Experiment set6IT010 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

Protocatechuic Acid carbon source

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_04880 +1.2 5.3 PRC-barrel domain-containing protein compare
H281DRAFT_04544 +1.2 3.3 diacylglycerol kinase (ATP) compare
H281DRAFT_01441 +1.2 2.9 two component heavy metal response transcriptional regulator, winged helix family compare
H281DRAFT_05345 +1.1 3.3 Fur family transcriptional regulator, zinc uptake regulator compare
H281DRAFT_05974 +1.1 2.9 carbon-monoxide dehydrogenase medium subunit compare
H281DRAFT_01584 +1.0 2.3 enamidase compare
H281DRAFT_05389 +1.0 2.2 protein of unknown function (DUF3331) compare
H281DRAFT_06500 +0.9 1.7 Lactate dehydrogenase compare
H281DRAFT_04773 +0.9 3.5 Undecaprenyl-phosphate glucose phosphotransferase compare
H281DRAFT_05323 +0.9 1.5 hypothetical protein compare
H281DRAFT_01021 +0.9 2.0 Nitroreductase compare
H281DRAFT_01599 +0.9 1.8 GTP cyclohydrolase I compare
H281DRAFT_01222 +0.9 2.1 monosaccharide ABC transporter membrane protein, CUT2 family compare
H281DRAFT_03460 +0.8 1.8 Protein of unknown function (DUF2950) compare
H281DRAFT_00658 +0.8 3.0 transcriptional regulator, IclR family compare
H281DRAFT_05915 +0.8 2.4 hypothetical protein compare
H281DRAFT_01108 +0.8 1.8 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_01480 +0.8 3.0 4-hydroxy-tetrahydrodipicolinate synthase compare
H281DRAFT_02662 +0.8 2.4 Predicted xylanase/chitin deacetylase compare
H281DRAFT_03399 +0.8 1.9 cytochrome bd-I ubiquinol oxidase subunit 2 apoprotein (EC 1.10.3.10) compare
H281DRAFT_04391 +0.8 6.0 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_00375 +0.8 1.4 benzoyl-CoA oxygenase, component A compare
H281DRAFT_02971 +0.7 2.8 Protein of unknown function (DUF3225) compare
H281DRAFT_03221 +0.7 2.1 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_01057 +0.7 3.0 monosaccharide ABC transporter ATP-binding protein, CUT2 family (TC 3.A.1.2.-) compare
H281DRAFT_05021 +0.7 0.9 Response regulator compare
H281DRAFT_01633 +0.7 4.1 hypothetical protein compare
H281DRAFT_01668 +0.7 1.8 gamma-aminobutyrate:proton symporter, AAT family compare
H281DRAFT_05041 +0.7 1.6 RNA polymerase sigma-70 factor, ECF subfamily compare
H281DRAFT_06190 +0.7 1.4 DNA-binding protein H-NS compare
H281DRAFT_03796 +0.7 2.1 protein of unknown function (DUF4148) compare
H281DRAFT_05737 +0.7 2.7 flagellar transcriptional activator FlhD compare
H281DRAFT_05537 +0.7 1.3 transcriptional regulator, IclR family compare
H281DRAFT_01148 +0.7 1.3 DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain compare
H281DRAFT_03396 +0.7 1.8 AraC-type DNA-binding protein compare
H281DRAFT_03400 +0.7 2.5 cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein (EC 1.10.3.10) compare
H281DRAFT_05421 +0.7 1.9 transcriptional regulator, TetR family compare
H281DRAFT_06197 +0.7 2.1 hypothetical protein compare
H281DRAFT_04390 +0.6 5.1 ATP-binding cassette, subfamily B compare
H281DRAFT_00051 +0.6 1.4 hypothetical protein compare
H281DRAFT_01244 +0.6 2.2 Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain compare
H281DRAFT_04846 +0.6 2.6 Putative flippase GtrA (transmembrane translocase of bactoprenol-linked glucose) compare
H281DRAFT_04611 +0.6 1.2 Diadenosine tetraphosphate (Ap4A) hydrolase compare
H281DRAFT_05967 +0.6 1.5 Cupredoxin-like domain-containing protein compare
H281DRAFT_03356 +0.6 1.4 glycerate dehydrogenase compare
H281DRAFT_06474 +0.6 1.0 amino acid ABC transporter membrane protein 1, PAAT family compare
H281DRAFT_06354 +0.6 2.4 Sugar phosphate permease compare
