Experiment set6IT008 for Sinorhizobium meliloti 1021
Day4 TSB
Group: tsbMedia: TSB
Culturing: Smeli_ML6, flask, Aerobic, at 30 (C), shaken=200 rpm
By: Mika on 15-March-2019
Media components: 17 g/L Tryptone, 3 g/L soytone, 2.5 g/L D-Glucose, 5 g/L Sodium Chloride, 2.5 g/L Potassium phosphate dibasic
Specific Phenotypes
For 1 genes in this experiment
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Arginine Biosynthesis extended | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Urea cycle and metabolism of amino groups
- Alanine and aspartate metabolism
- Arginine and proline metabolism
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| nitric oxide biosynthesis II (mammals) | 3 | 2 | 1 |
| canavanine biosynthesis | 4 | 2 | 1 |
| urea cycle | 5 | 4 | 1 |
| L-arginine biosynthesis I (via L-ornithine) | 9 | 9 | 1 |
| L-arginine biosynthesis III (via N-acetyl-L-citrulline) | 9 | 8 | 1 |
| L-arginine biosynthesis IV (archaea) | 9 | 4 | 1 |
| L-arginine biosynthesis II (acetyl cycle) | 10 | 10 | 1 |
| superpathway of L-citrulline metabolism | 12 | 8 | 1 |
| superpathway of arginine and polyamine biosynthesis | 17 | 14 | 1 |