Experiment set6IT014 for Phaeobacter inhibens DSM 17395

Compare to:

marine broth with Aluminum chloride hydrate 1.25 mM

200 most detrimental genes:

  gene name fitness t score description  
PGA1_c11540 +2.1 3.7 gamma-glutamylputrescine synthetase PuuA compare
PGA1_78p00490 +1.6 2.8 putative HTH-type transcriptional regulator compare
PGA1_c07900 +1.4 9.8 alpha-glucoside transport ATP-binding protein AglK compare
PGA1_c07880 +1.3 8.1 alpha-glucoside transport system permease protein AglG compare
PGA1_c07890 +1.3 9.1 cytoplasmic trehalase (AlgA) (from data) compare
PGA1_c07870 +1.3 9.5 alpha-glucoside transport system permease protein AglF compare
PGA1_c08590 +1.3 8.9 heme NO binding domain-containing protein compare
PGA1_c07860 +1.2 9.4 alpha-glucosides-binding periplasmic protein AglE compare
PGA1_c34880 +1.2 9.9 putative response regulator compare
PGA1_c34890 +1.2 9.0 putative histidine-containing phosphotransfer protein compare
PGA1_c08600 +1.2 8.4 diguanylate cyclase (GGDEF) domain-containing protein compare
PGA1_c35920 +1.1 2.1 thiamine kinase ThiK-like protein compare
PGA1_262p01600 +1.1 2.7 putative ABC transporter, ATP binding protein compare
PGA1_c20140 +1.0 6.2 putative arginine-tRNA-protein transferase compare
PGA1_c33190 +1.0 6.3 putative anti-sigma-B factor antagonist compare
PGA1_c01150 +1.0 7.4 transcriptional regulatory protein ChvI compare
PGA1_c01160 +0.9 7.3 sensor protein ChvG compare
PGA1_c23800 +0.9 5.6 hypothetical protein compare
PGA1_262p01165 +0.8 1.9 hypothetical protein compare
PGA1_262p00660 +0.8 2.5 Predicted periplasmic protein compare
PGA1_c12310 +0.8 5.3 glucans biosynthesis protein G compare
PGA1_262p01250 +0.8 2.0 transcriptional regulator, crp family compare
PGA1_c12300 +0.8 5.2 glucans biosynthesis glucosyltransferase H compare
PGA1_c08890 +0.8 4.1 putative capsule polysaccharide export outer membrane protein compare
PGA1_78p00500 +0.8 2.2 putative transcriptional regulator compare
PGA1_c12320 +0.7 4.2 Uncharacterized protein conserved in bacteria compare
PGA1_c02440 +0.7 5.5 putative ATP-binding/permease fusion ABC transporter compare
PGA1_c14140 +0.7 1.8 hypothetical protein compare
PGA1_c02460 +0.7 6.2 hypothetical protein compare
PGA1_c05390 +0.7 3.1 glycosyl transferase compare
PGA1_c32520 +0.7 2.8 Protein of unknown function (DUF2938). compare
PGA1_c07710 +0.7 1.3 putative sulfopyruvate decarboxylase subunit alpha compare
PGA1_c06590 +0.7 2.3 putative transcriptional regulator, AsnC family compare
PGA1_c14700 +0.7 2.9 hypothetical protein compare
PGA1_262p00060 +0.7 2.2 putative glycosyl transferase compare
PGA1_c29400 +0.7 2.4 nitrogen regulatory protein P-II compare
PGA1_c27240 +0.7 1.2 hypothetical protein compare
PGA1_c02450 +0.7 5.1 putative outer membrane efflux protein compare
PGA1_c31260 +0.7 6.1 Protein of unknown function (DUF3131). compare
PGA1_c09460 +0.7 2.2 Uncharacterized conserved small protein compare
PGA1_262p00610 +0.7 1.4 metallophosphoesterase compare
PGA1_c36270 +0.7 1.7 hypothetical protein compare
PGA1_c05560 +0.6 2.2 glycine cleavage system protein GcvH compare
PGA1_c02430 +0.6 4.4 type I secretion membrane fusion protein, HlyD family compare
PGA1_c05300 +0.6 3.8 putative glycosyl transferase compare
PGA1_c13420 +0.6 0.9 phosphoribosylformylglycinamidine synthase 1 compare
PGA1_c12550 +0.6 1.1 hypothetical protein compare
