Experiment set6IT007 for Sinorhizobium meliloti 1021

Compare to:

Day4 LB

200 most important genes:

  gene name fitness t score description  
SMc00602 -3.2 -8.5 excinuclease ABC subunit C compare
SMc01235 -2.9 -16.2 excinuclease ABC subunit A compare
SMc03999 -2.2 -5.9 hypothetical protein compare
SMc03967 -2.1 -0.8 Holliday junction resolvase compare
SMc04231 -2.1 -7.2 excinuclease ABC subunit B compare
SMc01206 -2.0 -0.6 queuine tRNA-ribosyltransferase compare
SMc02246 -1.8 -0.5 hypothetical protein compare
SMc00815 -1.8 -1.1 inosine 5'-monophosphate dehydrogenase compare
SMc04330 -1.7 -3.8 trimethylamine methyltransferase compare
SMc01099 -1.6 -3.6 tRNA pseudouridine synthase A compare
SMc01120 -1.6 -5.7 hypothetical protein compare
SMc04088 -1.5 -9.5 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
SMc02684 -1.4 -8.5 hydrolase/peptidase compare
SMc01183 -1.4 -2.1 LexA repressor compare
SMc04003 -1.3 -0.7 50S ribosomal protein L36 compare
SMc00320 -1.3 -4.4 ribosome-binding factor A compare
SMc02144 -1.3 -2.0 phosphate ABC transporter permease compare
SMc00412 -1.3 -1.9 orotidine 5'-phosphate decarboxylase compare
SMc02308 -1.2 -4.6 hypothetical protein compare
SMc02724 -1.2 -3.4 hypothetical protein compare
SMc02908 -1.2 -4.5 recombination protein RecR compare
SMc01819 -1.2 -5.7 transcriptional regulator compare
SM_b21177 -1.2 -3.2 phosphate uptake ABC transporter ATP-binding protein compare
SMc02561 -1.1 -2.0 hypothetical protein compare
SMc00898 -1.1 -5.7 glutathione-regulated potassium-efflux system transmembrane protein compare
SMc03981 -1.1 -3.3 phosphoglycerate kinase compare
SMc04179 -1.1 -8.4 transmembrane protein compare
SMc01852 -1.1 -4.6 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
SMc02635 -1.1 -4.1 DNA repair protein RecO compare
SMc03069 -1.1 -0.9 6-phosphogluconolactonase compare
SMc00565 -1.1 -1.3 50S ribosomal protein L9 compare
SMc02850 -1.1 -1.6 DNA polymerase I compare
SMc00760 -1.1 -2.1 recombinase A compare
SMc01881 -1.1 -1.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SMc03996 -1.0 -3.6 thiamine-phosphate pyrophosphorylase compare
SMc02863 -1.0 -2.4 recombination protein F compare
SMc02716 -1.0 -1.6 hypothetical protein compare
SMc01261 -1.0 -4.7 transporter transmembrane protein compare
SMc02683 -1.0 -1.9 hypothetical protein compare
SM_b20624 -1.0 -4.8 methylthioribose-1-phosphate isomerase compare
SMc00981 -1.0 -4.3 ferredoxin protein compare
SMc00982 -1.0 -4.7 dioxygenase compare
SMc04121 -1.0 -2.5 uracil phosphoribosyltransferase compare
SMc03979 -1.0 -3.2 glyceraldehyde-3-phosphate dehydrogenase compare
SMc01360 -0.9 -0.9 aspartate carbamoyltransferase catalytic subunit compare
SMc00789 -0.9 -3.3 peptide ABC transporter ATP-binding protein compare
SMc02121 -0.9 -2.0 ABC transporter for L-Glutamine, L-Histidine, and other L-amino acids, ATPase component (from data) compare
SM_b20948 -0.9 -1.0 glucosyltransferase compare
SMc00788 -0.9 -3.7 peptide ABC transporter permease compare
SMc01533 -0.9 -7.3 adenine deaminase compare
SMc00786 -0.9 -7.8 periplasmic dipeptide-binding protein compare
SMc04042 -0.9 -5.2 monophosphatase compare
SMc01768 -0.9 -4.3 transcriptional regulator compare
SMc00762 -0.9 -5.9 glutamine synthetase compare
SMc02849 -0.9 -5.1 2-hydroxyacid dehydrogenase compare
SMc00450 -0.9 -1.6 protoheme IX farnesyltransferase compare
SMc01613 -0.9 -3.7 ribose-5-phosphate isomerase B compare
SMc02155 -0.9 -6.4 hypothetical protein compare
SMc00787 -0.9 -5.7 peptide ABC transporter permease compare
SM_b21175 -0.9 -1.1 phosphate uptake ABC transporter permease compare
SMc03923 -0.9 -6.5 glucose-1-phosphate adenylyltransferase compare
SMc01361 -0.9 -1.8 dihydroorotase compare
SMc00691 -0.9 -2.3 site-specific tyrosine recombinase XerD compare
SMc03863 -0.9 -2.0 50S ribosomal protein L19 compare
