Experiment set6IT014 for Desulfovibrio vulgaris Hildenborough JW710

Compare to:

Formate/Acetate-Sulfite (60/30-40 mM) + 0.1% Yeast Extract

200 most detrimental genes:

  gene name fitness t score description  
DVU2236 +2.4 1.3 hypothetical protein (TIGR) compare
DVU2510 +1.6 1.5 penicillin-binding protein (TIGR) compare
DVU2290 +1.1 0.9 hydrogenase, CooU subunit, putative (TIGR) compare
DVU1242 vacJhomolog +1.1 1.3 vacJ lipoprotein, putative (TIGR) compare
DVU2012 +1.0 1.1 hypothetical protein (TIGR) compare
DVU0556 +0.9 0.5 ISDvu3, transposase OrfA (TIGR) compare
DVU1589 +0.9 3.6 hypothetical protein (TIGR) compare
DVU0459 +0.8 0.5 hypothetical protein (TIGR) compare
DVU1652 hit +0.8 2.9 HIT family protein (TIGR) compare
DVU0533 hmcD +0.8 1.3 HmcD, 5.8 kd protein in hmc operon (voordouw) compare
DVU3277 +0.8 0.7 hypothetical protein (TIGR) compare
DVU2332 proC +0.8 1.6 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) compare
DVU1518 +0.8 2.4 transcriptional regulator cI, truncation (TIGR) compare
DVU0047 +0.8 4.3 flagellar protein FliL (TIGR) compare
DVU2692 +0.7 0.5 conserved domain protein (TIGR) compare
DORF46408 +0.7 1.8 no description compare
DVU3035 +0.7 5.1 methyl-accepting chemotaxis protein, putative (TIGR) compare
DVU2956 flrA +0.7 1.0 sigma-54 dependent transcriptional regulator (TIGR) compare
DVU1908 pdxJ +0.7 0.9 pyridoxal phosphate biosynthetic protein PdxJ (TIGR) compare
DVU2291 +0.7 1.2 carbon monoxide-induced hydrogenase CooH, putative (TIGR) compare
DORF26828 +0.7 1.9 SEED: FIG00605560: hypothetical protein compare
DVU1520 +0.7 0.4 hypothetical protein (TIGR) compare
DVU1359 +0.7 4.7 hypothetical protein (TIGR) compare
DVU0302 +0.7 3.5 chemotaxis protein CheX, putative (TIGR) compare
DORF18707 +0.7 0.7 no description compare
DORF831 +0.7 0.8 SEED: FIG00602593: hypothetical protein compare
DVU1162 +0.7 1.5 hypothetical protein (TIGR) compare
DVU2863 +0.7 0.8 hypothetical protein (TIGR) compare
DVU1600 +0.7 3.5 adenylate cyclase (TIGR) compare
DVU3339.1 kdpF +0.7 2.8 potassium-transporting ATPase, KdpF subunit (TIGR) compare
DVU1076 +0.6 1.7 conserved hypothetical protein TIGR00278 (TIGR) compare
DVU2441 hspC +0.6 1.1 heat shock protein, Hsp20 family (TIGR) compare
DVU2894 flrA +0.6 4.3 sigma-54 dependent transcriptional regulator (TIGR) compare
DVU0470 trpB-2 +0.6 2.3 tryptophan synthase, beta subunit (TIGR) compare
DVU1777 cynT +0.6 0.8 carbonic anhydrase (TIGR) compare
DVU2286 +0.6 3.2 hydrogenase, CooM subunit, putative (TIGR) compare
DVU1462 +0.6 1.5 cytochrome c assembly protein, putative (TIGR) compare
DVU2609 +0.6 3.7 chemotaxis MotB protein, putative (TIGR) compare
DORF8192 +0.6 2.0 SEED: FIG00606834: hypothetical protein compare
DVU0063 +0.6 1.0 transcriptional regulator, MarR family (TIGR) compare
DVU3026 +0.6 3.0 L-lactate permease family protein (TIGR) compare
DORF26459 +0.6 1.8 no description compare
DVU0257 +0.6 1.1 acetyltransferase, GNAT family (TIGR) compare
DVU1409 +0.5 2.3 hypothetical protein (TIGR) compare
DVU0057 +0.5 2.9 transcriptional regulator, TetR family (TIGR) compare
DVU2577 +0.5 2.8 DNA-binding response regulator, LuxR family (TIGR) compare
DVU1446 +0.5 4.2 heptosyltransferase family protein (TIGR) compare
