Experiment set6IT011 for Methanococcus maripaludis S2

Compare to:

formate McAA thiamine dropout

200 most important genes:

  gene name fitness t score description  
MMP_RS06975 -5.2 -4.0 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS08300 -5.2 -2.6 metal-sulfur cluster assembly factor compare
MMP_RS08720 -4.9 -3.8 4Fe-4S binding protein compare
MMP_RS03315 -4.8 -2.4 ferrous iron transport protein A compare
MMP_RS06680 -4.4 -21.4 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS06700 -4.1 -18.0 hypothetical protein compare
MMP_RS03015 -4.0 -18.3 GTP 3' 8-cyclase MoaA compare
MMP_RS05515 -3.9 -8.1 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS06685 -3.9 -21.3 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS06350 -3.8 -9.2 HesA/MoeB/ThiF family protein compare
MMP_RS06345 -3.8 -17.1 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS07635 -3.6 -13.8 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS01175 -3.6 -6.4 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS08635 -3.6 -3.3 UbiA family prenyltransferase compare
MMP_RS04775 -3.5 -5.1 adenosylhomocysteinase compare
MMP_RS06355 -3.4 -5.9 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS00300 -3.4 -1.7 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS01985 -3.4 -16.1 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS08820 -3.3 -9.7 hypothetical protein compare
MMP_RS06625 -3.2 -3.3 DNA primase compare
MMP_RS07630 -3.1 -3.9 ATP-binding cassette domain-containing protein compare
MMP_RS01500 -3.1 -4.2 CBS domain-containing protein compare
MMP_RS02010 -3.0 -12.7 PHP domain-containing protein compare
MMP_RS06715 -2.9 -18.9 cache domain-containing protein compare
MMP_RS01020 -2.8 -2.1 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS06720 -2.8 -10.4 response regulator transcription factor compare
MMP_RS08745 -2.8 -10.5 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS06400 -2.8 -3.2 4Fe-4S binding protein compare
MMP_RS01980 -2.8 -16.3 trimeric intracellular cation channel family protein compare
MMP_RS04900 -2.8 -21.3 hypothetical protein compare
MMP_RS01005 -2.8 -2.7 riboflavin synthase compare
MMP_RS00895 -2.8 -6.5 hypothetical protein compare
MMP_RS07005 -2.7 -1.3 4Fe-4S binding protein compare
MMP_RS06295 -2.7 -9.0 methanogenesis marker 14 protein compare
MMP_RS03600 -2.7 -4.7 triose-phosphate isomerase compare
MMP_RS07845 -2.7 -5.7 LL-diaminopimelate aminotransferase compare
MMP_RS00040 -2.7 -5.3 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS06630 -2.6 -2.1 UPF0058 family protein compare
MMP_RS01220 -2.6 -10.8 hypothetical protein compare
MMP_RS04605 -2.6 -6.1 cobalt ECF transporter T component CbiQ compare
MMP_RS02340 -2.5 -4.3 DNA-directed RNA polymerase subunit E'' compare
MMP_RS00115 -2.4 -14.9 radical SAM protein compare
MMP_RS00695 -2.4 -2.2 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS02280 -2.4 -1.9 DUF211 domain-containing protein compare
MMP_RS07445 -2.4 -6.7 helix-turn-helix domain-containing protein compare
MMP_RS07605 -2.4 -6.3 diadenylate cyclase compare
MMP_RS04585 -2.4 -10.2 AIR synthase related protein compare
MMP_RS04615 -2.3 -8.4 PDGLE domain-containing protein compare
