-hydroxyphenylacetate hydroxylase C2:oxygenase component compare
Pf6N2E2_2003 -0.7 -1.3 hypothetical protein compare
Pf6N2E2_5499 -0.7 -0.7 hypothetical protein compare
Pf6N2E2_704 -0.7 -2.3 Cytochrome c551/c552 compare
Pf6N2E2_3534 -0.7 -1.6 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_3039 -0.7 -2.3 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_754 -0.7 -1.0 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf6N2E2_493 -0.7 -2.2 YD repeat protein compare
Pf6N2E2_2925 -0.7 -2.4 ABC transporter for L-leucine/L-isoleucine/L-phenylalanine/D-alanine, ATPase component 1 LivG (from data) compare
Pf6N2E2_1564 -0.7 -2.7 3-dehydroquinate synthase (EC 4.2.3.4) compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in stress experiments

For stress sodium iodide across organisms