H281DRAFT_01050 +0.6 2.9 maleylacetate reductase compare
H281DRAFT_03147 +0.6 1.6 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA compare
H281DRAFT_04323 +0.6 1.7 Branched-chain amino acid transport protein compare
H281DRAFT_02195 +0.6 2.0 Protein of unknown function (DUF3185) compare
H281DRAFT_01474 +0.6 1.7 isoquinoline 1-oxidoreductase, alpha subunit compare
H281DRAFT_04427 +0.6 1.7 hypothetical protein compare
H281DRAFT_01467 +0.6 3.5 hypothetical protein compare
H281DRAFT_02972 +0.6 1.4 hypothetical protein compare
H281DRAFT_02284 +0.6 3.1 hypothetical protein compare
H281DRAFT_03297 +0.6 1.4 ADP-ribose pyrophosphatase YjhB, NUDIX family compare
H281DRAFT_01512 +0.6 2.5 transcriptional regulator, IclR family compare
H281DRAFT_00750 +0.6 1.5 hypothetical protein compare
H281DRAFT_04226 +0.6 1.2 hypothetical protein compare
H281DRAFT_01931 +0.6 3.1 UPF0042 nucleotide-binding protein compare
H281DRAFT_01287 +0.6 1.1 mxaK protein compare
H281DRAFT_00690 +0.6 2.2 NADPH:quinone reductase compare
H281DRAFT_05867 +0.6 1.6 uncharacterized peroxidase-related enzyme compare
H281DRAFT_01841 +0.6 1.5 Asp/Glu/hydantoin racemase compare
H281DRAFT_02735 +0.6 2.4 AraC family transcriptional regulator, activator of mtrCDE compare
H281DRAFT_00640 +0.6 2.9 putative regulator of deoxyribonate oxidation (from data) compare
H281DRAFT_03821 +0.6 2.0 serine/threonine protein kinase compare
H281DRAFT_04607 +0.6 1.6 hypothetical protein compare
H281DRAFT_05088 +0.6 1.4 hypothetical protein compare
H281DRAFT_05890 +0.5 2.0 carbohydrate ABC transporter membrane protein 2, CUT1 family compare
H281DRAFT_00050 +0.5 1.0 Uncharacterized conserved protein, DUF1330 family compare
H281DRAFT_00722 +0.5 1.3 transcriptional regulator, Crp/Fnr family compare
H281DRAFT_04661 +0.5 1.7 paraquat-inducible protein A compare
H281DRAFT_03839 +0.5 1.9 hypothetical protein compare
H281DRAFT_01493 +0.5 1.9 aspartate carbamoyltransferase compare
H281DRAFT_03822 +0.5 2.1 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_03127 +0.5 1.6 oligopeptide transport system permease protein compare
H281DRAFT_01011 +0.5 1.6 Uncharacterized membrane protein YkgB compare
H281DRAFT_03352 +0.5 1.5 Polyketide cyclase / dehydrase and lipid transport compare
H281DRAFT_02614 +0.5 1.4 L-glutamine ABC transporter membrane protein compare
H281DRAFT_02582 +0.5 1.9 Arabinose efflux permease compare
H281DRAFT_01273 +0.5 3.5 feruloyl esterase compare
H281DRAFT_03378 +0.5 2.7 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_04160 +0.5 3.3 D-sorbitol dehydrogenase (acceptor) compare
H281DRAFT_03725 +0.5 2.7 hypothetical protein compare
H281DRAFT_02276 +0.5 2.2 ParB-like nuclease domain-containing protein compare
H281DRAFT_03375 +0.5 2.0 Dimerisation domain-containing protein compare
H281DRAFT_04359 +0.5 0.9 Glutaredoxin and related proteins compare
H281DRAFT_01999 +0.5 2.8 O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain compare
H281DRAFT_00282 +0.5 1.9 Protein of unknown function (DUF3311) compare
H281DRAFT_04657 +0.5 2.8 hypothetical protein compare
H281DRAFT_05210 +0.5 1.1 Sugar phosphate isomerase/epimerase compare
H281DRAFT_06511 +0.5 1.2 reactive intermediate/imine deaminase compare
H281DRAFT_01267 +0.5 1.8 Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family compare
H281DRAFT_06477 +0.5 1.5 transcriptional regulator, AraC family compare
H281DRAFT_02102 +0.5 1.6 Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC compare
H281DRAFT_01519 +0.5 1.4 fructuronate reductase compare
H281DRAFT_02599 +0.5 2.1 hypothetical protein compare
