Experiment set6IT014 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

Glycerol carbon source

200 most important genes:

  gene name fitness t score description  
H281DRAFT_05801 -7.1 -4.9 5,10-methylenetetrahydrofolate reductase (NAD(P)) compare
H281DRAFT_00120 -6.6 -4.6 sirohydrochlorin cobaltochelatase compare
H281DRAFT_06073 -6.6 -5.7 3-isopropylmalate dehydratase, small subunit compare
H281DRAFT_06067 -6.2 -15.5 tryptophan synthase, beta chain compare
H281DRAFT_06072 -6.2 -11.1 3-isopropylmalate dehydrogenase compare
H281DRAFT_00116 -6.0 -2.7 phosphoadenylylsulfate reductase (thioredoxin) compare
H281DRAFT_05621 -5.9 -4.2 glutamate synthase (NADH) small subunit compare
H281DRAFT_04610 -5.4 -17.9 Fe-S oxidoreductase compare
H281DRAFT_05714 -5.3 -5.2 anthranilate synthase, component II compare
H281DRAFT_00909 -5.2 -6.5 phosphoribosylformylglycinamidine synthase compare
H281DRAFT_06075 -5.2 -11.6 3-isopropylmalate dehydratase, large subunit compare
H281DRAFT_03926 -5.2 -11.1 phosphoserine aminotransferase apoenzyme compare
H281DRAFT_05713 -4.9 -9.9 anthranilate phosphoribosyltransferase compare
H281DRAFT_04120 -4.9 -9.9 argininosuccinate synthase compare
H281DRAFT_05620 -4.8 -19.8 glutamate synthase (NADH) large subunit compare
H281DRAFT_02214 -4.8 -17.8 homoserine O-acetyltransferase compare
H281DRAFT_02004 -4.7 -6.4 phosphoglycerate mutase compare
H281DRAFT_03925 -4.6 -8.3 chorismate mutase compare
H281DRAFT_06264 -4.5 -4.9 glutamate 5-kinase compare
H281DRAFT_05715 -4.5 -17.3 anthranilate synthase, component I compare
H281DRAFT_04553 -4.5 -5.1 ketol-acid reductoisomerase compare
H281DRAFT_00194 -4.5 -3.2 argininosuccinate lyase compare
H281DRAFT_04710 -4.4 -5.8 phosphoribosylformylglycinamidine cyclo-ligase compare
H281DRAFT_06060 -4.4 -6.9 amidophosphoribosyltransferase compare
H281DRAFT_04119 -4.3 -8.6 ornithine carbamoyltransferase compare
H281DRAFT_00117 -4.2 -10.3 sulfate adenylyltransferase subunit 2 compare
H281DRAFT_04974 -4.2 -5.6 aromatic-amino-acid transaminase compare
H281DRAFT_00118 -4.2 -7.1 sulfate adenylyltransferase subunit 1 compare
H281DRAFT_05712 -4.1 -5.2 indole-3-glycerol phosphate synthase compare
H281DRAFT_06068 -4.1 -5.5 phosphoribosylanthranilate isomerase compare
H281DRAFT_04679 -4.1 -5.1 pyrroline-5-carboxylate reductase compare
H281DRAFT_02065 -4.0 -4.2 rfaE bifunctional protein, domain II compare
H281DRAFT_04082 -3.8 -6.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
H281DRAFT_00115 -3.8 -4.8 Uncharacterized conserved protein, DUF934 family compare
H281DRAFT_06065 -3.7 -7.8 tryptophan synthase, alpha chain compare
H281DRAFT_00197 -3.6 -10.9 Phosphoenolpyruvate carboxylase, type 1 compare
H281DRAFT_01798 -3.6 -3.7 Transmembrane transcriptional regulator (anti-sigma factor RsiW) compare
H281DRAFT_06059 -3.5 -8.7 O-succinylhomoserine sulfhydrylase compare
