Experiment set6IT012 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

Protocatechuic Acid carbon source

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_01021 +1.1 3.8 Nitroreductase compare
H281DRAFT_01311 +1.0 2.9 fructose-bisphosphate aldolase compare
H281DRAFT_06003 +1.0 3.6 Pimeloyl-ACP methyl ester carboxylesterase compare
H281DRAFT_03192 +0.9 2.8 D-methionine transport system substrate-binding protein compare
H281DRAFT_03703 +0.9 3.7 NADP-dependent 3-hydroxy acid dehydrogenase YdfG compare
H281DRAFT_05810 +0.9 5.1 Uncharacterized membrane protein compare
H281DRAFT_05476 +0.9 1.3 Short-chain dehydrogenase compare
H281DRAFT_05438 +0.9 2.6 transcriptional regulator, IclR family compare
H281DRAFT_04544 +0.8 2.1 diacylglycerol kinase (ATP) compare
H281DRAFT_03418 +0.8 1.5 3-hydroxyisobutyrate dehydrogenase compare
H281DRAFT_01108 +0.8 2.0 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_01125 +0.8 2.0 protein of unknown function (DUF2760) compare
H281DRAFT_01144 +0.8 2.4 transcriptional regulator, LysR family compare
H281DRAFT_03227 +0.8 1.5 transcriptional regulator, LacI family compare
H281DRAFT_01512 +0.8 3.8 transcriptional regulator, IclR family compare
H281DRAFT_01825 +0.8 2.6 Outer membrane protein (porin) compare
H281DRAFT_04391 +0.8 5.8 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_03572 +0.8 1.3 Crotonobetainyl-CoA:carnitine CoA-transferase CaiB compare
H281DRAFT_06547 +0.8 1.6 RNA polymerase sigma-70 factor, ECF subfamily compare
H281DRAFT_00946 +0.8 3.4 protein-tyrosine phosphatase compare
H281DRAFT_05961 +0.8 1.7 D-3-phosphoglycerate dehydrogenase compare
H281DRAFT_04002 +0.8 1.6 tRNA_Arg_ACG compare
H281DRAFT_00722 +0.8 1.7 transcriptional regulator, Crp/Fnr family compare
H281DRAFT_05540 +0.7 1.9 transcriptional regulator, LacI family compare
H281DRAFT_00339 +0.7 2.5 Uncharacterized membrane protein compare
H281DRAFT_05756 +0.7 1.8 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG compare
H281DRAFT_06120 +0.7 1.6 hypothetical protein compare
H281DRAFT_04390 +0.7 6.0 ATP-binding cassette, subfamily B compare
H281DRAFT_00690 +0.7 2.3 NADPH:quinone reductase compare
H281DRAFT_05075 +0.7 1.0 hypothetical protein compare
H281DRAFT_01028 +0.7 1.4 peptide/nickel transport system permease protein compare
H281DRAFT_03055 +0.7 3.3 hypothetical protein compare
H281DRAFT_01621 +0.7 1.4 transcriptional regulator, AraC family compare
H281DRAFT_02643 +0.7 1.6 hypothetical protein compare
H281DRAFT_03299 +0.7 2.0 cytochrome bd-I ubiquinol oxidase subunit 2 apoprotein compare
H281DRAFT_06388 +0.7 1.4 Sugar phosphate permease compare
H281DRAFT_01668 +0.7 2.2 gamma-aminobutyrate:proton symporter, AAT family compare
H281DRAFT_03306 +0.7 3.0 Cytochrome c, mono- and diheme variants compare
H281DRAFT_05811 +0.7 2.7 UPF0271 protein compare
H281DRAFT_03981 +0.7 2.7 Uncharacterized membrane protein compare
H281DRAFT_04873 +0.7 2.9 histidine ammonia-lyase compare
H281DRAFT_04673 +0.7 1.9 transcriptional regulator, LysR family compare
H281DRAFT_00050 +0.6 1.1 Uncharacterized conserved protein, DUF1330 family compare
H281DRAFT_06322 +0.6 2.8 LPS-assembly lipoprotein compare
H281DRAFT_05983 +0.6 1.7 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_01727 +0.6 2.1 Short-chain dehydrogenase compare
H281DRAFT_04406 +0.6 1.3 putative RNA-binding protein, YhbY family compare
H281DRAFT_03136 +0.6 3.2 Transglutaminase-like enzyme, putative cysteine protease compare
H281DRAFT_00487 +0.6 1.8 bacterial peptide chain release factor 2 (bRF-2) compare
H281DRAFT_05754 +0.6 2.6 flagellar biosynthesis protein FlhF compare
H281DRAFT_04880 +0.6 2.2 PRC-barrel domain-containing protein compare