DVU1009 +0.5 1.3 hypothetical protein (TIGR) compare
DVU2515 +0.5 2.6 HD domain protein (TIGR) compare
DVU2578 +0.5 3.6 response regulator (TIGR) compare
DVU1158 +0.5 0.7 hypothetical protein (TIGR) compare
DVU2523 +0.5 1.1 lipoprotein, putative (TIGR) compare
DVU1841 fbp +0.5 0.3 fructose-1,6-bisphosphatase (TIGR) compare
DVU2176 +0.5 0.9 hypothetical protein (TIGR) compare
DVU2420 +0.5 1.8 conserved hypothetical protein (TIGR) compare
DVU2097 +0.5 2.0 transcriptional regulator, putative (TIGR) compare
DVU2670 +0.5 2.4 hypothetical protein (TIGR) compare
DVU1729 +0.5 1.5 killer protein, putative (TIGR) compare
DVU2166 +0.5 2.2 holin (TIGR) compare
DVU0793 +0.5 3.1 hypothetical protein (TIGR) compare
DVU2558 bioB +0.5 2.1 biotin synthase (Dmitry Rodionov) compare
DVU0204 +0.5 1.9 lipoprotein, putative (TIGR) compare
DVU3032 +0.5 1.8 conserved hypothetical protein (TIGR) compare
DVU2608 motA-3 +0.5 3.4 chemotaxis protein MotA (TIGR) compare
DVU0629 +0.5 2.7 transcriptional regulator, TetR family (TIGR) compare
DVU1057 nikQ +0.5 0.9 component of nickel ABC transport system (Dmitry Rodionov) compare
DVU0646 cobI +0.5 2.0 precorrin-2 C20-methyltransferase (TIGR) compare
DVU0114 hisG +0.5 1.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
DVU2048 +0.5 0.2 hypothetical protein (TIGR) compare
DVU0903 +0.5 2.4 HD domain protein (TIGR) compare
DVU1682 +0.5 1.5 GAF domain protein (TIGR) compare
DVU3139 +0.5 0.9 bacterial extracellular solute-binding protein, family 3 (TIGR) compare
DVU2881 +0.5 0.9 phage/plasmid primase, P4 family (TIGR) compare
DVU0426 +0.5 3.4 chromate transport family protein (TIGR) compare
DVU2861 +0.5 0.9 hypothetical protein (TIGR) compare
DVU0909 +0.4 2.3 hypothetical protein (TIGR) compare
DVU3302 +0.4 2.0 hypothetical protein (TIGR) compare
DVU2024 +0.4 3.2 conserved hypothetical protein (TIGR) compare
DVU0174 +0.4 0.8 hypothetical protein (TIGR) compare
DVU2184 +0.4 1.4 DNA-binding domain, excisionase family (TIGR) compare
DVU0469 trpF-1 +0.4 2.1 N-(5-phosphoribosyl)anthranilate isomerase (TIGR) compare
DVU1403 cobO +0.4 1.7 cob(I)alamin adenosyltransferase (TIGR) compare
DVU1588 hpt +0.4 1.5 hypoxanthine phosphoribosyltransferase (TIGR) compare
DVU2512 mraW +0.4 0.8 S-adenosyl-methyltransferase MraW (TIGR) compare
DVU2325 merP +0.4 0.7 mercuric transport protein periplasmic component (TIGR) compare
DVU3175 +0.4 0.8 membrane protein, putative (TIGR) compare
DVU3089 +0.4 2.0 hypothetical protein (TIGR) compare
DVU0424 cls +0.4 3.1 cardiolipin synthetase (TIGR) compare
DVU0008 +0.4 0.3 hypothetical protein (TIGR) compare
DVU0654 +0.4 2.3 peptidase, U32 family (TIGR) compare
DVU0420 +0.4 0.5 hypothetical protein (TIGR) compare
DVU3231 +0.4 3.1 flagellar biosynthesis protein FlhF, putative (TIGR) compare
DVU1641 +0.4 1.2 conserved hypothetical protein (TIGR) compare
DVU2682 +0.4 1.2 DedA family protein (TIGR) compare
DVU0043 fliQ +0.4 3.1 flagellar biosynthetic protein FliQ (TIGR) compare
DVU1226 +0.4 1.2 hypothetical protein (TIGR) compare
DVU1274 +0.4 2.8 hypothetical protein (TIGR) compare
DVU2556 +0.4 1.8 hypothetical protein (TIGR) compare
DVU1114 +0.4 2.6 virion morphogenesis protein (TIGR) compare
