Experiment set6IT007 for Paraburkholderia graminis OAS925

Compare to:

Cinnamic acid and Ethanol as carbon sources

200 most important genes:

  gene name fitness t score description  
ABIE53_006476 -4.7 -1.4 hypothetical protein compare
ABIE53_000306 -4.7 -1.4 general secretion pathway protein M compare
ABIE53_004876 -4.5 -2.3 hypothetical protein compare
ABIE53_004065 -4.3 -2.2 fructose transport system substrate-binding protein compare
ABIE53_001227 -4.0 -2.3 uncharacterized protein (DUF934 family) compare
ABIE53_005708 -3.7 -1.1 Cu/Ag efflux protein CusF compare
ABIE53_004255 -3.6 -1.8 hypothetical protein compare
ABIE53_004201 -3.5 -2.7 DNA-binding MarR family transcriptional regulator compare
ABIE53_005547 -3.3 -1.0 putative porin compare
ABIE53_004619 -3.2 -1.9 mannose-6-phosphate isomerase-like protein (cupin superfamily) compare
ABIE53_005351 -2.9 -2.0 nitrate reductase delta subunit compare
ABIE53_005972 -2.9 -3.1 ATP-dependent DNA ligase compare
ABIE53_003923 -2.8 -3.1 protein phosphatase compare
ABIE53_003940 -2.6 -2.0 hypothetical protein compare
ABIE53_001421 -2.5 -2.5 cytochrome c553 compare
ABIE53_001848 -2.4 -3.1 putative 3-demethylubiquinone-9 3-methyltransferase (glyoxalase superfamily) compare
ABIE53_005841 -2.4 -1.6 2-furoyl-CoA dehydrogenase FAD binding subunit compare
ABIE53_001816 -2.3 -3.6 quinol monooxygenase YgiN compare
ABIE53_000201 -2.2 -1.6 hypothetical protein compare
ABIE53_005957 -2.2 -2.0 hypothetical protein compare
ABIE53_002575 -2.1 -3.1 catechol 2,3-dioxygenase-like lactoylglutathione lyase family enzyme compare
ABIE53_005970 -2.1 -3.5 hypothetical protein compare
ABIE53_006063 -2.1 -3.0 AmiR/NasT family two-component response regulator compare
ABIE53_005342 -2.1 -1.8 cytochrome o ubiquinol oxidase subunit 3 compare
ABIE53_000805 -2.1 -3.3 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
ABIE53_001041 -2.1 -2.6 hypothetical protein compare
ABIE53_002366 -2.0 -3.2 methyl-accepting chemotaxis protein compare
ABIE53_002587 -2.0 -2.2 DHA2 family multidrug resistance protein compare
ABIE53_005866 -2.0 -1.4 AraC-like DNA-binding protein compare
ABIE53_000840 -1.9 -6.3 pyrroline-5-carboxylate reductase compare
ABIE53_000567 -1.9 -1.5 Lrp/AsnC family leucine-responsive transcriptional regulator compare
ABIE53_002794 -1.9 -4.4 PAS domain S-box-containing protein compare
ABIE53_004484 -1.9 -1.4 hypothetical protein compare
ABIE53_000598 -1.9 -5.5 thiol:disulfide interchange protein DsbA compare
ABIE53_002116 -1.8 -3.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABIE53_001140 -1.8 -2.2 dTDP-4-dehydrorhamnose reductase compare
ABIE53_005166 -1.7 -2.7 DNA-binding GntR family transcriptional regulator compare
ABIE53_005134 -1.7 -3.6 hypothetical protein compare
ABIE53_006323 -1.7 -1.0 AraC family transcriptional activator of pobA compare
ABIE53_006241 -1.7 -1.6 sulfonate transport system ATP-binding protein compare
ABIE53_002879 -1.7 -2.8 benzoyl-CoA-dihydrodiol lyase compare
ABIE53_000962 -1.7 -3.4 DNA-binding transcriptional LysR family regulator compare
ABIE53_001885 -1.7 -2.4 diketogulonate reductase-like aldo/keto reductase compare
ABIE53_001007 -1.7 -1.2 hypothetical protein compare
ABIE53_005412 -1.7 -1.7 type I restriction-modification system DNA methylase subunit compare
ABIE53_006551 -1.7 -2.7 malonate decarboxylase gamma subunit compare
ABIE53_006450 -1.7 -2.7 type VI secretion system protein ImpM compare
ABIE53_005626 -1.7 -2.8 hypothetical protein compare
ABIE53_002665 -1.6 -2.7 hypothetical protein compare
ABIE53_002640 -1.6 -1.4 enoyl-CoA hydratase/carnithine racemase compare