H281DRAFT_04883 +0.6 1.4 L-lysine exporter family protein LysE/ArgO compare
H281DRAFT_05012 +0.6 1.4 hypothetical protein compare
H281DRAFT_05920 +0.6 2.6 transcriptional regulator, LacI family compare
H281DRAFT_06474 +0.6 1.4 amino acid ABC transporter membrane protein 1, PAAT family compare
H281DRAFT_00717 +0.6 0.9 HTH-type transcriptional regulator / antitoxin HigA compare
H281DRAFT_06367 +0.6 1.6 pilus assembly protein CpaE compare
H281DRAFT_06081 +0.6 1.2 ubiquitin-hydrolase Zn-finger-containing protein compare
H281DRAFT_05404 +0.6 2.8 amino acid ABC transporter substrate-binding protein, PAAT family compare
H281DRAFT_04654 +0.6 1.3 NAD(P) transhydrogenase subunit alpha compare
H281DRAFT_03495 +0.6 1.5 transcriptional regulator, XRE family compare
H281DRAFT_02735 +0.6 1.5 AraC family transcriptional regulator, activator of mtrCDE compare
H281DRAFT_00992 +0.6 1.4 Glycine/D-amino acid oxidase (deaminating) compare
H281DRAFT_03377 +0.6 2.7 D-threo-aldose 1-dehydrogenase compare
H281DRAFT_04440 +0.6 2.6 Predicted NTP pyrophosphohydrolase, NUDIX family compare
H281DRAFT_00254 +0.6 3.3 DNA (cytosine-5)-methyltransferase 1 compare
H281DRAFT_00313 +0.6 2.1 hypothetical protein compare
H281DRAFT_03224 +0.6 1.8 mannose ABC transporter ATP-binding protein /fructose ABC transporter ATP-binding protein /ribose ABC transporter ATP-binding protein compare
H281DRAFT_06011 +0.6 1.4 SSU ribosomal protein S21P compare
H281DRAFT_01256 +0.6 2.5 hypothetical protein compare
H281DRAFT_04007 +0.6 2.7 TIGR00255 family protein compare
H281DRAFT_03638 +0.5 1.8 Cupin domain-containing protein compare
H281DRAFT_06573 +0.5 1.9 putative addiction module antidote protein, CC2985 family compare
H281DRAFT_03838 +0.5 2.2 hypothetical protein compare
H281DRAFT_05625 +0.5 1.4 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ compare
H281DRAFT_05183 +0.5 1.6 putrescine transport system permease protein compare
H281DRAFT_01878 +0.5 2.1 membrane fusion protein, multidrug efflux system compare
H281DRAFT_03092 +0.5 2.3 Transglutaminase-like enzyme, putative cysteine protease compare
H281DRAFT_05293 +0.5 1.4 amino acid ABC transporter ATP-binding protein, PAAT family compare
H281DRAFT_00540 +0.5 1.4 tRNA/rRNA methyltransferase compare
H281DRAFT_05210 +0.5 1.1 Sugar phosphate isomerase/epimerase compare
H281DRAFT_00875 +0.5 2.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
H281DRAFT_02592 +0.5 1.4 fumarase, class II compare
H281DRAFT_01377 +0.5 1.1 hypothetical protein compare
H281DRAFT_00326 +0.5 1.2 pyrroloquinoline quinone biosynthesis protein D compare
H281DRAFT_04897 +0.5 2.2 Predicted Zn-dependent protease or its inactivated homolog compare
H281DRAFT_02577 +0.5 1.0 Sugar phosphate isomerase/epimerase compare
H281DRAFT_00245 +0.5 2.3 MFS transporter, DHA2 family, multidrug resistance protein compare
H281DRAFT_06462 +0.5 0.9 hypothetical protein compare
H281DRAFT_00715 +0.5 2.3 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_04744 +0.5 2.0 enoyl-CoA hydratase compare
H281DRAFT_02957 +0.5 0.9 Predicted xylanase/chitin deacetylase compare
H281DRAFT_00278 +0.5 1.6 Outer membrane protein OmpA compare
H281DRAFT_00676 +0.5 2.9 transcriptional regulator, LysR family compare
H281DRAFT_01204 +0.5 2.6 hypothetical protein compare
H281DRAFT_01244 +0.5 1.6 Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain compare
H281DRAFT_01463 +0.5 1.6 Steroid 5-alpha reductase family enzyme compare
H281DRAFT_01193 +0.5 2.0 4-hydroxyproline epimerase compare
H281DRAFT_02614 +0.5 1.0 L-glutamine ABC transporter membrane protein compare
H281DRAFT_00855 +0.5 1.5 SSU ribosomal protein S12P methylthiotransferase compare
