Experiment set6IT014 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

Glycerol carbon source

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_02007 +2.3 21.3 phosphoenolpyruvate--protein phosphotransferase compare
H281DRAFT_05561 +1.4 8.7 transcriptional regulator, TetR family compare
H281DRAFT_02008 +1.3 7.6 phosphocarrier protein compare
H281DRAFT_05075 +1.2 4.6 hypothetical protein compare
H281DRAFT_01632 +1.1 9.6 LuxR family transcriptional regulator, quorum-sensing transcription factor LasR compare
H281DRAFT_04958 +1.0 4.7 glutamate racemase compare
H281DRAFT_01705 +0.9 2.3 aliphatic nitrilase compare
H281DRAFT_04845 +0.9 7.6 dolichol-phosphate mannosyltransferase compare
H281DRAFT_02931 +0.9 6.3 Uncharacterized conserved protein YodC, DUF2158 family compare
H281DRAFT_01287 +0.9 1.8 mxaK protein compare
H281DRAFT_04880 +0.8 3.0 PRC-barrel domain-containing protein compare
H281DRAFT_03227 +0.8 1.9 transcriptional regulator, LacI family compare
H281DRAFT_06220 +0.8 1.7 hypothetical protein compare
H281DRAFT_04781 +0.8 1.9 putative colanic acid biosynthesis acetyltransferase WcaF compare
H281DRAFT_01149 +0.8 1.7 two-component system, OmpR family, sensor histidine kinase QseC compare
H281DRAFT_03226 +0.8 1.8 mannose-binding protein /fructose-binding protein /ribose-binding protein compare
H281DRAFT_00315 +0.8 4.8 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_04002 +0.8 2.1 tRNA_Arg_ACG compare
H281DRAFT_00848 +0.8 0.8 ribosomal large subunit pseudouridine synthase D (EC 5.4.99.-) compare
H281DRAFT_05974 +0.8 1.9 carbon-monoxide dehydrogenase medium subunit compare
H281DRAFT_01244 +0.8 2.3 Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain compare
H281DRAFT_01321 +0.8 2.1 probable H4MPT-linked C1 transfer pathway protein compare
H281DRAFT_05667 +0.8 6.2 serine protease DegQ compare
H281DRAFT_05314 +0.7 2.6 2-hydroxy-3-oxopropionate reductase compare
H281DRAFT_06297 +0.7 1.1 L-arabinose-binding protein compare
H281DRAFT_04735 +0.7 3.9 Membrane-anchored ribosome-binding protein, inhibits growth in stationary phase, ElaB/YqjD/DUF883 family compare
H281DRAFT_04837 +0.7 6.0 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family compare
H281DRAFT_05468 +0.7 2.1 Transposase Tn5 dimerisation domain-containing protein compare
H281DRAFT_05892 +0.7 3.2 carbohydrate ABC transporter substrate-binding protein, CUT1 family compare
H281DRAFT_01436 +0.7 1.8 NTE family protein compare
H281DRAFT_01296 +0.7 4.2 PQQ-dependent dehydrogenase, methanol/ethanol family compare
H281DRAFT_00236 +0.7 3.6 sigma54 specific transcriptional regulator, Fis family compare
H281DRAFT_02490 +0.7 2.0 amidase compare
H281DRAFT_05774 +0.7 2.9 flagellar biosynthetic protein FliR compare
H281DRAFT_00316 +0.7 4.7 ADP-heptose:LPS heptosyltransferase compare
H281DRAFT_03820 +0.6 1.3 methylated-DNA-[protein]-cysteine S-methyltransferase compare
H281DRAFT_06237 +0.6 2.3 cell division-specific peptidoglycan biosynthesis regulator FtsW compare
H281DRAFT_03371 +0.6 1.5 outer membrane protein, multidrug efflux system compare
H281DRAFT_04733 +0.6 2.2 Protein of unknown function (DUF3318) compare
H281DRAFT_00320 +0.6 1.6 Uncharacterized conserved protein PhnB, glyoxalase superfamily compare
H281DRAFT_00377 +0.6 1.8 N-carbamoyl-L-amino-acid hydrolase compare
H281DRAFT_01827 +0.6 1.5 hypothetical protein compare
H281DRAFT_05438 +0.6 1.3 transcriptional regulator, IclR family compare
H281DRAFT_06079 +0.6 2.2 Uncharacterized membrane protein, DUF373 family compare
H281DRAFT_04849 +0.6 1.9 UDP-glucose 4-epimerase compare
H281DRAFT_03534 +0.6 3.8 transcriptional regulator, IclR family compare
H281DRAFT_01122 +0.6 1.8 hypothetical protein compare
H281DRAFT_01633 +0.6 1.1 hypothetical protein compare