H281DRAFT_02205 -3.4 -2.4 transcriptional regulator, TraR/DksA family compare
H281DRAFT_04229 -3.3 -9.7 glycerol kinase compare
H281DRAFT_00860 -3.3 -2.6 phosphoserine phosphatase compare
H281DRAFT_00114 -3.2 -4.4 sulfite reductase (NADPH) beta subunit compare
H281DRAFT_00286 -3.0 -3.4 transaldolase compare
H281DRAFT_02926 -3.0 -13.9 diguanylate cyclase/phosphodiesterase compare
H281DRAFT_04228 -3.0 -10.7 homodimeric glycerol 3-phosphate dehydrogenase (quinone) compare
H281DRAFT_02215 -2.8 -4.1 methionine biosynthesis protein MetW compare
H281DRAFT_05618 -2.7 -11.8 outer membrane protein compare
H281DRAFT_04278 -2.2 -9.6 6-phosphogluconate dehydratase compare
H281DRAFT_00113 -2.1 -4.1 transcriptional regulator, LysR family compare
H281DRAFT_06315 -2.1 -1.0 glyceraldehyde-3-phosphate dehydrogenase (NAD+) compare
H281DRAFT_05705 -2.1 -2.7 hypothetical protein compare
H281DRAFT_04388 -2.0 -3.1 trehalose 6-phosphatase (EC 3.1.3.12) compare
H281DRAFT_06037 -1.9 -3.5 molybdate transport system substrate-binding protein compare
H281DRAFT_02201 -1.9 -3.4 hypothetical protein compare
H281DRAFT_04075 -1.7 -9.3 formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase compare
H281DRAFT_06190 -1.7 -1.8 DNA-binding protein H-NS compare
H281DRAFT_00395 -1.7 -5.6 hydroxymethylpyrimidine synthase compare
H281DRAFT_06310 -1.5 -5.5 Barstar (barnase inhibitor) compare
H281DRAFT_04189 -1.5 -5.1 pyruvate kinase compare
H281DRAFT_04719 -1.3 -3.6 TolB protein compare
H281DRAFT_04606 -1.3 -1.6 threonine ammonia-lyase, biosynthetic, long form compare
H281DRAFT_05085 -1.3 -2.5 DNA helicase/exodeoxyribonuclease V, gamma subunit compare
H281DRAFT_00444 -1.3 -1.1 N-acetylglutamate synthase compare
H281DRAFT_01111 -1.3 -2.2 transcriptional regulator, DeoR family compare
H281DRAFT_01749 -1.2 -2.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
H281DRAFT_00842 -1.2 -5.9 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
H281DRAFT_01889 -1.2 -3.5 7-cyano-7-deazaguanine reductase compare
H281DRAFT_00841 -1.2 -2.3 hypothetical protein compare
H281DRAFT_02791 -1.2 -2.5 apolipoprotein D and lipocalin family protein compare
H281DRAFT_02036 -1.2 -4.0 Thiol-disulfide isomerase or thioredoxin compare
H281DRAFT_01993 -1.1 -6.7 cytochrome c oxidase subunit 1 compare
H281DRAFT_04070 -1.1 -5.5 nicotinate-nucleotide pyrophosphorylase [carboxylating] compare
H281DRAFT_04835 -1.1 -2.4 hypothetical protein compare
H281DRAFT_04707 -1.1 -4.4 HAD-superfamily subfamily IB hydrolase, TIGR01490 compare
H281DRAFT_02981 -1.1 -6.5 aconitase /2-methylcitrate dehydratase (trans-methylaconitate-forming) compare
H281DRAFT_06008 -1.1 -6.6 RNA polymerase, sigma 70 subunit, RpoD compare
H281DRAFT_01590 -1.1 -2.1 hypothetical protein compare
H281DRAFT_00529 -1.0 -4.0 KUP system potassium uptake protein compare
H281DRAFT_00819 -1.0 -1.4 competence protein ComEA compare
H281DRAFT_01985 -1.0 -5.5 protoheme IX farnesyltransferase compare
