Experiment set6IT015 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

p-Coumaric acid carbon source

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_01275 +1.2 5.3 MFS transporter, AAHS family, 3-hydroxyphenylpropionic acid transporter compare
H281DRAFT_04544 +1.2 2.3 diacylglycerol kinase (ATP) compare
H281DRAFT_04391 +1.1 10.3 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_00559 +1.1 3.3 hypothetical protein compare
H281DRAFT_05830 +1.0 2.5 hypothetical protein compare
H281DRAFT_04390 +0.9 7.5 ATP-binding cassette, subfamily B compare
H281DRAFT_01274 +0.9 4.4 Outer membrane protein (porin) compare
H281DRAFT_04899 +0.9 2.6 microcin C transport system ATP-binding protein compare
H281DRAFT_01943 +0.9 3.6 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) compare
H281DRAFT_01028 +0.8 1.6 peptide/nickel transport system permease protein compare
H281DRAFT_01125 +0.8 1.2 protein of unknown function (DUF2760) compare
H281DRAFT_04837 +0.8 6.3 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family compare
H281DRAFT_01108 +0.8 2.2 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_01509 +0.8 1.7 Uncharacterized conserved protein YgbK, DUF1537 family compare
H281DRAFT_04893 +0.8 2.4 transcriptional regulator, LysR family compare
H281DRAFT_02441 +0.8 1.8 putative ABC transport system ATP-binding protein compare
H281DRAFT_00315 +0.8 4.0 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_01021 +0.8 1.4 Nitroreductase compare
H281DRAFT_00757 +0.8 1.5 hypothetical protein compare
H281DRAFT_01222 +0.8 1.7 monosaccharide ABC transporter membrane protein, CUT2 family compare
H281DRAFT_00254 +0.7 5.4 DNA (cytosine-5)-methyltransferase 1 compare
H281DRAFT_01914 +0.7 4.6 Predicted PurR-regulated permease PerM compare
H281DRAFT_04002 +0.7 1.9 tRNA_Arg_ACG compare
H281DRAFT_01299 +0.7 1.4 methylene-tetrahydromethanopterin dehydrogenase compare
H281DRAFT_01679 +0.7 1.7 shikimate dehydrogenase (EC 1.1.1.25) compare
H281DRAFT_01599 +0.7 1.6 GTP cyclohydrolase I compare
H281DRAFT_05499 +0.7 1.8 putative spermidine/putrescine transport system permease protein compare
H281DRAFT_04359 +0.7 0.7 Glutaredoxin and related proteins compare
H281DRAFT_01514 +0.7 0.7 ribose 1,5-bisphosphokinase compare
H281DRAFT_00998 +0.7 2.3 outer membrane protein, multidrug efflux system compare
H281DRAFT_04270 +0.7 5.2 L-glutamate-binding protein /L-aspartate-binding protein compare
H281DRAFT_01321 +0.7 1.5 probable H4MPT-linked C1 transfer pathway protein compare
H281DRAFT_00654 +0.7 2.4 putative spermidine/putrescine transport system substrate-binding protein compare
H281DRAFT_03221 +0.7 2.3 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_01441 +0.7 1.3 two component heavy metal response transcriptional regulator, winged helix family compare
H281DRAFT_02599 +0.6 1.5 hypothetical protein compare
H281DRAFT_05289 +0.6 3.1 N-hydroxyarylamine O-acetyltransferase compare
H281DRAFT_04880 +0.6 1.2 PRC-barrel domain-containing protein compare
H281DRAFT_04858 +0.6 1.4 hypothetical protein compare
H281DRAFT_04400 +0.6 5.4 membrane-bound lytic murein transglycosylase D compare
H281DRAFT_06078 +0.6 2.0 protein of unknown function (DUF4148) compare
H281DRAFT_03273 +0.6 1.8 Uncharacterized membrane protein YqjE compare
H281DRAFT_06528 +0.6 2.5 cobalt-precorrin 5A hydrolase compare
H281DRAFT_01721 +0.6 1.5 zinc-binding alcohol dehydrogenase family protein compare
H281DRAFT_00418 +0.6 2.6 putative spermidine/putrescine transport system substrate-binding protein compare
H281DRAFT_04755 +0.6 2.8 transcriptional regulator, LysR family compare
H281DRAFT_03734 +0.6 2.0 carbohydrate ABC transporter ATP-binding protein, CUT1 family compare