MMP_RS07380 -2.3 -3.5 transcription elongation factor Spt5 compare
MMP_RS04780 -2.2 -4.5 ribonuclease P compare
MMP_RS04890 -2.2 -1.3 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS08715 -2.2 -2.9 formylmethanofuran dehydrogenase subunit B compare
MMP_RS01380 -2.2 -6.1 PHP domain-containing protein compare
MMP_RS07765 -2.2 -11.6 sodium:alanine symporter family protein compare
MMP_RS08645 -2.2 -12.5 UPF0179 family protein compare
MMP_RS03025 -2.1 -7.9 molybdenum cofactor guanylyltransferase compare
MMP_RS07600 -2.1 -3.8 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS07525 -2.0 -8.7 4Fe-4S binding protein compare
MMP_RS02195 -2.0 -4.7 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS06705 -2.0 -8.8 formate/nitrite transporter family protein compare
MMP_RS04685 -2.0 -4.9 DUF126 domain-containing protein compare
MMP_RS04620 -2.0 -10.2 cobalt transporter CbiM compare
MMP_RS00305 -1.9 -3.0 phosphoribosyl-ATP diphosphatase compare
MMP_RS01225 -1.9 -7.0 DUF5379 domain-containing protein compare
MMP_RS03580 -1.9 -5.2 signal recognition particle-docking protein FtsY compare
MMP_RS06285 -1.9 -4.2 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS00685 -1.9 -5.7 2-phospho-L-lactate guanylyltransferase compare
MMP_RS01800 -1.8 -4.8 TIGR00303 family protein compare
MMP_RS01755 -1.8 -2.6 DUF2097 domain-containing protein compare
MMP_RS04710 -1.8 -2.6 hypothetical protein compare
MMP_RS08790 -1.8 -3.6 translation initiation factor IF-2 subunit alpha compare
MMP_RS07390 -1.8 -3.0 cell division protein FtsZ compare
MMP_RS05920 -1.7 -1.1 50S ribosomal protein L37e compare
MMP_RS07735 -1.7 -1.4 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS05245 -1.7 -9.7 archaeosine biosynthesis radical SAM protein RaSEA compare
MMP_RS00110 -1.7 -2.9 hypothetical protein compare
MMP_RS06020 -1.7 -6.2 archaeoflavoprotein AfpA compare
MMP_RS01265 -1.7 -3.0 hypothetical protein compare
MMP_RS06230 -1.7 -2.8 helix-turn-helix domain-containing protein compare
MMP_RS08650 -1.6 -4.8 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS08210 -1.6 -3.8 phosphatidylglycerophosphatase A compare
MMP_RS02900 -1.6 -1.0 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS07545 -1.6 -2.1 HTH domain-containing protein compare
MMP_RS01545 -1.6 -1.8 CBS domain-containing protein compare
MMP_RS02355 -1.6 -2.7 30S ribosomal protein S27ae compare
MMP_RS02800 -1.6 -6.1 nucleotidyltransferase domain-containing protein compare
MMP_RS06925 -1.6 -3.7 ribonuclease VapC4 compare
MMP_RS00515 -1.5 -1.5 DUF655 domain-containing protein compare
MMP_RS01610 -1.5 -4.1 hypothetical protein compare
MMP_RS03960 -1.5 -1.7 hypothetical protein compare
MMP_RS07755 -1.5 -2.2 DUF555 domain-containing protein compare
MMP_RS06270 -1.5 -5.5 TIGR00300 family protein compare
MMP_RS01700 -1.4 -1.4 dihydroxy-acid dehydratase compare
MMP_RS06175 -1.4 -7.9 winged helix-turn-helix transcriptional regulator compare
MMP_RS06105 -1.4 -5.2 hydrogenase maturation peptidase HycI compare
MMP_RS02235 -1.4 -7.0 CBS domain-containing protein compare
MMP_RS05510 -1.4 -4.3 Rrf2 family transcriptional regulator compare
MMP_RS08460 -1.4 -2.7 proteasome-activating nucleotidase compare