PGA1_c15590 +0.6 5.5 putative transcriptional activator protein compare
PGA1_c33220 +0.6 2.2 hemimethylated DNA-binding protein, YccV-like compare
PGA1_c04900 +0.6 2.1 peptidyl-tRNA hydrolase Pth compare
PGA1_c31270 +0.6 5.5 putative glycosyltransferase / polysaccharide deacetylase compare
PGA1_262p01390 +0.6 1.6 hypothetical protein compare
PGA1_c35170 +0.6 1.4 DNA polymerase III subunit epsilon compare
PGA1_c06370 +0.6 2.4 adenine phosphoribosyltransferase Apt compare
PGA1_c06020 +0.6 1.4 thioesterase domain-containing protein compare
PGA1_262p00420 +0.6 2.2 Transcriptional regulator/sugar kinase compare
PGA1_c15310 +0.6 2.6 multidrug transporter EmrE compare
PGA1_c05400 +0.6 3.5 putative glycosyl transferase, family 2 compare
PGA1_c15660 +0.6 2.6 enoyl-CoA hydratase/isomerase family protein compare
PGA1_c11810 +0.6 0.8 hypothetical protein compare
PGA1_262p01470 +0.5 2.2 transcriptional regulator, LysR family compare
PGA1_c17260 +0.5 1.3 hypothetical protein compare
PGA1_c26780 +0.5 1.5 cold shock protein CspA compare
PGA1_c00600 +0.5 0.9 putative acetyltransferase compare
PGA1_c34120 +0.5 1.4 HTH-type transcriptional regulator PetP compare
PGA1_c33490 +0.5 1.1 inositol-1-monophosphatase SuhB compare
PGA1_c12330 +0.5 3.0 hypothetical protein compare
PGA1_c01060 +0.5 1.5 ribonuclease 3 compare
PGA1_c14190 +0.5 3.0 putative transcriptional regulator, AraC family compare
PGA1_262p01410 +0.5 1.2 malate/L-lactate dehydrogenase-like protein compare
PGA1_65p00180 +0.5 1.4 putative sugar transferase compare
PGA1_c23540 +0.5 2.7 O-succinylhomoserine sulfhydrylase MetZ compare
PGA1_c31820 +0.5 3.4 putative ATPase compare
PGA1_c10920 +0.5 3.3 hypothetical protein compare
PGA1_c15220 +0.5 1.7 inosine-5'-monophosphate dehydrogenase GuaB compare
PGA1_c29590 +0.5 2.3 hypothetical protein compare
PGA1_c05290 +0.5 3.5 polysaccharide biosynthesis protein ExoT-like protein compare
PGA1_c14960 +0.5 2.0 putative transcriptional regulator compare
PGA1_c23730 +0.5 1.7 hypothetical protein compare
PGA1_c12160 +0.5 2.4 Uncharacterized protein conserved in bacteria compare
PGA1_c22500 +0.5 1.4 hypothetical protein compare
PGA1_c12290 +0.5 1.5 Poly(3-hydroxybutyrate) depolymerase compare
PGA1_c16420 +0.5 1.4 putative phospholipase / carboxylesterase compare
PGA1_c24300 +0.5 2.1 Uracil-DNA glycosylase compare
PGA1_262p01580 +0.5 1.0 putative metal ion uptake regulator compare
PGA1_c19180 +0.5 1.1 cytochrome c-type biogenesis protein CycH compare
PGA1_c25190 +0.5 2.7 hypothetical protein compare
PGA1_c18900 +0.5 1.1 Uncharacterized conserved protein compare
PGA1_c24310 +0.5 2.6 putative capsular polysaccharide transport system, ATP-binding protein compare
PGA1_c05410 +0.5 3.2 hypothetical protein compare
PGA1_c14560 +0.5 1.1 homoserine O-succinyltransferase MetA compare
PGA1_c03365 +0.5 1.6 Uncharacterized small protein compare
PGA1_c31880 +0.5 4.2 signal transduction histidine kinase compare
PGA1_c30000 +0.5 1.5 ATP-dependent Clp protease adaptor protein ClpS compare
PGA1_c02780 +0.5 2.9 Membrane-bound metallopeptidase compare
PGA1_262p00270 +0.5 1.3 transcriptional regulator, GntR family compare
PGA1_c31850 +0.5 3.3 Uncharacterized membrane protein compare
PGA1_262p00290 +0.5 2.1 putative transcriptional regulator compare
PGA1_c31840 +0.5 3.4 N-terminal double-transmembrane domain compare