DVU2704 +0.4 1.7 conserved hypothetical protein (TIGR) compare
DVU2495 +0.4 0.9 thioesterase family protein (TIGR) compare
DVU1193 radC +0.4 1.8 DNA repair protein RadC (TIGR) compare
DVU0650 +0.4 2.5 chelatase, putative (TIGR) compare
DVU1260 +0.4 2.2 outer membrane protein P1, putative (TIGR) compare
DVU1449 +0.4 1.1 anti-anti-sigma factor, putative (TIGR) compare
DORF807 +0.4 0.8 no description compare
DVU0223 +0.4 0.6 conserved hypothetical protein (TIGR) compare
DVU1726 +0.4 0.5 hypothetical protein (TIGR) compare
DVU0532 hmcE +0.4 1.7 HmcE, 25.3 kd protein in hmc operon (voordouw) compare
DVU0936 +0.4 1.7 hypothetical protein (TIGR) compare
DVU2975 +0.4 2.7 hydrolase, putative (TIGR) compare
DVU0443 +0.4 2.1 exonuclease, putative (Keith Keller) compare
DVUA0109 +0.4 1.8 type III secretion system chaperone, LcrH/SycD family (TIGR) compare
DVU2419 +0.4 1.8 conserved domain protein (TIGR) compare
DVUA0052 +0.4 2.4 conserved hypothetical protein (TIGR) compare
DVU1507 +0.4 1.6 hypothetical protein (TIGR) compare
DVU2023 +0.4 2.0 hypothetical protein (TIGR) compare
DVU1961 cheW-3 +0.4 0.9 chemotaxis protein CheW (TIGR) compare
DVU2251 +0.4 1.5 DNA-binding protein (TIGR) compare
DVU0906 lipB +0.3 1.5 lipoate-protein ligase B (TIGR) compare
DVU1577 hslV +0.3 1.2 ATP-dependent protease hslV (TIGR) compare
DVU1601 +0.3 1.5 ATP-dependent Clp protease adaptor protein ClpS (TIGR) compare
DVU2915 +0.3 1.2 hypothetical protein (TIGR) compare
DVU2113 +0.3 1.4 xanthine/uracil permease family protein (TIGR) compare
DVU3217 +0.3 1.2 hypothetical protein (TIGR) compare
DVU2582 +0.3 1.7 transcriptional regulator, TetR family (TIGR) compare
DORF14945 +0.3 1.2 no description compare
DVU1487 +0.3 1.7 conserved domain protein (TIGR) compare
DVU3031 +0.3 1.1 conserved hypothetical protein (TIGR) compare
DVU0506 +0.3 1.4 DHH family protein (TIGR) compare
DVU2128 +0.3 2.4 hypothetical protein (TIGR) compare
DVU1464 +0.3 2.2 heptosyltransferase family protein (TIGR) compare
DVU2699 slt +0.3 2.0 transglycosylase SLT domain protein (TIGR) compare
DVU1373 divIVA +0.3 0.4 cell-division initiation protein DivIVA (TIGR) compare
DVU0493 +0.3 1.1 hypothetical protein (TIGR) compare
DVU2893 flgG +0.3 1.3 flagellar basal-body rod protein, putative (TIGR) compare
DVU0311 +0.3 1.5 flagellar assembly protein FliH, putative (TIGR) compare
DVU1371 +0.3 2.0 HAD-superfamily hydrolase, subfamily IA (TIGR) compare
DVU2408 +0.3 1.3 hypothetical protein (TIGR) compare
DVU0454 +0.3 1.8 hypothetical protein (TIGR) compare
DVU1247 +0.3 1.4 hypothetical protein (TIGR) compare
DVU2737 +0.3 2.1 RNA methyltransferase, TrmH family (TIGR) compare
DVU2999 +0.3 1.5 methionyl-tRNA formyltransferase, putative (TIGR) compare
DVU0253 +0.3 2.4 oxidoreductase, FAD/iron-sulfur cluster-binding domain protein (TIGR) compare
DVU1874 clpB +0.3 2.4 ATP-dependent Clp protease, ATP-binding subunit ClpB (TIGR) compare
DVUA0130 +0.3 2.0 CRISPR-associated protein, CT1134 family (TIGR) compare
DVU1475 +0.3 0.9 PhoU family protein (TIGR) compare
DORF12810 +0.3 1.3 no description compare
DVU0802 +0.3 0.3 hypothetical protein (TIGR) compare
DORF10279 +0.3 1.5 no description compare
DVU0698 rfbC +0.3 2.1 dTDP-4-dehydrorhamnose 3,5-epimerase (TIGR) compare