MMP_RS02145 -1.4 -6.4 winged helix-turn-helix transcriptional regulator compare
MMP_RS01385 -1.4 -1.0 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS09020 -1.4 -1.4 hypothetical protein compare
MMP_RS02165 -1.3 -7.2 tRNA-dihydrouridine synthase compare
MMP_RS02240 -1.3 -2.9 methanogenesis marker 7 protein compare
MMP_RS03435 -1.3 -1.7 ketol-acid reductoisomerase compare
MMP_RS00620 -1.3 -7.4 4Fe-4S binding protein compare
MMP_RS07365 -1.3 -9.6 2-phosphoglycerate kinase compare
MMP_RS08435 -1.3 -2.3 Era-like GTP-binding protein compare
MMP_RS03640 -1.3 -4.1 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS02175 -1.3 -1.2 DUF1611 domain-containing protein compare
MMP_RS06475 -1.3 -4.8 FAD-dependent oxidoreductase compare
MMP_RS03445 -1.2 -1.4 methanogenesis marker 17 protein compare
MMP_RS07575 -1.2 -6.1 RNA ligase partner protein compare
MMP_RS01795 -1.2 -2.3 methanogenesis marker 6 protein compare
MMP_RS05765 -1.2 -7.3 M42 family metallopeptidase compare
MMP_RS01890 -1.2 -3.4 nucleotide sugar dehydrogenase compare
MMP_RS05845 -1.2 -1.6 tRNA-intron lyase compare
MMP_RS03035 -1.1 -2.5 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS05540 -1.1 -3.6 hypothetical protein compare
MMP_RS03250 -1.1 -3.0 MJ1244 family protein compare
MMP_RS06930 -1.1 -7.6 MBL fold metallo-hydrolase compare
MMP_RS01325 -1.1 -3.1 dihydroneopterin aldolase family protein compare
MMP_RS08200 -1.1 -8.6 archaeosine synthase subunit alpha compare
MMP_RS07685 -1.1 -5.3 TIGR01212 family radical SAM protein compare
MMP_RS03095 -1.1 -4.9 diphthine synthase compare
MMP_RS01830 -1.0 -2.2 tRNA-Val compare
MMP_RS06215 -1.0 -3.7 30S ribosomal protein S6e compare
MMP_RS04870 -1.0 -3.7 TIGR02253 family HAD-type hydrolase compare
MMP_RS06865 -1.0 -1.3 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS06915 -1.0 -5.5 metallophosphoesterase compare
MMP_RS01725 -1.0 -3.3 class I SAM-dependent methyltransferase family protein compare
MMP_RS05430 -1.0 -3.7 TIGR00288 family NYN domain-containing protein compare
MMP_RS02135 -0.9 -4.0 DUF5612 domain-containing protein compare
MMP_RS06120 -0.9 -2.1 UPF0147 family protein compare
MMP_RS06340 -0.9 -4.9 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS07710 -0.9 -3.7 cell division protein FtsZ compare
MMP_RS01365 -0.9 -3.0 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS06940 -0.9 -1.9 polyprenyl diphosphate synthase compare
MMP_RS06200 -0.9 -6.8 M24 family metallopeptidase compare
MMP_RS02345 -0.9 -2.1 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS08320 -0.9 -3.7 molybdopterin molybdotransferase MoeA compare
MMP_RS03590 -0.9 -4.8 METTL5 family protein compare
MMP_RS06895 -0.9 -1.8 selenocysteine-specific translation elongation factor compare
MMP_RS05815 -0.9 -1.8 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS07730 -0.9 -1.6 pyruvate synthase subunit beta compare
MMP_RS00130 -0.9 -1.4 nickel-responsive transcriptional regulator NikR compare
MMP_RS00295 -0.9 -2.5 gamma carbonic anhydrase family protein compare
MMP_RS03485 -0.9 -2.7 TIGR00267 family protein compare
MMP_RS01925 -0.9 -4.8 DUF1616 domain-containing protein compare
MMP_RS04955 -0.9 -3.9 DNA topoisomerase I compare