PGA1_65p00450 +0.5 1.0 UDP-glucose 6-dehydrogenase Ugd compare
PGA1_c24320 +0.5 3.0 putative capsule polysaccharide export inner-membrane protein compare
PGA1_c24830 +0.5 1.7 Protein of unknown function (DUF1150). compare
PGA1_c13080 +0.4 1.7 transcriptional regulator, GntR family compare
PGA1_c03980 +0.4 2.3 putative acetyltransferase compare
PGA1_c12120 +0.4 2.0 thioesterase domain-containing protein compare
PGA1_c33960 +0.4 2.1 MiaB-like tRNA modifying enzyme compare
PGA1_c07465 +0.4 2.3 putative dksA/traR C4-type zinc finger protein compare
PGA1_c29040 +0.4 2.3 endonuclease III compare
PGA1_c17660 +0.4 1.6 hypothetical protein compare
PGA1_262p01290 +0.4 1.9 transcriptional regulator, AraC family compare
PGA1_262p01710 +0.4 1.3 putative glutathione transport system permease protein compare
PGA1_c11220 +0.4 3.3 Predicted transcriptional regulators compare
PGA1_c05370 +0.4 3.8 polyketide synthase compare
PGA1_c05380 +0.4 2.8 hypothetical protein compare
PGA1_c35270 +0.4 1.4 Uncharacterized conserved small protein compare
PGA1_c32950 +0.4 2.7 tRNA pseudouridine synthase B compare
PGA1_c23470 +0.4 1.1 transcriptional regulator, MarR family compare
PGA1_c10270 +0.4 2.5 hypothetical protein compare
PGA1_c22480 +0.4 2.0 hypothetical protein compare
PGA1_c11470 +0.4 1.0 acetyltransferase domain-containing protein compare
PGA1_c34560 +0.4 3.2 ABC-type phosphate transport system, periplasmic component compare
PGA1_262p02130 +0.4 2.1 response regulator receiver compare
PGA1_c21060 +0.4 1.5 cold shock protein CspA compare
PGA1_c11710 +0.4 1.8 transcriptional regulator, LysR family compare
PGA1_c11970 +0.4 2.2 Sporulation related domain. compare
PGA1_c06650 +0.4 1.3 transcriptional regulator, GntR family compare
PGA1_c19790 +0.4 1.1 putative DNA polymerase III chi subunit, holC compare
PGA1_c19100 +0.4 0.9 hypothetical protein compare
PGA1_c13510 +0.4 0.8 hypothetical protein compare
PGA1_c15200 +0.4 1.0 ATP-dependent reduction of co(II)balamin (RamA-like) (EC:2.1.1.13) (from data) compare
PGA1_c35770 +0.4 0.7 putative flagella basal body P-ring formation protein FlgA compare
PGA1_c27660 +0.4 1.3 hypothetical protein compare
PGA1_c02230 +0.4 2.3 hypothetical protein compare
PGA1_c19690 +0.4 1.3 Protein of unknown function (DUF2892). compare
PGA1_262p00620 +0.4 1.8 hypothetical protein compare
PGA1_262p00560 +0.4 1.3 uracil DNA glycosylase-like protein compare
PGA1_c31930 +0.4 2.9 putative transporter, MFS family compare
PGA1_c34230 +0.4 1.9 putative HTH-type transcriptional regulator, AraC family compare
PGA1_c22890 +0.4 1.3 putative type IV secretion system protein VirB8 compare
PGA1_262p01630 +0.4 0.7 hypothetical protein compare
PGA1_c16120 +0.4 1.0 hypothetical protein compare
PGA1_c01260 +0.4 0.7 putative cobalamin adenosyltransferase compare
PGA1_c00400 +0.4 1.7 Protein of unknown function (DUF2783). compare
PGA1_c22080 +0.4 1.5 RNA polymerase I-specific transcription initiation factor Rrn7. compare
PGA1_c18970 +0.4 2.1 hypothetical protein compare
PGA1_c23420 +0.4 3.2 Domain of unknown function. compare
PGA1_c07650 +0.4 2.7 hypothetical protein compare
PGA1_c31830 +0.4 2.1 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) compare
PGA1_c18560 +0.4 1.3 hypothetical protein compare
PGA1_c26350 +0.4 2.1 Uncharacterized protein conserved in bacteria compare
