Experiment set6IT007 for Sinorhizobium meliloti 1021
Day4 LB
Group: tsbMedia: LB
Culturing: Smeli_ML6, flask, Aerobic, at 30 (C), shaken=200 rpm
By: Mika on 15-March-2019
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Specific Phenotypes
For 12 genes in this experiment
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Fructose and mannose metabolism
- Oxidative phosphorylation
- Starch and sucrose metabolism
- Nucleotide sugars metabolism
- One carbon pool by folate
- Methane metabolism
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| polyphosphate metabolism | 2 | 2 | 1 |
| D-sorbitol degradation I | 3 | 3 | 1 |
| sucrose degradation I (sucrose phosphotransferase) | 3 | 1 | 1 |
| sucrose degradation III (sucrose invertase) | 4 | 3 | 1 |
| sucrose degradation IV (sucrose phosphorylase) | 4 | 3 | 1 |
| sucrose degradation VII (sucrose 3-dehydrogenase) | 4 | 1 | 1 |
| sucrose degradation II (sucrose synthase) | 5 | 4 | 1 |
| mannitol cycle | 5 | 3 | 1 |
| reductive acetyl coenzyme A pathway I (homoacetogenic bacteria) | 10 | 4 | 1 |
| folate transformations I | 13 | 9 | 1 |
| heterolactic fermentation | 18 | 13 | 1 |
| superpathway of anaerobic sucrose degradation | 19 | 14 | 1 |
| Methanobacterium thermoautotrophicum biosynthetic metabolism | 56 | 20 | 1 |