SMc02165 -0.8 -2.7 orotate phosphoribosyltransferase compare
SMc00010 -0.8 -1.2 cytochrome C oxidase polypeptide I transmembrane protein compare
SMc00790 -0.8 -7.0 peptide ABC transporter ATP-binding protein compare
SMc00349 -0.8 -3.8 GTP-binding protein LepA compare
SMc00987 -0.8 -2.4 hypothetical protein compare
SMc00566 -0.8 -2.3 hypothetical protein compare
SMc02543 -0.8 -4.4 hypothetical protein compare
SMc01144 -0.8 -2.0 ribonuclease PH compare
SMc02520 -0.8 -2.7 glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) (from data) compare
SMc02307 -0.8 -3.3 histidinol dehydrogenase compare
SM_b21174 -0.8 -1.4 phosphate uptake ABC transporter permease compare
SMa1413 -0.8 -1.3 hypothetical protein compare
SM_b21181 -0.8 -3.1 glutaryl-CoA dehydrogenase compare
SMa2215 -0.8 -2.3 GntR family transcriptional regulator compare
SMc00103 -0.7 -5.1 alpha-halocarboxylic acid dehalogenase compare
SMc01651 -0.7 -1.2 transcriptional regulator compare
SMc00910 -0.7 -3.8 hypothetical protein compare
SMc02640 -0.7 -3.3 UDP-glucuronic acid epimerase compare
SMc02166 -0.7 -3.7 dihydroorotase compare
SMc01929 -0.7 -2.2 hypothetical protein compare
SMc00378 -0.7 -2.9 exodeoxyribonuclease VII large subunit compare
SMc02388 -0.7 -3.2 hypothetical protein compare
SM_b20880 -0.7 -4.5 ATP-dependent RNA helicase compare
SMc01842 -0.7 -2.3 methyltransferase transcription regulator protein compare
SMc01782 -0.7 -2.4 hypothetical protein compare
SMc01620 -0.7 -4.2 glycerol-3-phosphate dehydrogenase compare
SMa1220 -0.7 -5.3 cbb3-type cytochrome c oxidase subunit I compare
SMc02783 -0.7 -3.0 hypothetical protein compare
SMc00334 -0.7 -0.2 cytidylate kinase compare
SMc04383 -0.7 -2.1 putative hydrolase, required for lysine catabolism (from data) compare
SMc01178 -0.7 -1.1 multidrug transmembrane resistance signal peptide protein compare
SMc02858 -0.7 -0.7 chaperone protein DnaJ compare
SMc01119 -0.7 -1.5 hypothetical protein compare
SM_b21591 -0.7 -1.5 GntR family transcriptional regulator compare
SMc03153 -0.6 -2.0 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
SM_b20909 -0.6 -1.4 hypothetical protein compare
SMc00579 -0.6 -2.5 dimethyladenosine transferase compare
SMc01461 -0.6 -2.6 DNA helicase II protein compare
SMc02235 -0.6 -4.7 transcriptional regulator compare
SMc00035 -0.6 -3.4 hypothetical protein compare
SMc01885 -0.6 -3.6 aminopeptidase P protein compare
SMc04011 -0.6 -4.4 sigma-54-dependent transcription regulator protein compare
SM_b20294 -0.6 -1.3 transcriptional regulator NanR compare
SMc00945 -0.6 -4.0 xanthine-guanine phosphoribosyltransferase compare
SMc02656 -0.6 -2.7 hypothetical protein compare
SM_b21511 -0.6 -1.6 plasmid stability protein compare
SMc02245 -0.6 -1.7 dihydroorotate dehydrogenase 2 compare
SMc02115 -0.6 -0.6 hypothetical protein compare
SMc01207 -0.6 -0.6 S-adenosylmethionine--tRNA ribosyltransferase-isomerase compare
SMc03880 -0.6 -3.8 hypothetical protein compare
SMa1216 -0.6 -4.1 cbb3-type cytochrome c oxidase subunit II compare
SMc02978 -0.6 -2.7 hypothetical protein compare
SMc04298 -0.6 -2.6 hypothetical protein compare
SM_b20882 -0.6 -1.8 hypothetical protein compare
SMc02904 -0.6 -1.0 hypothetical protein compare
SMc03833 -0.5 -2.3 hypothetical protein compare
SMa1924 -0.5 -0.8 hypothetical protein compare
SMc01143 -0.5 -2.5 heat-inducible transcription repressor compare
SM_b20904 -0.5 -1.8 sugar uptake ABC transporter ATP-binding protein compare
SMc03839 -0.5 -1.0 hypothetical protein compare
SMc02095 -0.5 -4.4 hypothetical protein compare
SMc02620 -0.5 -3.2 hypothetical protein compare
SMc00820 -0.5 -2.7 transcriptional regulator compare
SMc02569 -0.5 -2.4 imidazole glycerol phosphate synthase subunit HisF compare
SMc00017 -0.5 -0.8 homoserine kinase compare
SM_b21120 -0.5 -2.6 hypothetical protein compare
SMc00622 -0.5 -2.5 ribonuclease D protein compare