H281DRAFT_03130 +0.5 1.1 transcriptional regulator, XRE family with cupin sensor compare
H281DRAFT_01388 +0.5 1.8 Uncharacterized conserved protein, DUF2252 family compare
H281DRAFT_00169 +0.5 1.9 carbohydrate ABC transporter ATP-binding protein, CUT1 family compare
H281DRAFT_04008 +0.5 1.5 RNAse PH compare
H281DRAFT_04855 +0.5 1.0 hypothetical protein compare
H281DRAFT_00885 +0.5 2.5 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ compare
H281DRAFT_02580 +0.5 1.2 SnoaL-like domain-containing protein compare
H281DRAFT_04044 +0.5 2.1 D-aminopeptidase DppA. Metallo peptidase. MEROPS family M55 compare
H281DRAFT_02743 +0.5 1.3 protein of unknown function (DUF4148) compare
H281DRAFT_05891 +0.5 2.3 carbohydrate ABC transporter membrane protein 1, CUT1 family compare
H281DRAFT_02692 +0.5 2.0 nudix-type nucleoside diphosphatase, YffH/AdpP family compare
H281DRAFT_03367 +0.5 1.8 electron transfer flavoprotein alpha subunit apoprotein compare
H281DRAFT_02741 +0.5 1.4 Enoyl-CoA hydratase/carnithine racemase compare
H281DRAFT_00653 +0.5 2.2 Enoyl-CoA hydratase/carnithine racemase compare
H281DRAFT_02880 +0.5 1.7 chemotaxis protein methyltransferase CheR compare
H281DRAFT_03157 +0.5 1.4 transcriptional regulator, LysR family compare
H281DRAFT_01413 +0.5 1.0 hypothetical protein compare
H281DRAFT_05039 +0.5 2.1 Acetyltransferase (GNAT) domain-containing protein compare
H281DRAFT_03839 +0.5 1.6 hypothetical protein compare
H281DRAFT_01981 +0.5 3.3 transcriptional regulator, MarR family with acetyltransferase activity compare
H281DRAFT_03974 +0.5 1.4 3-oxoacyl-[acyl-carrier-protein] synthase-1 compare
H281DRAFT_05430 +0.5 1.2 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family compare
H281DRAFT_00716 +0.5 1.5 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_03956 +0.5 2.5 Protein of unknown function (DUF2848) compare
H281DRAFT_00728 +0.5 1.9 Predicted N-acyltransferase, GNAT family compare
H281DRAFT_02962 +0.5 2.0 transcriptional regulator, TetR family compare
H281DRAFT_05545 +0.5 1.1 NitT/TauT family transport system ATP-binding protein compare
H281DRAFT_03968 +0.5 1.4 hypothetical protein compare
H281DRAFT_01295 +0.5 2.5 Cytochrome C oxidase, cbb3-type, subunit III compare
H281DRAFT_04713 +0.5 2.8 membrane-associated protein compare
H281DRAFT_01899 +0.5 1.7 hypothetical protein compare
H281DRAFT_05775 +0.5 2.2 flagellar biosynthetic protein FliQ compare
H281DRAFT_05928 +0.5 1.4 hypothetical protein compare
H281DRAFT_04054 +0.5 2.1 hypothetical protein compare
H281DRAFT_03478 +0.5 3.0 Predicted unusual protein kinase regulating ubiquinone biosynthesis, AarF/ABC1/UbiB family compare
H281DRAFT_01262 +0.5 1.1 putative spermidine/putrescine transport system permease protein compare
H281DRAFT_01705 +0.5 1.6 aliphatic nitrilase compare
H281DRAFT_06375 +0.5 1.3 hypothetical protein compare
H281DRAFT_06282 +0.5 2.5 [LSU ribosomal protein L11P]-lysine N-methyltransferase compare
H281DRAFT_01742 +0.5 1.7 putative oxidoreductase compare
H281DRAFT_03873 +0.5 1.3 protein of unknown function (DUF4148) compare
H281DRAFT_02966 +0.5 1.3 nucleoside-binding protein compare
H281DRAFT_05499 +0.4 1.6 putative spermidine/putrescine transport system permease protein compare
H281DRAFT_03391 +0.4 2.0 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_06136 +0.4 1.8 D-galactonate transporter compare
H281DRAFT_05882 +0.4 2.1 amino acid ABC transporter substrate-binding protein, PAAT family compare
H281DRAFT_05465 +0.4 1.7 hypothetical protein compare
H281DRAFT_05000 +0.4 1.6 ATP synthase in type III secretion protein N compare
H281DRAFT_03314 +0.4 0.9 hypothetical protein compare
H281DRAFT_04771 +0.4 2.5 transcriptional regulator, AraC family compare