H281DRAFT_01489 +0.5 2.6 hypothetical protein compare
H281DRAFT_03283 +0.5 2.1 Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase compare
H281DRAFT_06478 +0.5 1.4 succinylornithine aminotransferase apoenzyme compare
H281DRAFT_00015 +0.5 1.1 hypothetical protein compare
H281DRAFT_06237 +0.5 1.7 cell division-specific peptidoglycan biosynthesis regulator FtsW compare
H281DRAFT_01809 +0.5 1.3 3-dehydroquinate dehydratase compare
H281DRAFT_01377 +0.5 1.1 hypothetical protein compare
H281DRAFT_00377 +0.5 1.4 N-carbamoyl-L-amino-acid hydrolase compare
H281DRAFT_06295 +0.5 3.3 2-keto-3-deoxy-phosphogalactonate aldolase compare
H281DRAFT_00067 +0.5 2.1 transposase, IS4 family compare
H281DRAFT_00903 +0.5 1.9 hypothetical protein compare
H281DRAFT_02457 +0.5 2.6 sarcosine oxidase subunit delta compare
H281DRAFT_06010 +0.5 1.6 hypothetical protein compare
H281DRAFT_03678 +0.5 2.0 hypothetical protein compare
H281DRAFT_00254 +0.5 3.4 DNA (cytosine-5)-methyltransferase 1 compare
H281DRAFT_06272 +0.5 0.9 uncharacterized protein compare
H281DRAFT_06002 +0.5 2.6 NADPH:quinone reductase compare
H281DRAFT_02566 +0.5 1.2 Glycine/D-amino acid oxidase (deaminating) compare
H281DRAFT_03742 +0.5 2.2 Sugar phosphate permease compare
H281DRAFT_00698 +0.5 1.7 transcriptional regulator, TetR family compare
H281DRAFT_01530 +0.5 1.6 Uncharacterized membrane-anchored protein compare
H281DRAFT_01654 +0.5 1.1 3-phenylpropionate/cinnamic acid dioxygenase, small subunit compare
H281DRAFT_02556 +0.5 1.3 Outer membrane protein (porin) compare
H281DRAFT_06510 +0.5 1.2 methyl-accepting chemotaxis protein compare
H281DRAFT_03996 +0.5 2.1 chorismate mutase (EC 5.4.99.5) compare
H281DRAFT_03413 +0.5 2.6 high affinity sulphate transporter 1 compare
H281DRAFT_02742 +0.5 1.8 Acyl-CoA synthetase (NDP forming) compare
H281DRAFT_03331 +0.5 2.0 membrane-associated protein compare
H281DRAFT_01131 +0.5 1.6 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_03364 +0.5 2.5 Crotonobetainyl-CoA:carnitine CoA-transferase CaiB compare
H281DRAFT_04857 +0.5 1.2 hypothetical protein compare
H281DRAFT_05903 +0.4 1.2 osmotically inducible protein OsmC compare
H281DRAFT_03803 +0.4 1.8 alcohol dehydrogenase compare
H281DRAFT_05146 +0.4 1.3 methyltransferase, TIGR00027 family compare
H281DRAFT_03118 +0.4 1.5 NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase compare
H281DRAFT_03638 +0.4 1.5 Cupin domain-containing protein compare
H281DRAFT_03103 +0.4 1.9 hypothetical protein compare
H281DRAFT_03320 +0.4 1.9 Uncharacterized conserved protein compare
H281DRAFT_01632 +0.4 3.4 LuxR family transcriptional regulator, quorum-sensing transcription factor LasR compare
H281DRAFT_05744 +0.4 0.8 methyl-accepting chemotaxis sensory transducer with TarH sensor compare
H281DRAFT_03159 +0.4 0.9 hypothetical protein compare
H281DRAFT_02058 +0.4 0.7 cholesterol transport system auxiliary component compare
H281DRAFT_06340 +0.4 1.7 Predicted N-acetyltransferase YhbS compare
H281DRAFT_01049 +0.4 1.1 Nucleoside-diphosphate-sugar epimerase compare
H281DRAFT_01136 +0.4 2.2 5-(hydroxymethyl)furfural/furfural oxidase compare
H281DRAFT_01705 +0.4 1.0 aliphatic nitrilase compare
H281DRAFT_02600 +0.4 0.9 Undecaprenyl-diphosphatase (EC 3.6.1.27) compare
H281DRAFT_03475 +0.4 1.0 hypothetical protein compare
H281DRAFT_03383 +0.4 2.2 Aerobic-type carbon monoxide dehydrogenase, small subunit, CoxS/CutS family compare
H281DRAFT_03847 +0.4 1.2 transcriptional regulator, LysR family compare
H281DRAFT_02750 +0.4 1.0 hypothetical protein compare
H281DRAFT_03430 +0.4 2.3 hypothetical protein compare