H281DRAFT_05074 -1.0 -4.0 protease I compare
H281DRAFT_05877 -1.0 -3.8 RND family efflux transporter, MFP subunit compare
H281DRAFT_05649 -1.0 -1.5 transcriptional regulator, BolA protein family compare
H281DRAFT_05625 -1.0 -1.9 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ compare
H281DRAFT_00658 -1.0 -2.2 transcriptional regulator, IclR family compare
H281DRAFT_03006 -1.0 -5.3 transcriptional regulator, GntR family compare
H281DRAFT_04071 -1.0 -6.4 quinolinate synthetase compare
H281DRAFT_00291 -1.0 -2.6 Cytochrome c553 compare
H281DRAFT_04399 -1.0 -2.7 hydroxyacylglutathione hydrolase compare
H281DRAFT_03931 -1.0 -2.7 phosphoglycolate phosphatase compare
H281DRAFT_02864 -1.0 -3.0 precorrin-8X methylmutase compare
H281DRAFT_01614 -1.0 -1.7 hypothetical protein compare
H281DRAFT_01153 -1.0 -2.0 hypothetical protein compare
H281DRAFT_04722 -0.9 -1.9 Cell division and transport-associated protein TolQ compare
H281DRAFT_04893 -0.9 -2.1 transcriptional regulator, LysR family compare
H281DRAFT_06127 -0.9 -2.9 hypothetical protein compare
H281DRAFT_03281 -0.9 -2.0 Glycosyltransferase compare
H281DRAFT_03440 -0.9 -1.9 PAP2 superfamily protein compare
H281DRAFT_04681 -0.9 -6.0 glycolate oxidase iron-sulfur subunit compare
H281DRAFT_05110 -0.9 -2.0 transcriptional regulator, MarR family compare
H281DRAFT_05647 -0.9 -2.8 ABC-2 type transport system ATP-binding protein compare
H281DRAFT_05092 -0.9 -2.8 hypothetical protein compare
H281DRAFT_04721 -0.9 -1.7 Cell division and transport-associated protein TolR compare
H281DRAFT_04087 -0.9 -1.3 hypothetical protein compare
H281DRAFT_02731 -0.9 -1.7 hypothetical protein compare
H281DRAFT_02368 -0.9 -4.2 two component transcriptional regulator, winged helix family compare
H281DRAFT_04356 -0.9 -1.9 anti sigma-E protein, RseA compare
H281DRAFT_04263 -0.9 -3.6 putative redox protein compare
H281DRAFT_04889 -0.8 -1.3 hypothetical protein compare
H281DRAFT_00608 -0.8 -3.4 UTP--GlnB (protein PII) uridylyltransferase, GlnD compare
H281DRAFT_05086 -0.8 -1.4 DNA helicase/exodeoxyribonuclease V, beta subunit compare
H281DRAFT_02549 -0.8 -1.6 putative oxidoreductase compare
H281DRAFT_00098 -0.8 -2.5 non-heme chloroperoxidase compare
H281DRAFT_04682 -0.8 -4.6 glycolate oxidase FAD binding subunit compare
H281DRAFT_00747 -0.8 -2.1 tRNA_Met_CAT compare
H281DRAFT_02443 -0.8 -1.3 alkylhydroperoxidase AhpD family core domain-containing protein compare
H281DRAFT_04172 -0.8 -2.2 transcriptional regulator, TetR family compare
H281DRAFT_05351 -0.8 -1.4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
H281DRAFT_01148 -0.8 -1.8 DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain compare
H281DRAFT_06266 -0.8 -3.3 putative (di)nucleoside polyphosphate hydrolase compare
H281DRAFT_01069 -0.8 -1.8 Cytosine/adenosine deaminase compare
H281DRAFT_05469 -0.8 -2.0 transcriptional regulator, IclR family compare