H281DRAFT_04846 +0.6 2.0 Putative flippase GtrA (transmembrane translocase of bactoprenol-linked glucose) compare
H281DRAFT_03042 +0.6 2.4 NADP-dependent 3-hydroxy acid dehydrogenase YdfG compare
H281DRAFT_04691 +0.6 4.6 glutamate-ammonia-ligase adenylyltransferase compare
H281DRAFT_06056 +0.6 5.0 histidine kinase (EC 2.7.13.3) compare
H281DRAFT_02441 +0.6 1.3 putative ABC transport system ATP-binding protein compare
H281DRAFT_06083 +0.6 0.9 heat shock protein Hsp20 compare
H281DRAFT_03572 +0.6 1.0 Crotonobetainyl-CoA:carnitine CoA-transferase CaiB compare
H281DRAFT_03047 +0.6 1.8 protein of unknown function (DUF4148) compare
H281DRAFT_04391 +0.6 4.6 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_04535 +0.6 1.6 quaternary ammonium compound-resistance protein SugE compare
H281DRAFT_01429 +0.5 3.3 Glycosyltransferases involved in cell wall biogenesis compare
H281DRAFT_04369 +0.5 2.0 Uncharacterized conserved protein YjbJ, UPF0337 family compare
H281DRAFT_03764 +0.5 2.0 ribulose-bisphosphate carboxylase large chain compare
H281DRAFT_00064 +0.5 2.7 hypothetical protein compare
H281DRAFT_03995 +0.5 1.2 hypothetical protein compare
H281DRAFT_03873 +0.5 1.9 protein of unknown function (DUF4148) compare
H281DRAFT_03301 +0.5 2.6 oxidoreductase alpha (molybdopterin) subunit compare
H281DRAFT_04787 +0.5 1.7 polysaccharide transporter, PST family compare
H281DRAFT_00254 +0.5 4.2 DNA (cytosine-5)-methyltransferase 1 compare
H281DRAFT_04844 +0.5 4.0 Glycosyltransferase, GT2 family compare
H281DRAFT_05296 +0.5 1.7 GntR family transcriptional regulator, histidine utilization repressor compare
H281DRAFT_02058 +0.5 0.9 cholesterol transport system auxiliary component compare
H281DRAFT_05972 +0.5 1.6 conserved hypothetical protein compare
H281DRAFT_03879 +0.5 2.3 xylose ABC transporter membrane protein compare
H281DRAFT_03367 +0.5 1.2 electron transfer flavoprotein alpha subunit apoprotein compare
H281DRAFT_03292 +0.5 1.2 Mn-containing catalase compare
H281DRAFT_03835 +0.5 1.9 NitT/TauT family transport system permease protein compare
H281DRAFT_01831 +0.5 1.8 DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain compare
H281DRAFT_04654 +0.5 0.7 NAD(P) transhydrogenase subunit alpha compare
H281DRAFT_05273 +0.5 1.1 Predicted arabinose efflux permease, MFS family compare
H281DRAFT_05537 +0.5 1.0 transcriptional regulator, IclR family compare
H281DRAFT_03117 +0.5 2.0 sarcosine oxidase subunit beta compare
H281DRAFT_06017 +0.5 1.0 Exodeoxyribonuclease VII small subunit compare
H281DRAFT_01125 +0.5 1.3 protein of unknown function (DUF2760) compare
H281DRAFT_05382 +0.5 1.4 diguanylate cyclase (GGDEF) domain-containing protein compare
H281DRAFT_05899 +0.5 0.9 hypothetical protein compare
H281DRAFT_04390 +0.5 3.9 ATP-binding cassette, subfamily B compare
H281DRAFT_04482 +0.5 2.0 NAD(P)H dehydrogenase (quinone) compare
H281DRAFT_03419 +0.5 1.9 4-carboxy-4-hydroxy-2-oxoadipate aldolase (EC 4.1.3.-) compare
H281DRAFT_01257 +0.5 1.4 Catechol 2,3-dioxygenase compare
H281DRAFT_01442 +0.5 2.1 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
H281DRAFT_04997 +0.5 1.1 AraC-type DNA-binding protein compare
H281DRAFT_01071 +0.5 1.1 muconolactone delta-isomerase (EC 5.3.3.4) compare
H281DRAFT_01546 +0.5 2.2 putative spermidine/putrescine transport system ATP-binding protein compare
H281DRAFT_04898 +0.5 3.0 Predicted Zn-dependent protease or its inactivated homolog compare
H281DRAFT_01680 +0.5 2.2 Crotonobetainyl-CoA:carnitine CoA-transferase CaiB compare
H281DRAFT_03610 +0.5 2.0 squalene-hopene/tetraprenyl-beta-curcumene cyclase compare
H281DRAFT_01636 +0.5 1.9 Nucleotide-binding universal stress protein, UspA family compare
H281DRAFT_05646 +0.5 1.8 hypothetical protein compare