DVU2669 +0.3 0.8 conserved domain protein (TIGR) compare
DVU0113 hisI +0.3 0.9 phosphoribosyl-AMP cyclohydrolase (TIGR) compare
DVU1081 +0.3 2.0 iron-sulfur cluster-binding protein (TIGR) compare
DVU0592 cheW-1 +0.3 1.7 chemotaxis protein CheW (TIGR) compare
DVU3086 cobB-2 +0.3 2.3 cobyrinic acid a,c-diamide synthase (TIGR) compare
DVU1135 +0.3 0.9 conserved domain protein (TIGR) compare
DVU1937 +0.3 2.0 phosphonate ABC transporter, periplasmic phosphonate-binding protein, putative (TIGR) compare
DVU1916 +0.3 0.8 hypothetical protein (TIGR) compare
DVU2075 parA +0.3 0.8 ParA family protein (TIGR) compare
DVU1133 +0.3 1.1 hypothetical protein (TIGR) compare
DVU3322 +0.3 1.2 conserved domain protein (TIGR) compare
DVU1863 +0.3 2.1 flagellar synthesis regulator FleN, putative (TIGR) compare
DVU1942 +0.3 1.8 DAK2 domain/degV family protein (TIGR) compare
DVU2268 +0.3 0.7 hypothetical protein (TIGR) compare
DVU2232 +0.3 1.8 hypothetical protein (TIGR) compare
DVU1106 +0.3 2.2 hypothetical protein (TIGR) compare
DVUA0067 +0.3 1.5 membrane protein, putative (TIGR) compare
DVU3088 deaD +0.3 2.1 ATP-dependent RNA helicase, DEAD/DEAH box family (TIGR) compare
DVU1059 +0.3 1.5 aminotransferase, putative (TIGR) compare
DVU2750 cbiD +0.3 2.1 cobalamin biosynthesis protein CbiD (TIGR) compare
DVU2715 +0.3 0.9 conserved hypothetical protein (TIGR) compare
DVU2522 +0.3 1.7 hypothetical protein (TIGR) compare
DVU0486 +0.3 2.1 hypothetical protein (TIGR) compare
DVU0616 +0.3 0.7 hypothetical protein (TIGR) compare
DVU1535 +0.3 0.7 membrane protein, putative (TIGR) compare
DORF24435 +0.3 1.0 SEED: Sll1863 protein compare
DVU1948 +0.3 1.0 conserved hypothetical protein (TIGR) compare
DVU2516 +0.3 1.8 CBS domain protein (TIGR) compare
DVU0576 msrB +0.3 1.4 peptide methionine sulfoxide reductase MsrB (TIGR) compare
DVU1294 +0.3 0.7 conserved hypothetical protein (TIGR) compare
DVU2123 +0.3 1.7 membrane protein, putative (TIGR) compare
DVU0212 +0.3 0.6 conserved hypothetical protein (TIGR) compare
DVU0763 gdp +0.3 1.8 GGDEF domain protein (TIGR) compare
DVU0575 +0.3 1.1 hypothetical protein (TIGR) compare
DVU1914 +0.3 2.2 (R)-citramalate synthase (EC 2.3.3.21) (from data) compare
DORF9582 +0.3 1.3 no description compare
DVU0688 +0.3 1.9 hypothetical protein (TIGR) compare
DVU0902 +0.3 1.0 TPR domain protein (TIGR) compare
DVU2907 umuD +0.3 1.7 umuD protein (TIGR) compare
DVU0088 +0.3 1.4 Sodium/pantothenate symporter (TIGR) compare
DVU1039 +0.3 0.8 lipoprotein, putative (TIGR) compare
DVU1063 flrC +0.3 1.8 transcriptional regulatory protein (TIGR) compare
DVU0639 pomB +0.3 1.8 chemotaxis protein PomB (TIGR) compare
DVU3234 +0.3 1.2 flagellar biosynthetic protein FliR (TIGR) compare
DVU3135 mdaB +0.3 1.4 flavodoxin-like fold domain protein (TIGR) compare
DVU2081 +0.3 0.4 hypothetical protein (TIGR) compare
DVU1137 +0.3 1.1 hypothetical protein (TIGR) compare
DVU1517 +0.3 1.5 transcriptional regulator cII, putative (TIGR) compare
DORF15023 +0.3 0.8 no description compare


Specific Phenotypes

For 25 genes in this experiment

For respiratory growth Sodium Formate in Desulfovibrio vulgaris Hildenborough JW710

For respiratory growth Sodium Formate across organisms