H281DRAFT_06581 -0.8 -2.0 NADP-dependent 3-hydroxy acid dehydrogenase YdfG compare
H281DRAFT_04069 -0.8 -6.4 L-aspartate oxidase compare
H281DRAFT_04552 -0.8 -2.0 acetolactate synthase, small subunit compare
H281DRAFT_00165 -0.8 -5.0 glucose-6-phosphate 1-dehydrogenase compare
H281DRAFT_02982 -0.8 -2.4 2-methylaconitate cis-trans isomerase compare
H281DRAFT_05286 -0.7 -1.4 transcriptional regulator, LysR family compare
H281DRAFT_01990 -0.7 -4.6 cytochrome c oxidase subunit 3 compare
H281DRAFT_04021 -0.7 -3.0 3,4-dihydroxy-2-butanone 4-phosphate synthase /GTP cyclohydrolase II compare
H281DRAFT_02512 -0.7 -1.3 LysR family transcriptional regulator, glycine cleavage system transcriptional activator compare
H281DRAFT_05815 -0.7 -3.1 5,10-methenyltetrahydrofolate synthetase compare
H281DRAFT_05545 -0.7 -1.3 NitT/TauT family transport system ATP-binding protein compare
H281DRAFT_06555 -0.7 -1.9 hypothetical protein compare
H281DRAFT_01107 -0.7 -1.3 hypothetical protein compare
H281DRAFT_05087 -0.7 -2.0 exodeoxyribonuclease V alpha subunit compare
H281DRAFT_03163 -0.7 -1.0 Protein of unknown function (DUF3348) compare
H281DRAFT_00812 -0.7 -2.0 molybdopterin molybdotransferase compare
H281DRAFT_01986 -0.7 -4.0 cytochrome c oxidase assembly protein subunit 15 compare
H281DRAFT_05601 -0.7 -2.1 hypothetical protein compare
H281DRAFT_00471 -0.7 -3.9 transcriptional regulator, IclR family compare
H281DRAFT_01101 -0.7 -1.2 Small-conductance mechanosensitive channel compare
H281DRAFT_03719 -0.7 -2.1 Zn-dependent hydrolases, including glyoxylases compare
H281DRAFT_03885 -0.7 -1.0 Protein of unknown function (DUF1656) compare
H281DRAFT_03702 -0.7 -1.1 transcriptional regulator, MarR family compare
H281DRAFT_03278 -0.7 -1.1 Threonine dehydrogenase compare
H281DRAFT_03717 -0.7 -1.5 Rhodanese-related sulfurtransferase compare
H281DRAFT_04671 -0.7 -1.7 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
H281DRAFT_06134 -0.7 -1.9 hypothetical protein compare
H281DRAFT_04064 -0.7 -2.4 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
H281DRAFT_06322 -0.6 -1.8 LPS-assembly lipoprotein compare
H281DRAFT_03667 -0.6 -2.4 phospholipid-binding protein, PBP family compare
H281DRAFT_01112 -0.6 -1.6 deoxynucleoside transporter, permease component 2 (from data) compare
H281DRAFT_02255 -0.6 -2.1 transcriptional regulator, XRE family compare
H281DRAFT_04549 -0.6 -2.7 Protein of unknown function (DUF3619) compare
H281DRAFT_02848 -0.6 -2.2 Fe-S-cluster containining protein compare
H281DRAFT_01813 -0.6 -2.5 transcriptional regulator, AraC family compare
H281DRAFT_06031 -0.6 -1.8 transcriptional regulator, MarR family compare
H281DRAFT_02137 -0.6 -2.3 type I restriction enzyme M protein compare
H281DRAFT_06394 -0.6 -1.7 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family compare
H281DRAFT_05855 -0.6 -1.4 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD compare