ABIE53_002138 -1.6 -6.2 glucose-6-phosphate isomerase compare
ABIE53_004325 -1.6 -3.1 hypothetical protein compare
ABIE53_001408 -1.6 -2.5 hypoxanthine-DNA glycosylase compare
ABIE53_004648 -1.6 -3.6 squalene synthase HpnD compare
ABIE53_004999 -1.6 -2.1 pilus assembly protein CpaE compare
ABIE53_002129 -1.6 -1.6 meso-butanediol dehydrogenase/(S,S)-butanediol dehydrogenase/diacetyl reductase compare
ABIE53_005863 -1.6 -6.8 cyclic di-GMP phosphodiesterase Gmr compare
ABIE53_003565 -1.6 -2.8 thiol-disulfide isomerase/thioredoxin compare
ABIE53_006267 -1.5 -4.3 thioredoxin reductase/bacterioferritin-associated ferredoxin compare
ABIE53_005561 -1.5 -2.1 D-methionine transport system substrate-binding protein compare
ABIE53_001382 -1.5 -2.3 pimeloyl-ACP methyl ester carboxylesterase compare
ABIE53_000974 -1.5 -3.3 dihydroxyacetone kinase-like protein compare
ABIE53_001720 -1.5 -1.1 LysR family transcriptional regulator of abg operon compare
ABIE53_004058 -1.5 -3.2 CRP-like cAMP-binding protein compare
ABIE53_002583 -1.5 -2.5 DNA-binding transcriptional LysR family regulator compare
ABIE53_000237 -1.5 -3.2 glycine cleavage system H protein compare
ABIE53_005377 -1.5 -1.4 AcrR family transcriptional regulator compare
ABIE53_006137 -1.5 -2.1 membrane dipeptidase compare
ABIE53_004890 -1.5 -2.0 hypothetical protein compare
ABIE53_000196 -1.5 -2.8 hypothetical protein compare
ABIE53_005910 -1.5 -4.1 peptide-methionine (S)-S-oxide reductase compare
ABIE53_005283 -1.4 -1.3 hypothetical protein compare
ABIE53_005230 -1.4 -2.0 homoprotocatechuate degradation regulator HpaR compare
ABIE53_002593 -1.4 -2.1 SfnB family sulfur acquisition oxidoreductase compare
ABIE53_005372 -1.4 -1.5 steroid delta-isomerase-like uncharacterized protein compare
ABIE53_005044 -1.4 -1.6 putative AcnD-accessory protein PrpF compare
ABIE53_003757 -1.4 -6.4 thiol:disulfide interchange protein DsbD compare
ABIE53_002126 -1.4 -2.5 type II secretory pathway pseudopilin PulG compare
ABIE53_004482 -1.4 -1.4 TetR/AcrR family transcriptional repressor of nem operon compare
ABIE53_002572 -1.4 -1.8 hyperosmotically inducible protein compare
ABIE53_005556 -1.4 -1.5 two-component system response regulator TctD compare
ABIE53_000650 -1.4 -5.0 thiol-disulfide isomerase/thioredoxin compare
ABIE53_005073 -1.4 -2.8 acetyl coenzyme A synthetase (ADP forming)-like protein compare
ABIE53_006163 -1.4 -1.6 transcriptional regulator GlxA family with amidase domain compare
ABIE53_003708 -1.4 -6.1 phospholipid transport system substrate-binding protein compare
ABIE53_006219 -1.3 -0.9 hypothetical protein compare
ABIE53_003445 -1.3 -4.0 succinyl-CoA synthetase beta subunit compare
ABIE53_005781 -1.3 -1.9 VIT1/CCC1 family predicted Fe2+/Mn2+ transporter compare
ABIE53_001696 -1.3 -2.0 ABC-type Fe3+-siderophore transport system permease subunit compare
ABIE53_000875 -1.3 -3.1 tRNA dimethylallyltransferase compare
ABIE53_001384 -1.3 -2.2 hypothetical protein compare
ABIE53_001976 -1.3 -1.3 hypothetical protein compare
ABIE53_002558 -1.3 -2.0 HEAT repeat protein compare
ABIE53_002306 -1.3 -0.9 hypothetical protein compare
ABIE53_002688 -1.3 -2.9 multidrug efflux system membrane fusion protein compare
ABIE53_004181 -1.3 -1.5 sarcosine oxidase subunit beta compare
ABIE53_002257 -1.3 -1.2 folate-dependent phosphoribosylglycinamide formyltransferase PurN compare
ABIE53_004023 -1.3 -1.4 hypothetical protein compare
ABIE53_001011 -1.3 -2.5 hypothetical protein compare
ABIE53_004459 -1.3 -3.1 DNA-binding MarR family transcriptional regulator compare
ABIE53_003517 -1.3 -3.8 phosphogluconate dehydratase compare