H281DRAFT_06024 +0.6 2.4 transcriptional regulator, LysR family compare
H281DRAFT_04604 +0.6 4.1 Protein of unknown function (DUF2863) compare
H281DRAFT_05512 +0.6 1.9 branched-chain amino acid transport system ATP-binding protein compare
H281DRAFT_03418 +0.6 1.2 3-hydroxyisobutyrate dehydrogenase compare
H281DRAFT_03157 +0.6 1.8 transcriptional regulator, LysR family compare
H281DRAFT_00680 +0.6 2.5 Glycosyltransferases involved in cell wall biogenesis compare
H281DRAFT_00690 +0.6 1.5 NADPH:quinone reductase compare
H281DRAFT_03303 +0.6 2.0 NAD+ synthase (glutamine-hydrolysing) compare
H281DRAFT_01443 +0.6 1.3 RND family efflux transporter, MFP subunit compare
H281DRAFT_01243 +0.6 1.6 lipoprotein, YaeC family compare
H281DRAFT_02575 +0.6 1.6 D-threo-aldose 1-dehydrogenase compare
H281DRAFT_04946 +0.6 1.4 putative spermidine/putrescine transport system ATP-binding protein compare
H281DRAFT_01236 +0.6 2.8 Protein-tyrosine-phosphatase compare
H281DRAFT_06087 +0.5 2.7 Uncharacterized membrane protein compare
H281DRAFT_01372 +0.5 2.1 protocatechuate 4,5-dioxygenase alpha subunit (EC 1.13.11.8) compare
H281DRAFT_00695 +0.5 2.5 choline-sulfatase compare
H281DRAFT_02067 +0.5 2.1 hypothetical protein compare
H281DRAFT_06400 +0.5 1.4 hypothetical protein compare
H281DRAFT_00927 +0.5 3.0 UPF0755 protein compare
H281DRAFT_00339 +0.5 1.9 Uncharacterized membrane protein compare
H281DRAFT_05753 +0.5 3.5 flagellar biosynthesis protein FlhA compare
H281DRAFT_02618 +0.5 2.6 transcriptional regulator, LysR family compare
H281DRAFT_00317 +0.5 2.9 O-antigen ligase compare
H281DRAFT_05457 +0.5 2.6 2,3-dihydroxyphenylpropionate 1,2-dioxygenase compare
H281DRAFT_04415 +0.5 1.0 phosphate uptake regulator, PhoU compare
H281DRAFT_04269 +0.5 3.2 L-glutamate ABC transporter membrane protein /L-aspartate ABC transporter membrane protein compare
H281DRAFT_01107 +0.5 1.2 hypothetical protein compare
H281DRAFT_01382 +0.5 1.1 Cellulose biosynthesis protein BcsR compare
H281DRAFT_05912 +0.5 1.7 transcriptional regulator, TetR family compare
H281DRAFT_05192 +0.5 1.4 phage shock protein A (PspA) family protein compare
H281DRAFT_03095 +0.5 2.2 membrane fusion protein, multidrug efflux system compare
H281DRAFT_05502 +0.5 1.4 transketolase subunit B compare
H281DRAFT_02922 +0.5 2.4 transcriptional regulator, AraC family compare
H281DRAFT_05174 +0.5 2.2 nitronate monooxygenase compare
H281DRAFT_00878 +0.5 2.5 threonine dehydratase compare
H281DRAFT_01111 +0.5 0.9 transcriptional regulator, DeoR family compare
H281DRAFT_03315 +0.5 0.9 HSP20 family protein compare
H281DRAFT_06338 +0.5 1.6 2-haloacid dehalogenase compare
H281DRAFT_00316 +0.5 3.4 ADP-heptose:LPS heptosyltransferase compare
H281DRAFT_01705 +0.5 0.9 aliphatic nitrilase compare
H281DRAFT_00976 +0.5 0.9 LysR family transcriptional regulator, glycine cleavage system transcriptional activator compare
H281DRAFT_01489 +0.5 1.6 hypothetical protein compare
H281DRAFT_04998 +0.5 1.1 type III secretion protein T compare
H281DRAFT_00488 +0.5 1.8 exonuclease RecJ compare
H281DRAFT_00819 +0.5 0.9 competence protein ComEA compare
H281DRAFT_04268 +0.5 3.3 L-glutamate ABC transporter membrane protein /L-aspartate ABC transporter membrane protein compare
H281DRAFT_06070 +0.5 1.5 FimV C-terminal domain-containing protein compare
H281DRAFT_02474 +0.5 1.1 electron transfer flavoprotein beta subunit compare
H281DRAFT_01779 +0.5 2.8 DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains compare
H281DRAFT_06041 +0.5 2.1 Tautomerase enzyme compare
H281DRAFT_05098 +0.5 2.1 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_04934 +0.5 1.5 Sensors of blue-light using FAD compare