H281DRAFT_03701 -0.6 -2.8 Enoyl-CoA hydratase compare
H281DRAFT_00530 -0.6 -2.5 uncharacterized protein compare
H281DRAFT_03428 -0.6 -1.2 cytochrome bo3 quinol oxidase subunit 3 (EC 1.10.3.-) compare
H281DRAFT_01024 -0.6 -1.0 hypothetical protein compare
H281DRAFT_03346 -0.6 -1.2 Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family compare
H281DRAFT_05342 -0.6 -2.6 drug resistance transporter, EmrB/QacA subfamily compare
H281DRAFT_04562 -0.6 -1.4 polyribonucleotide nucleotidyltransferase compare
H281DRAFT_01299 -0.6 -1.4 methylene-tetrahydromethanopterin dehydrogenase compare
H281DRAFT_01046 -0.6 -1.5 aliphatic nitrilase compare
H281DRAFT_00327 -0.6 -1.9 amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-) compare
H281DRAFT_01836 -0.6 -1.0 hypothetical protein compare
H281DRAFT_00795 -0.6 -3.8 inorganic phosphate transporter, PiT family compare
H281DRAFT_02983 -0.6 -2.1 hypothetical protein compare
H281DRAFT_02439 -0.6 -2.6 Predicted secreted hydrolase compare
H281DRAFT_01804 -0.6 -2.7 Predicted arabinose efflux permease, MFS family compare
H281DRAFT_02410 -0.6 -2.4 glycine cleavage system H protein compare
H281DRAFT_05279 -0.6 -1.2 malonate decarboxylase beta subunit compare
H281DRAFT_04643 -0.6 -2.7 methylmalonyl-CoA epimerase compare
H281DRAFT_03733 -0.6 -1.0 carbohydrate ABC transporter ATP-binding protein, CUT1 family compare
H281DRAFT_03974 -0.6 -1.5 3-oxoacyl-[acyl-carrier-protein] synthase-1 compare
H281DRAFT_04623 -0.6 -1.8 transcriptional regulator, TetR family compare
H281DRAFT_01235 -0.6 -1.3 DNA-binding protein H-NS compare
H281DRAFT_00175 -0.6 -2.0 DNA translocase FtsK compare
H281DRAFT_04357 -0.6 -2.9 sigma E regulatory protein, MucB/RseB compare
H281DRAFT_02364 -0.6 -2.3 GMP synthase (glutamine-hydrolysing) compare
H281DRAFT_01025 -0.6 -1.0 transcriptional regulator, MarR family compare
H281DRAFT_04683 -0.6 -3.9 glycolate oxidase compare
H281DRAFT_00650 -0.6 -1.9 transcriptional regulator, DeoR family compare
H281DRAFT_04727 -0.6 -2.1 transcriptional repressor NrdR compare
H281DRAFT_03252 -0.6 -1.2 2,4-dihydroxyhept-2-enedioate aldolase (EC 4.1.2.-) compare
H281DRAFT_03345 -0.6 -1.3 NHL repeat-containing protein compare
H281DRAFT_05744 -0.6 -1.9 methyl-accepting chemotaxis sensory transducer with TarH sensor compare
H281DRAFT_05610 -0.6 -1.2 hypothetical protein compare
H281DRAFT_02825 -0.6 -2.2 hypothetical protein compare
H281DRAFT_01994 -0.6 -3.8 cytochrome c oxidase subunit 2 compare
H281DRAFT_04419 -0.6 -2.4 Ppx/GppA phosphatase compare
H281DRAFT_05534 -0.6 -1.2 Zn-dependent dipeptidase, dipeptidase homolog compare
H281DRAFT_06025 -0.6 -1.6 chromate transporter compare
H281DRAFT_05609 -0.6 -1.4 penicillin-binding protein 1A compare


Specific Phenotypes

None in this experiment

For Paraburkholderia bryophila 376MFSha3.1 in carbon source experiments

For carbon source Glycerol across organisms