H281DRAFT_00240 +0.5 3.2 two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family compare
H281DRAFT_01644 +0.5 1.3 muconolactone delta-isomerase compare
H281DRAFT_06238 +0.5 1.0 hypothetical protein compare
H281DRAFT_01595 +0.5 1.4 3-carboxy-cis,cis-muconate cycloisomerase compare
H281DRAFT_02592 +0.5 1.6 fumarase, class II compare
H281DRAFT_04941 +0.5 1.4 Uncharacterized conserved protein, Ntn-hydrolase superfamily compare
H281DRAFT_04743 +0.5 2.4 MFS transporter, DHA1 family, arabinose polymer transporter compare
H281DRAFT_06470 +0.5 2.3 Rhodanese-related sulfurtransferase compare
H281DRAFT_04179 +0.5 3.4 two-component system, OmpR family, sensor kinase compare
H281DRAFT_00976 +0.5 1.4 LysR family transcriptional regulator, glycine cleavage system transcriptional activator compare
H281DRAFT_03442 +0.5 2.7 mannose-6-phosphate isomerase, type 2 compare
H281DRAFT_01272 +0.5 2.5 hypothetical protein compare
H281DRAFT_00255 +0.5 0.8 hypothetical protein compare
H281DRAFT_03821 +0.5 1.9 serine/threonine protein kinase compare
H281DRAFT_04933 +0.5 1.2 Nitroreductase compare
H281DRAFT_01514 +0.5 1.5 ribose 1,5-bisphosphokinase compare
H281DRAFT_00559 +0.5 1.1 hypothetical protein compare
H281DRAFT_04901 +0.5 1.5 microcin C transport system permease protein compare
H281DRAFT_01207 +0.5 1.0 SPFH domain, Band 7 family protein compare
H281DRAFT_03300 +0.5 2.2 cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein compare
H281DRAFT_00269 +0.4 2.5 phenazine biosynthesis protein PhzF family compare
H281DRAFT_00940 +0.4 2.2 psiF repeat-containing protein compare
H281DRAFT_05888 +0.4 1.9 carbohydrate ABC transporter ATP-binding protein, CUT1 family compare
H281DRAFT_04883 +0.4 1.1 L-lysine exporter family protein LysE/ArgO compare
H281DRAFT_02651 +0.4 0.9 transcriptional regulator, MerR family compare
H281DRAFT_05315 +0.4 0.6 5-dehydro-4-deoxy-D-glucarate aldolase (EC 4.1.2.20) compare
H281DRAFT_05389 +0.4 0.9 protein of unknown function (DUF3331) compare
H281DRAFT_01237 +0.4 1.0 DnaJ-class molecular chaperone with C-terminal Zn finger domain compare
H281DRAFT_00757 +0.4 0.9 hypothetical protein compare
H281DRAFT_01570 +0.4 2.2 luciferase-type oxidoreductase, BA3436 family compare
H281DRAFT_04226 +0.4 0.9 hypothetical protein compare
H281DRAFT_01190 +0.4 2.1 NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase compare
H281DRAFT_05012 +0.4 1.1 hypothetical protein compare
H281DRAFT_06483 +0.4 1.7 succinylglutamate desuccinylase compare
H281DRAFT_03426 +0.4 1.7 cytochrome bo3 quinol oxidase subunit 2 (EC 1.10.3.-) compare
H281DRAFT_03304 +0.4 1.1 amidohydrolase, PncC family compare
H281DRAFT_04145 +0.4 2.4 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_01701 +0.4 1.5 hypothetical protein compare
H281DRAFT_00279 +0.4 1.8 chorismate lyase compare
H281DRAFT_05097 +0.4 1.7 putative transposase compare
H281DRAFT_01443 +0.4 1.2 RND family efflux transporter, MFP subunit compare
H281DRAFT_04661 +0.4 1.4 paraquat-inducible protein A compare
H281DRAFT_03451 +0.4 1.8 ABC-2 type transport system ATP-binding protein compare
H281DRAFT_03453 +0.4 1.8 transcriptional regulator, TetR family compare
H281DRAFT_03837 +0.4 1.0 hypothetical protein compare
H281DRAFT_02756 +0.4 1.2 Cupin domain protein compare
H281DRAFT_02429 +0.4 1.4 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_03852 +0.4 1.3 Nitroreductase compare
H281DRAFT_03853 +0.4 1.3 UTP:GlnB (protein PII) uridylyltransferase compare
H281DRAFT_00022 +0.4 2.1 Transposase IS66 family protein compare
H281DRAFT_04056 +0.4 2.7 CDP-4-dehydro-6-deoxyglucose reductase compare
H281DRAFT_03103 +0.4 2.0 hypothetical protein compare
H281DRAFT_06035 +0.4 2.4 esterase, PHB depolymerase family compare