ABIE53_006060 -1.3 -2.6 DNA-binding winged helix-turn-helix (wHTH) protein/predicted ATPase compare
ABIE53_004896 -1.3 -3.9 hypothetical protein compare
ABIE53_005569 -1.2 -2.7 DNA-binding protein H-NS compare
ABIE53_003142 -1.2 -5.9 acetoin utilization deacetylase AcuC-like enzyme compare
ABIE53_003160 -1.2 -4.6 hypothetical protein compare
ABIE53_003998 -1.2 -1.7 LysR family glycine cleavage system transcriptional activator compare
ABIE53_005915 -1.2 -3.0 two-component system chemotaxis response regulator CheB compare
ABIE53_002101 -1.2 -4.4 two-component system phosphate regulon response regulator OmpR compare
ABIE53_000682 -1.2 -5.1 cytochrome c oxidase assembly protein subunit 15 compare
ABIE53_004212 -1.2 -2.7 1-phosphofructokinase compare
ABIE53_004144 -1.2 -1.4 DNA-binding NarL/FixJ family response regulator compare
ABIE53_000378 -1.2 -1.1 uncharacterized protein (TIGR00369 family) compare
ABIE53_000525 -1.2 -0.8 hypothetical protein compare
ABIE53_000427 -1.2 -2.8 uncharacterized protein YigA (DUF484 family) compare
ABIE53_001465 -1.2 -2.2 uncharacterized protein YaiI (UPF0178 family) compare
ABIE53_002579 -1.2 -1.0 glyoxylate carboligase compare
ABIE53_003962 -1.2 -2.0 carbon monoxide dehydrogenase subunit G compare
ABIE53_006550 -1.2 -1.5 malonate decarboxylase beta subunit compare
ABIE53_001650 -1.2 -1.8 hemin uptake protein HemP compare
ABIE53_002735 -1.2 -4.7 membrane protease subunit HflK compare
ABIE53_002494 -1.2 -2.5 outer membrane protein compare
ABIE53_001420 -1.2 -2.6 cytochrome c553 compare
ABIE53_001888 -1.2 -4.6 N-methylhydantoinase A compare
ABIE53_001085 -1.2 -4.7 hypothetical protein compare
ABIE53_003536 -1.2 -4.7 glyceraldehyde 3-phosphate dehydrogenase compare
ABIE53_004674 -1.2 -3.2 polyisoprenoid-binding protein YceI compare
ABIE53_001732 -1.2 -2.1 environmental stress-induced protein Ves compare
ABIE53_002626 -1.2 -2.5 AcrR family transcriptional regulator compare
ABIE53_002873 -1.2 -1.4 dihydropyrimidine dehydrogenase (NAD+) subunit PreA compare
ABIE53_004925 -1.2 -1.3 hypothetical protein compare
ABIE53_003563 -1.2 -3.5 UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase compare
ABIE53_005812 -1.2 -3.3 glutaminase compare
ABIE53_004740 -1.2 -1.5 hypothetical protein compare
ABIE53_002304 -1.1 -1.7 cytochrome c oxidase subunit I+III compare
ABIE53_004202 -1.1 -1.8 H+/Cl- antiporter ClcA/CBS domain-containing protein compare
ABIE53_002336 -1.1 -3.8 gluconate 2-dehydrogenase compare
ABIE53_001863 -1.1 -2.7 AraC-like DNA-binding protein compare
ABIE53_005298 -1.1 -1.6 hypothetical protein compare
ABIE53_001225 -1.1 -3.8 LysR family cys regulon transcriptional activator compare
ABIE53_001386 -1.1 -3.4 hypothetical protein compare
ABIE53_004034 -1.1 -1.1 hypothetical protein compare
ABIE53_002740 -1.1 -1.7 putative negative regulator of RcsB-dependent stress response compare
ABIE53_005662 -1.1 -0.7 DNA replication protein DnaC compare
ABIE53_002067 -1.1 -5.0 polyhydroxyalkanoate synthesis repressor PhaR compare
ABIE53_000061 -1.1 -3.1 methylenetetrahydrofolate reductase (NADPH) compare
ABIE53_001505 -1.1 -1.5 FixJ family two-component response regulator compare
ABIE53_003684 -1.1 -8.4 ubiquinol-cytochrome c reductase cytochrome b subunit compare
ABIE53_001326 -1.1 -1.7 putative ABC transport system ATP-binding protein compare
ABIE53_001892 -1.1 -1.8 uncharacterized protein YbjT (DUF2867 family) compare
ABIE53_003588 -1.1 -3.5 glutamate 5-kinase compare
ABIE53_003710 -1.1 -5.4 phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein compare
ABIE53_002801 -1.1 -1.6 hypothetical protein compare