MMP_RS06885 -0.8 -2.5 50S ribosome-binding GTPase compare
MMP_RS00035 -0.8 -5.7 DUF2098 family protein compare
MMP_RS07200 -0.8 -4.1 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS07580 -0.8 -1.8 DUF356 domain-containing protein compare
MMP_RS01720 -0.8 -0.9 replication factor C large subunit compare
MMP_RS01180 -0.8 -1.2 XTP/dITP diphosphatase compare
MMP_RS01885 -0.8 -3.9 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS07775 -0.8 -4.4 alanine dehydrogenase compare
MMP_RS01905 -0.8 -5.7 glycosyltransferase compare
MMP_RS02190 -0.8 -1.7 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS00555 -0.8 -3.3 MFS transporter compare
MMP_RS07435 -0.7 -1.8 GMP synthase subunit A compare
MMP_RS03400 -0.7 -1.3 archease compare
MMP_RS04695 -0.7 -3.1 selenide water dikinase SelD compare
MMP_RS01910 -0.7 -4.9 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS06725 -0.7 -4.8 hypothetical protein compare
MMP_RS01900 -0.7 -5.4 hypothetical protein compare
MMP_RS08165 -0.7 -1.5 phosphoglycerate dehydrogenase compare
MMP_RS07385 -0.7 -1.0 protein translocase SEC61 complex subunit gamma compare
MMP_RS01915 -0.7 -5.4 DUF354 domain-containing protein compare
MMP_RS07790 -0.7 -3.1 segregation/condensation protein A compare
MMP_RS01250 -0.7 -2.5 tRNA (guanine(26)-N(2))-dimethyltransferase compare
MMP_RS03300 -0.7 -0.9 TOBE domain-containing protein compare
MMP_RS05500 -0.7 -4.3 2-isopropylmalate synthase compare
MMP_RS03210 -0.7 -4.8 tRNA guanosine(15) transglycosylase TgtA compare
MMP_RS07420 -0.6 -3.4 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS04720 -0.6 -2.2 DedA family protein compare
MMP_RS01745 -0.6 -2.9 AMP phosphorylase compare
MMP_RS00475 -0.6 -4.1 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS03700 -0.6 -3.4 sodium:proton antiporter compare
MMP_RS07180 -0.6 -3.2 DEAD/DEAH box helicase compare
MMP_RS00310 -0.6 -3.8 CBS domain-containing protein compare
MMP_RS05440 -0.6 -3.9 winged helix-turn-helix transcriptional regulator compare
MMP_RS02370 -0.6 -2.7 NifB/NifX family molybdenum-iron cluster-binding protein compare
MMP_RS01970 -0.6 -4.6 TIGR04279 domain-containing protein compare
MMP_RS08690 -0.6 -4.1 RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 compare
MMP_RS03205 -0.6 -1.3 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS00050 -0.6 -4.3 AarF/UbiB family protein compare
MMP_RS00915 -0.6 -2.9 DUF116 domain-containing protein compare
MMP_RS07425 -0.6 -2.7 GTP-binding protein compare
MMP_RS02100 -0.6 -1.6 metallophosphoesterase compare
MMP_RS08445 -0.6 -2.4 DUF2099 family protein compare
MMP_RS00850 -0.6 -2.9 TIGR01177 family methyltransferase compare
MMP_RS01920 -0.6 -4.7 glycosyltransferase family 2 protein compare
MMP_RS03220 -0.6 -2.0 RNA 2' 3'-cyclic phosphodiesterase compare
MMP_RS05285 -0.6 -2.3 MMPL family transporter compare
MMP_RS06370 -0.6 -2.1 biotin synthase BioB compare
MMP_RS03080 -0.5 -1.9 universal stress protein compare
MMP_RS00290 -0.5 -3.0 hypothetical protein compare
MMP_RS06980 -0.5 -2.6 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS02595 -0.5 -1.0 putative zinc-binding protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t1 experiments