H281DRAFT_00704 +0.4 2.1 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) compare
H281DRAFT_01981 +0.4 2.2 transcriptional regulator, MarR family with acetyltransferase activity compare
H281DRAFT_04838 +0.4 3.7 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family compare
H281DRAFT_04850 +0.4 1.2 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase compare
H281DRAFT_00340 +0.4 1.2 glutamine amidotransferase compare
H281DRAFT_01709 +0.4 1.9 hypothetical protein compare
H281DRAFT_05766 +0.4 1.0 flagellar basal-body rod protein FlgF compare
H281DRAFT_05752 +0.4 2.6 flagellar biosynthetic protein FlhB compare
H281DRAFT_02568 +0.4 1.5 Methyl-accepting chemotaxis protein compare
H281DRAFT_00469 +0.4 1.7 phasin family protein compare
H281DRAFT_04414 +0.4 2.9 phosphate ABC transporter ATP-binding protein, PhoT family compare
H281DRAFT_00671 +0.4 1.2 hypothetical protein compare
H281DRAFT_02660 +0.4 2.4 formamidase compare
H281DRAFT_01072 +0.4 1.5 muconate cycloisomerase (EC 5.5.1.1) compare
H281DRAFT_01004 +0.4 2.3 putative iron-dependent peroxidase compare
H281DRAFT_03434 +0.4 0.8 tyrosine-protein kinase Etk/Wzc compare
H281DRAFT_01414 +0.4 1.1 hypothetical protein compare
H281DRAFT_01186 +0.4 2.6 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_04645 +0.4 2.5 hypothetical protein compare
H281DRAFT_03438 +0.4 2.0 polysaccharide transporter, PST family compare
H281DRAFT_03228 +0.4 1.6 carbohydrate ABC transporter ATP-binding protein, CUT1 family compare
H281DRAFT_05767 +0.4 1.8 flagellar basal-body rod protein FlgG compare
H281DRAFT_04368 +0.4 3.0 two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family compare
H281DRAFT_01225 +0.4 1.9 L-rhamnose mutarotase compare
H281DRAFT_05430 +0.4 2.0 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family compare
H281DRAFT_01108 +0.4 0.8 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_06089 +0.4 1.2 hypothetical protein compare
H281DRAFT_05756 +0.4 1.6 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG compare
H281DRAFT_06338 +0.4 1.4 2-haloacid dehalogenase compare
H281DRAFT_00808 +0.4 1.9 Uncharacterized conserved protein, contains Mth938-like domain compare
H281DRAFT_06355 +0.4 1.6 4-oxalomesaconate hydratase compare
H281DRAFT_03748 +0.4 1.5 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_06070 +0.4 1.6 FimV C-terminal domain-containing protein compare
H281DRAFT_06474 +0.4 0.6 amino acid ABC transporter membrane protein 1, PAAT family compare
H281DRAFT_04826 +0.4 1.5 rhamnosyltransferase compare
H281DRAFT_03136 +0.4 1.8 Transglutaminase-like enzyme, putative cysteine protease compare
H281DRAFT_02216 +0.4 2.6 MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG compare
H281DRAFT_03855 +0.4 1.4 Sugar phosphate isomerase/epimerase compare
H281DRAFT_06272 +0.4 0.7 uncharacterized protein compare
H281DRAFT_01078 +0.4 1.3 dihydroxycyclohexadiene carboxylate dehydrogenase compare
H281DRAFT_03890 +0.4 1.1 Broad specificity phosphatase PhoE compare
H281DRAFT_04996 +0.4 1.5 type III secretion protein C compare
H281DRAFT_00946 +0.4 1.5 protein-tyrosine phosphatase compare
H281DRAFT_00074 +0.4 1.1 UDP-galactose 4-epimerase compare
H281DRAFT_01453 +0.4 2.3 carbohydrate ABC transporter membrane protein 1, CUT1 family compare
H281DRAFT_03732 +0.4 0.4 carbohydrate ABC transporter membrane protein 1, CUT1 family compare
H281DRAFT_05476 +0.4 1.2 Short-chain dehydrogenase compare
H281DRAFT_01021 +0.4 1.3 Nitroreductase compare
H281DRAFT_02542 +0.4 2.2 2-Methylisocitrate lyase, PEP mutase family compare
H281DRAFT_06453 +0.4 1.5 Protein required for attachment to host cells compare


Specific Phenotypes

None in this experiment

For Paraburkholderia bryophila 376MFSha3.1 in carbon source experiments

For carbon source Glycerol across organisms