ABIE53_001644 -1.1 -2.8 aromatic-amino-acid transaminase compare
ABIE53_003164 -1.1 -3.5 2-phosphoglycolate phosphatase compare
ABIE53_000795 -1.1 -3.2 MurNAc alpha-1-phosphate uridylyltransferase compare
ABIE53_004384 -1.1 -0.9 pyrroloquinoline quinone biosynthesis protein D compare
ABIE53_003685 -1.1 -5.7 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABIE53_001226 -1.1 -4.7 sulfite reductase (NADPH) hemoprotein beta-component compare
ABIE53_002292 -1.1 -2.4 p-hydroxybenzoate 3-monooxygenase compare
ABIE53_006341 -1.1 -0.7 methylglutaconyl-CoA hydratase compare
ABIE53_004851 -1.1 -3.4 uncharacterized protein (TIGR00730 family) compare
ABIE53_004675 -1.1 -2.4 AcrR family transcriptional regulator compare
ABIE53_003754 -1.1 -4.6 cbb3-type cytochrome c oxidase subunit III compare
ABIE53_005329 -1.1 -2.1 4-oxalmesaconate hydratase compare
ABIE53_002480 -1.1 -1.9 putative ubiquitin-RnfH superfamily antitoxin RatB of RatAB toxin-antitoxin module compare
ABIE53_000768 -1.1 -6.1 FAD/FMN-containing dehydrogenase/Fe-S oxidoreductase compare
ABIE53_001588 -1.1 -2.1 triosephosphate isomerase compare
ABIE53_001485 -1.1 -3.1 TetR/AcrR family tetracycline transcriptional repressor compare
ABIE53_004189 -1.1 -1.4 hypothetical protein compare
ABIE53_003988 -1.1 -1.3 small multidrug resistance pump compare
ABIE53_001320 -1.1 -2.8 hypothetical protein compare
ABIE53_001748 -1.1 -1.5 type II secretory pathway pseudopilin PulG compare
ABIE53_004265 -1.1 -1.6 branched-chain amino acid transport system ATP-binding protein compare
ABIE53_005821 -1.0 -0.6 DNA-binding MurR/RpiR family transcriptional regulator compare
ABIE53_005959 -1.0 -2.0 hypothetical protein compare
ABIE53_005390 -1.0 -1.2 hypothetical protein compare
ABIE53_003985 -1.0 -1.6 LacI family transcriptional regulator compare
ABIE53_006337 -1.0 -1.7 hypothetical protein compare
ABIE53_001416 -1.0 -4.0 transaldolase compare
ABIE53_006433 -1.0 -2.2 DeoR/GlpR family transcriptional regulator of sugar metabolism compare
ABIE53_000678 -1.0 -4.0 cytochrome c oxidase subunit 3 compare
ABIE53_002515 -1.0 -3.0 hypothetical protein compare
ABIE53_002790 -1.0 -2.5 phasin family protein compare
ABIE53_003431 -1.0 -3.8 putative branched-subunit amino acid permease compare
ABIE53_006353 -1.0 -1.0 sugar phosphate isomerase/epimerase compare
ABIE53_006276 -1.0 -1.1 sulfonate transport system ATP-binding protein compare
ABIE53_003955 -1.0 -1.9 polar amino acid transport system substrate-binding protein compare
ABIE53_003571 -1.0 -1.1 thiol peroxidase compare
ABIE53_001704 -1.0 -2.2 NAD(P)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family) compare
ABIE53_003468 -1.0 -3.8 glycerol-3-phosphate dehydrogenase compare
ABIE53_004599 -1.0 -1.6 LysR family transcriptional regulator of abg operon compare
ABIE53_006190 -1.0 -3.8 DNA-binding response OmpR family regulator compare
ABIE53_001855 -1.0 -2.6 nitrite reductase (NADH) large subunit compare
ABIE53_002225 -1.0 -2.0 quercetin dioxygenase-like cupin family protein compare
ABIE53_005479 -1.0 -3.0 pyrroloquinoline quinone biosynthesis protein E compare
ABIE53_005647 -1.0 -2.2 xanthine/CO dehydrogenase XdhC/CoxF family maturation factor compare
ABIE53_003349 -1.0 -1.7 NAD(P)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family) compare
ABIE53_006082 -1.0 -2.5 O-antigen/teichoic acid export membrane protein compare
ABIE53_005030 -1.0 -3.0 2-haloacid dehalogenase compare


Specific Phenotypes

None in this experiment

For Paraburkholderia graminis OAS925 in carbon source experiments

For carbon source Cinnamic acid across organisms