SMc00034 -0.5 -3.5 oxidoreductase compare
SM_b20069 -0.5 -3.7 amino acid carrier protein compare
SMc00615 -0.5 -3.4 phosphoribosylaminoimidazole synthetase compare
SMc03070 -0.5 -1.9 glucose-6-phosphate 1-dehydrogenase compare
SMc00025 -0.5 -2.7 pyruvate phosphate dikinase compare
SMc04224 -0.5 -1.2 hypothetical protein compare
SMc00352 -0.5 -1.1 acetyltransferase compare
SMc04866 -0.5 -1.8 hypothetical protein compare
SMc02275 -0.5 -3.5 pyrazinamidase/nicotinamidase (Includes: pyrazinamidase, nicotinamidase) protein compare
SMc02505 -0.5 -0.8 hypothetical protein compare
SMc02844 -0.5 -0.8 transcriptional regulator compare
SMa1056 -0.5 -1.7 transcriptional regulator compare
SMa1213 -0.5 -3.4 FixP1 di-heme cytochrome c compare
SMc02173 -0.5 -1.3 hypothetical protein compare
SMc00143 -0.4 -1.1 molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
SM_b20746 -0.4 -0.8 hypothetical protein compare
SMc04269 -0.4 -1.0 hypothetical protein compare
SMa1643 -0.4 -2.3 hypothetical protein compare
SMc00298 -0.4 -1.7 methionine aminopeptidase compare
SMc03969 -0.4 -2.5 hypothetical protein compare
SMc03241 -0.4 -2.5 hypothetical protein compare
SMc01090 -0.4 -3.1 ATP-dependent RNA helicase compare
SM_b20286 -0.4 -1.9 hypothetical protein compare
SMc01952 -0.4 -3.1 transmembrane protein compare
SMc02510 -0.4 -0.5 ferric uptake regulation protein compare
SMa0674 -0.4 -1.2 hypothetical protein compare
SMa0575 -0.4 -1.6 hypothetical protein compare
SMc00099 -0.4 -1.1 alkylphosphonate uptake protein compare
SM_b20883 -0.4 -1.7 hypothetical protein compare
SMc01534 -0.4 -3.0 omega amino acid--pyruvate transaminase compare
SMc02570 -0.4 -1.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
SMc01880 -0.4 -0.5 pantoate--beta-alanine ligase compare
SMc02879 -0.4 -1.8 hypothetical protein compare
SMa1765 -0.4 -1.0 hypothetical protein compare
SMc01042 -0.4 -2.6 nitrogen regulation protein compare
SMc01146 -0.4 -2.1 deoxyribonucleotide triphosphate pyrophosphatase compare
SMc00244 -0.4 -3.0 ABC transporter permease compare
SMc00882 -0.4 -1.6 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
SMc04012 -0.4 -3.5 oligoendopeptidase F protein compare
SMc02853 -0.4 -2.2 hypothetical protein compare
SM_b21270 -0.4 -2.1 transcriptional regulator compare
SMc04130 -0.4 -2.4 hypothetical protein compare
SMc00904 -0.4 -2.2 hypothetical protein compare
SMc03128 -0.4 -1.5 ABC transporter permease compare
SMc02050 -0.4 -1.2 trigger factor compare
SMc01364 -0.4 -0.5 DNA topoisomerase I compare
SMc00403 -0.4 -2.5 NOL1/NOP2/SUN family signature protein compare
SMa1176 -0.4 -1.5 hypothetical protein compare
SMc01505 -0.4 -0.7 hypothetical protein compare
SMc02695 -0.4 -1.8 GTP-dependent nucleic acid-binding protein EngD compare
SM_b21523 -0.4 -1.5 cell division inhibitor protein compare
SMa1169 -0.4 -1.7 hypothetical protein compare
SM_b21479 -0.4 -1.3 hypothetical protein compare
SM_b21398 -0.4 -1.5 hypothetical protein compare
SMa1318 -0.4 -2.2 VirB3 type IV secretion protein compare
SMc02068 -0.4 -3.1 ABC transporter ATP-binding protein compare
SMc02077 -0.4 -1.2 exodeoxyribonuclease III protein compare
SMc02387 -0.4 -1.6 hypothetical protein compare
SM_b21698 -0.4 -2.1 hypothetical protein compare
SM_b21182 -0.4 -1.9 hypothetical protein compare
SMc01701 -0.4 -1.4 hypothetical protein compare
SMc04200 -0.4 -2.5 signal peptide protein compare
SM_b20942 -0.4 -1.9 UDP glucose 4-epimerase compare
SMc00166 -0.4 -1.0 oxidoreductase NAD protein compare
SMc03068 -0.4 -3.1 phosphogluconate dehydratase compare
SM_b21198 -0.4 -3.1 oligopeptide uptake ABC transporter permease compare
SMc01843 -0.4 -2.8 5,10-methylenetetrahydrofolate reductase compare
SMa1921 -0.4 -1.4 hypothetical protein compare
SMc00191 -0.4 -0.9 hypothetical protein compare


Specific Phenotypes

For 12 genes in this experiment