PGA1_c24110 +0.4 1.5 hypothetical protein compare
PGA1_c17870 +0.4 1.1 hypothetical protein compare
PGA1_c21210 +0.4 1.7 putative lactoylglutathione lyase compare
PGA1_c09250 +0.4 1.9 Protein of unknown function (DUF2867). compare
PGA1_262p02370 +0.4 1.5 putative histidine transport system permease protein HisQ compare
PGA1_c14910 +0.4 1.0 hypothetical protein compare
PGA1_c08810 +0.4 1.7 hypothetical protein compare
PGA1_262p00740 +0.4 1.7 putative peptidase, family M20/M25/M40 compare
PGA1_c29440 +0.4 2.0 hypothetical protein compare
PGA1_c00610 +0.4 0.5 acetyltransferase, GNAT family compare
PGA1_c05260 +0.4 2.8 exopolysaccharide production protein ExoY-like protein compare
PGA1_78p00060 +0.4 0.7 Uncharacterized protein conserved in bacteria compare
PGA1_c29510 +0.4 2.3 Sulfotransferase family. compare
PGA1_c01100 +0.4 0.9 Heat shock protein compare
PGA1_c17020 +0.4 1.1 Protein of unknown function (DUF3154). compare
PGA1_c14130 +0.4 1.4 transglycolase-like protein compare
PGA1_c07600 +0.4 2.3 transcriptional regulator, AsnC / lrp family compare
PGA1_65p00390 +0.4 1.4 UDP-galactopyranose mutase Glf compare
PGA1_c19980 +0.3 1.3 hypothetical protein compare
PGA1_c36400 +0.3 1.8 hypothetical protein compare
PGA1_c11410 +0.3 1.7 putative integral membrane protein compare
PGA1_c14880 +0.3 1.5 putative 3-hydroxyisobutyrate dehydrogenase compare
PGA1_262p00170 +0.3 1.7 Predicted branched-chain amino acid permease (azaleucine resistance) compare
PGA1_262p00840 +0.3 1.6 hypothetical protein compare
PGA1_c24650 +0.3 1.7 NADPH-dependent FMN reductases compare
PGA1_c20530 +0.3 1.7 putative transcriptional regulator compare
PGA1_c34900 +0.3 2.6 threonine dehydratase biosynthetic compare
PGA1_c18580 +0.3 1.1 hypothetical protein compare
PGA1_c22490 +0.3 1.0 hypothetical protein compare
PGA1_c21950 +0.3 1.7 putative N-acetylmuramoyl-L-alanine amidase AmiD compare
PGA1_c05280 +0.3 2.1 hypothetical protein compare
PGA1_c15420 +0.3 1.1 Yip1 domain. compare
PGA1_c12350 +0.3 2.2 acetolactate synthase, catabolic compare
PGA1_262p00720 +0.3 0.8 serine/threonine-protein kinase RsbT-like protein compare
PGA1_262p00920 +0.3 1.1 Membrane proteins related to metalloendopeptidases compare
PGA1_c18060 +0.3 2.0 hypothetical protein compare
PGA1_c25770 +0.3 2.1 Predicted transcription regulator, contains HTH domain (MarR family) compare
PGA1_c34280 +0.3 1.2 peptide methionine sulfoxide reductase MsrB compare
PGA1_c31230 +0.3 0.8 hypothetical protein compare
PGA1_c03250 +0.3 1.3 molybdopterin-guanine dinucleotide biosynthesis protein B compare
PGA1_262p01300 +0.3 0.9 Cupin domain. compare
PGA1_c24880 +0.3 1.8 Metal-dependent hydrolase involved in phosphonate metabolism compare
PGA1_c17790 +0.3 0.9 putative gene transfer agent protein compare
PGA1_c10470 +0.3 0.3 hypothetical protein compare
PGA1_c24400 +0.3 1.6 hypothetical protein compare
PGA1_c10580 +0.3 1.8 ribonuclease J 1 compare
PGA1_c34290 +0.3 0.7 peptide methionine sulfoxide reductase MsrA compare
PGA1_c04330 +0.3 1.9 hypothetical protein compare
PGA1_c05310 +0.3 2.3 putative glycosyl transferase compare
PGA1_c26950 +0.3 1.0 putative exopolysaccharide synthesis protein ExoD compare


Specific Phenotypes

None in this experiment

For Phaeobacter inhibens DSM 17395 in stress experiments

For stress Aluminum chloride hydrate across organisms