H281DRAFT_05902 +0.4 1.1 2-Methylisocitrate lyase, PEP mutase family compare
H281DRAFT_00721 +0.4 1.2 putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase compare
H281DRAFT_04898 +0.4 1.8 Predicted Zn-dependent protease or its inactivated homolog compare
H281DRAFT_05920 +0.4 2.2 transcriptional regulator, LacI family compare
H281DRAFT_02559 +0.4 1.5 hypothetical protein compare
H281DRAFT_03813 +0.4 1.4 transcriptional regulator, GntR family compare
H281DRAFT_02055 +0.4 1.9 hypothetical protein compare
H281DRAFT_01005 +0.4 1.0 PilZ domain-containing protein compare
H281DRAFT_02576 +0.4 2.0 transcriptional regulator, IclR family compare
H281DRAFT_00875 +0.4 2.7 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
H281DRAFT_03351 +0.4 1.5 transcriptional regulator, IclR family compare
H281DRAFT_00861 +0.4 2.5 hypothetical protein compare
H281DRAFT_03802 +0.4 1.5 two-component system, OmpR family, sensor histidine kinase TctE compare
H281DRAFT_03418 +0.4 1.5 3-hydroxyisobutyrate dehydrogenase compare
H281DRAFT_02292 +0.4 2.1 amino acid ABC transporter substrate-binding protein, PAAT family compare
H281DRAFT_03956 +0.4 2.3 Protein of unknown function (DUF2848) compare
H281DRAFT_05050 +0.4 2.0 3-hydroxy-3-methylglutaryl-coenzyme A reductase compare
H281DRAFT_03199 +0.4 1.8 flagellar transcriptional activator FlhD compare
H281DRAFT_03738 +0.4 1.3 hypothetical protein compare
H281DRAFT_05767 +0.4 1.9 flagellar basal-body rod protein FlgG compare
H281DRAFT_06109 +0.4 1.4 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_05248 +0.4 0.8 hypothetical protein compare
H281DRAFT_06165 +0.4 1.2 hypothetical protein compare
H281DRAFT_02193 +0.4 1.6 hypothetical protein compare
H281DRAFT_01746 +0.4 1.3 D-3-phosphoglycerate dehydrogenase compare
H281DRAFT_03419 +0.4 1.1 4-carboxy-4-hydroxy-2-oxoadipate aldolase (EC 4.1.3.-) compare
H281DRAFT_03800 +0.4 2.2 NitT/TauT family transport system substrate-binding protein compare
H281DRAFT_06056 +0.4 3.2 histidine kinase (EC 2.7.13.3) compare
H281DRAFT_06320 +0.4 1.9 biopolymer transport protein ExbD compare
H281DRAFT_03341 +0.4 1.1 Predicted arabinose efflux permease, MFS family compare
H281DRAFT_04002 +0.4 1.1 tRNA_Arg_ACG compare
H281DRAFT_01688 +0.4 2.2 aliphatic nitrilase compare
H281DRAFT_00406 +0.4 1.3 Signal transduction histidine kinase compare
H281DRAFT_00736 +0.4 1.4 Lysophospholipase compare
H281DRAFT_00939 +0.4 2.0 hypothetical protein compare
H281DRAFT_03299 +0.4 1.2 cytochrome bd-I ubiquinol oxidase subunit 2 apoprotein compare
H281DRAFT_00451 +0.4 2.8 Rhodanese-related sulfurtransferase compare
H281DRAFT_06041 +0.4 1.7 Tautomerase enzyme compare
H281DRAFT_01687 +0.4 1.3 carbonic anhydrase compare
H281DRAFT_04177 +0.4 2.0 hypothetical protein compare
H281DRAFT_03426 +0.4 1.0 cytochrome bo3 quinol oxidase subunit 2 (EC 1.10.3.-) compare
H281DRAFT_02873 +0.4 1.0 ketopantoate reductase (EC 1.1.1.169) compare
H281DRAFT_03836 +0.4 1.6 NitT/TauT family transport system ATP-binding protein compare
H281DRAFT_03885 +0.4 0.4 Protein of unknown function (DUF1656) compare
H281DRAFT_03017 +0.4 1.6 ketopantoate reductase compare
H281DRAFT_00488 +0.4 1.6 exonuclease RecJ compare
H281DRAFT_00236 +0.4 2.7 sigma54 specific transcriptional regulator, Fis family compare
H281DRAFT_02732 +0.4 0.7 RNA polymerase sigma-70 factor, ECF subfamily compare
H281DRAFT_02598 +0.4 2.5 carboxylesterase compare


Specific Phenotypes

None in this experiment

For Paraburkholderia bryophila 376MFSha3.1 in carbon source experiments

For carbon source Protocatechuic Acid across organisms