H281DRAFT_02658 +0.5 1.2 carbonic anhydrase compare
H281DRAFT_00376 +0.5 1.4 transcriptional regulator, TetR family compare
H281DRAFT_04786 +0.5 1.9 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_00068 +0.5 3.0 Transposase compare
H281DRAFT_03372 +0.5 0.9 hypothetical protein compare
H281DRAFT_05678 +0.5 1.2 hypothetical protein compare
H281DRAFT_04433 +0.5 1.5 Undecaprenyl-diphosphatase compare
H281DRAFT_00470 +0.5 3.0 murein-DD-endopeptidase. Serine peptidase. MEROPS family S11 compare
H281DRAFT_00660 +0.5 1.2 Glyoxalase superfamily enzyme, possibly 3-demethylubiquinone-9 3-methyltransferase compare
H281DRAFT_00377 +0.5 1.2 N-carbamoyl-L-amino-acid hydrolase compare
H281DRAFT_03496 +0.5 1.6 hypothetical protein compare
H281DRAFT_04784 +0.5 2.7 O-antigen ligase like membrane protein compare
H281DRAFT_01067 +0.5 0.9 NitT/TauT family transport system ATP-binding protein compare
H281DRAFT_02957 +0.5 1.3 Predicted xylanase/chitin deacetylase compare
H281DRAFT_00440 +0.5 2.7 hypothetical protein compare
H281DRAFT_02855 +0.5 1.1 carbonic anhydrase compare
H281DRAFT_01767 +0.5 0.9 hypothetical protein compare
H281DRAFT_02626 +0.5 1.6 hypothetical protein compare
H281DRAFT_04594 +0.5 1.9 putative oxepin-CoA hydrolase (EC 3.3.2.12) (from data) compare
H281DRAFT_05356 +0.5 1.8 hypothetical protein compare
H281DRAFT_05816 +0.5 3.7 soluble lytic murein transglycosylase compare
H281DRAFT_03855 +0.5 1.2 Sugar phosphate isomerase/epimerase compare
H281DRAFT_03378 +0.5 1.6 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_02755 +0.4 1.8 Uncharacterized membrane protein compare
H281DRAFT_03844 +0.4 2.0 L-glutamine synthetase (EC 6.3.1.2) compare
H281DRAFT_00245 +0.4 1.8 MFS transporter, DHA2 family, multidrug resistance protein compare
H281DRAFT_05561 +0.4 2.7 transcriptional regulator, TetR family compare
H281DRAFT_01007 +0.4 1.6 hypothetical protein compare
H281DRAFT_05342 +0.4 1.9 drug resistance transporter, EmrB/QacA subfamily compare
H281DRAFT_06011 +0.4 1.1 SSU ribosomal protein S21P compare
H281DRAFT_06370 +0.4 2.0 tight adherence protein C compare
H281DRAFT_02966 +0.4 1.2 nucleoside-binding protein compare
H281DRAFT_06344 +0.4 2.4 transcriptional regulator, LysR family compare
H281DRAFT_03835 +0.4 1.0 NitT/TauT family transport system permease protein compare
H281DRAFT_01775 +0.4 1.6 Putative intracellular protease/amidase compare
H281DRAFT_04276 +0.4 1.8 gluconate permease GntT compare
H281DRAFT_04039 +0.4 1.0 hypothetical protein compare
H281DRAFT_05483 +0.4 1.5 protein of unknown function (DUF1840) compare
H281DRAFT_03438 +0.4 2.1 polysaccharide transporter, PST family compare
H281DRAFT_06473 +0.4 1.4 NTE family protein compare
H281DRAFT_00326 +0.4 0.9 pyrroloquinoline quinone biosynthesis protein D compare
H281DRAFT_01711 +0.4 1.5 Na/Pi-cotransporter compare
H281DRAFT_05867 +0.4 1.9 uncharacterized peroxidase-related enzyme compare
H281DRAFT_02149 +0.4 2.6 Osmotically-inducible protein OsmY, contains BON domain compare
H281DRAFT_04954 +0.4 2.1 Threonine/homoserine efflux transporter RhtA compare
H281DRAFT_06295 +0.4 2.7 2-keto-3-deoxy-phosphogalactonate aldolase compare
H281DRAFT_00939 +0.4 1.8 hypothetical protein compare
H281DRAFT_00067 +0.4 1.6 transposase, IS4 family compare
H281DRAFT_00284 +0.4 1.8 Predicted membrane protein compare
H281DRAFT_04838 +0.4 3.6 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family compare
H281DRAFT_01836 +0.4 1.1 hypothetical protein compare
H281DRAFT_04871 +0.4 1.4 urocanate hydratase compare
H281DRAFT_04850 +0.4 1.1 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase compare
H281DRAFT_05756 +0.4 1.6 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG compare