H281DRAFT_00974 +0.4 2.6 L-alanine-DL-glutamate epimerase compare
H281DRAFT_04467 +0.4 3.0 UDP-glucose pyrophosphorylase compare
H281DRAFT_01580 +0.4 1.2 hypothetical protein compare
H281DRAFT_05013 +0.4 1.5 type III secretion protein D compare
H281DRAFT_01139 +0.4 1.2 2-furoyl-CoA dehydrogenase 2Fe-2S iron sulfur subunit compare
H281DRAFT_02623 +0.4 1.9 aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A compare
H281DRAFT_03277 +0.4 1.2 hypothetical protein compare
H281DRAFT_05365 +0.4 3.1 type VI secretion system secreted protein Hcp compare
H281DRAFT_01690 +0.4 1.7 ribonuclease T1 compare
H281DRAFT_06490 +0.4 0.9 hypothetical protein compare
H281DRAFT_01735 +0.4 1.5 two-component system, OmpR family, heavy metal sensor histidine kinase CusS compare
H281DRAFT_04998 +0.4 1.0 type III secretion protein T compare
H281DRAFT_03443 +0.4 1.8 Undecaprenyl-phosphate glucose phosphotransferase compare
H281DRAFT_03883 +0.4 1.4 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
H281DRAFT_06557 +0.4 1.5 hypothetical protein compare
H281DRAFT_05724 +0.4 2.4 3-oxo-5,6-didehydrosuberyl-CoA semialdehyde dehydrogenase PaaZ (EC:1.2.1.91) (from data) compare
H281DRAFT_00281 +0.4 1.6 Spermidine synthase compare
H281DRAFT_04250 +0.4 1.4 DNA-binding protein Fis compare
H281DRAFT_05462 +0.4 2.3 hypothetical protein compare
H281DRAFT_03389 +0.4 2.3 transcriptional regulator, LysR family compare
H281DRAFT_05231 +0.4 2.1 2-keto-4-pentenoate hydratase compare
H281DRAFT_05483 +0.4 1.3 protein of unknown function (DUF1840) compare
H281DRAFT_01282 +0.4 2.4 Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains compare
H281DRAFT_05078 +0.4 1.2 hypothetical protein compare
H281DRAFT_02295 +0.4 1.1 hypothetical protein compare
H281DRAFT_01890 +0.4 2.2 reactive intermediate/imine deaminase compare
H281DRAFT_04965 +0.4 3.4 hypothetical protein compare
H281DRAFT_00409 +0.4 1.0 bacterioferritin compare
H281DRAFT_03795 +0.4 1.3 hypothetical protein compare
H281DRAFT_02591 +0.4 1.2 hypothetical protein compare
H281DRAFT_03226 +0.4 0.8 mannose-binding protein /fructose-binding protein /ribose-binding protein compare
H281DRAFT_03268 +0.4 1.8 diguanylate cyclase/phosphodiesterase compare
H281DRAFT_04789 +0.4 1.9 hypothetical protein compare
H281DRAFT_05389 +0.4 0.8 protein of unknown function (DUF3331) compare
H281DRAFT_04800 +0.4 0.8 protein SCO1/2 compare
H281DRAFT_00315 +0.4 1.7 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_04786 +0.4 1.8 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_03313 +0.4 1.7 hypothetical protein compare
H281DRAFT_01148 +0.4 1.3 DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain compare
H281DRAFT_00996 +0.4 1.1 ChrR Cupin-like domain-containing protein compare
H281DRAFT_04846 +0.4 1.2 Putative flippase GtrA (transmembrane translocase of bactoprenol-linked glucose) compare
H281DRAFT_03426 +0.4 1.4 cytochrome bo3 quinol oxidase subunit 2 (EC 1.10.3.-) compare
H281DRAFT_01331 +0.4 1.4 pyrroloquinoline-quinone synthase compare
H281DRAFT_01120 +0.4 0.7 monosaccharide ABC transporter membrane protein, CUT2 family compare
H281DRAFT_03456 +0.4 0.8 transcriptional regulator, LysR family compare
H281DRAFT_00808 +0.4 1.7 Uncharacterized conserved protein, contains Mth938-like domain compare
H281DRAFT_03710 +0.4 1.2 Nitrate/nitrite transporter NarK compare
H281DRAFT_03101 +0.4 1.1 CBS domain-containing membrane protein compare
H281DRAFT_02764 +0.4 1.9 hypothetical protein compare
H281DRAFT_00973 +0.4 2.3 Sugar phosphate permease compare


Specific Phenotypes

None in this experiment

For Paraburkholderia bryophila 376MFSha3.1 in carbon source experiments

For carbon source Protocatechuic Acid across organisms