H281DRAFT_03732 +0.4 0.8 carbohydrate ABC transporter membrane protein 1, CUT1 family compare
H281DRAFT_03478 +0.4 1.7 Predicted unusual protein kinase regulating ubiquinone biosynthesis, AarF/ABC1/UbiB family compare
H281DRAFT_05010 +0.4 0.8 type III secretion protein R compare
H281DRAFT_05351 +0.4 1.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
H281DRAFT_01122 +0.4 1.1 hypothetical protein compare
H281DRAFT_05327 +0.4 2.9 Outer membrane protein (porin) compare
H281DRAFT_04768 +0.4 0.9 colanic acid biosynthesis protein WcaH compare
H281DRAFT_03348 +0.4 0.8 amino acid ABC transporter ATP-binding protein, PAAT family compare
H281DRAFT_00722 +0.4 0.8 transcriptional regulator, Crp/Fnr family compare
H281DRAFT_04309 +0.4 1.2 transcriptional regulator, ArsR family compare
H281DRAFT_02846 +0.4 1.2 Uncharacterized conserved protein YndB, AHSA1/START domain compare
H281DRAFT_01923 +0.4 1.9 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) compare
H281DRAFT_03710 +0.4 1.6 Nitrate/nitrite transporter NarK compare
H281DRAFT_03429 +0.4 0.9 cytochrome bo3 quinol oxidase subunit 4 (EC 1.10.3.-) compare
H281DRAFT_03227 +0.4 1.3 transcriptional regulator, LacI family compare
H281DRAFT_04665 +0.4 2.4 Polyisoprenoid-binding protein YceI compare
H281DRAFT_04542 +0.4 1.4 hypothetical protein compare
H281DRAFT_03199 +0.4 2.0 flagellar transcriptional activator FlhD compare
H281DRAFT_02612 +0.4 1.3 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase compare
H281DRAFT_06035 +0.4 1.8 esterase, PHB depolymerase family compare
H281DRAFT_04713 +0.4 2.4 membrane-associated protein compare
H281DRAFT_02449 +0.4 1.2 hypothetical protein compare
H281DRAFT_05147 +0.4 2.6 chromate transporter compare
H281DRAFT_03820 +0.4 0.7 methylated-DNA-[protein]-cysteine S-methyltransferase compare
H281DRAFT_00575 +0.4 1.5 Uncharacterized conserved protein YtfP, gamma-glutamylcyclotransferase (GGCT)/AIG2-like family compare
H281DRAFT_02577 +0.4 1.9 Sugar phosphate isomerase/epimerase compare
H281DRAFT_03234 +0.4 1.0 chemotaxis protein MotA compare
H281DRAFT_01239 +0.4 0.9 hypothetical protein compare
H281DRAFT_03419 +0.4 0.9 4-carboxy-4-hydroxy-2-oxoadipate aldolase (EC 4.1.3.-) compare
H281DRAFT_05724 +0.4 2.8 3-oxo-5,6-didehydrosuberyl-CoA semialdehyde dehydrogenase PaaZ (EC:1.2.1.91) (from data) compare
H281DRAFT_03400 +0.4 0.8 cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein (EC 1.10.3.10) compare
H281DRAFT_00130 +0.4 1.0 Predicted secreted protein compare
H281DRAFT_02905 +0.4 0.9 L-lactate dehydrogenase complex protein LldE compare
H281DRAFT_01766 +0.4 1.1 cytochrome c oxidase subunit 2 compare
H281DRAFT_04601 +0.4 2.0 hypothetical protein compare
H281DRAFT_01746 +0.4 1.8 D-3-phosphoglycerate dehydrogenase compare
H281DRAFT_02686 +0.4 1.9 transcriptional regulator, LysR family compare
H281DRAFT_06017 +0.4 0.7 Exodeoxyribonuclease VII small subunit compare
H281DRAFT_05539 +0.4 2.4 D-3-phosphoglycerate dehydrogenase compare
H281DRAFT_03055 +0.4 1.7 hypothetical protein compare
H281DRAFT_01367 +0.4 2.1 Protein of unknown function (DUF2891) compare
H281DRAFT_03144 +0.4 0.9 putative phosphoesterase compare
H281DRAFT_05392 +0.4 2.0 hypothetical protein compare
H281DRAFT_03391 +0.4 1.8 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_00528 +0.4 2.3 hypothetical protein compare
H281DRAFT_01756 +0.4 1.1 Anti-sigma regulatory factor (Ser/Thr protein kinase) compare
H281DRAFT_03442 +0.4 2.3 mannose-6-phosphate isomerase, type 2 compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source p-Coumaric acid in Paraburkholderia bryophila 376MFSha3.1

For carbon source p-Coumaric acid across organisms