Experiment set6IT007 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

D-Galactose carbon source

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_05667 +1.4 10.9 serine protease DegQ compare
H281DRAFT_04391 +1.2 9.4 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_01125 +1.0 2.4 protein of unknown function (DUF2760) compare
H281DRAFT_06081 +1.0 2.3 ubiquitin-hydrolase Zn-finger-containing protein compare
H281DRAFT_05537 +0.9 1.9 transcriptional regulator, IclR family compare
H281DRAFT_03684 +0.9 3.4 Protein N-acetyltransferase, RimJ/RimL family compare
H281DRAFT_04390 +0.9 7.1 ATP-binding cassette, subfamily B compare
H281DRAFT_05476 +0.9 3.0 Short-chain dehydrogenase compare
H281DRAFT_03381 +0.9 6.6 transcriptional regulator, GntR family compare
H281DRAFT_00998 +0.9 1.6 outer membrane protein, multidrug efflux system compare
H281DRAFT_05502 +0.8 2.7 transketolase subunit B compare
H281DRAFT_01052 +0.8 2.3 hypothetical protein compare
H281DRAFT_05021 +0.8 0.6 Response regulator compare
H281DRAFT_01837 +0.8 2.0 hypothetical protein compare
H281DRAFT_02574 +0.8 3.1 Glycine/D-amino acid oxidase (deaminating) compare
H281DRAFT_05781 +0.8 4.0 flagellar hook-length control protein FliK compare
H281DRAFT_00469 +0.8 1.4 phasin family protein compare
H281DRAFT_05756 +0.8 2.8 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG compare
H281DRAFT_04880 +0.7 1.8 PRC-barrel domain-containing protein compare
H281DRAFT_05389 +0.7 1.5 protein of unknown function (DUF3331) compare
H281DRAFT_03356 +0.7 1.8 glycerate dehydrogenase compare
H281DRAFT_04845 +0.7 5.6 dolichol-phosphate mannosyltransferase compare
H281DRAFT_00717 +0.7 1.1 HTH-type transcriptional regulator / antitoxin HigA compare
H281DRAFT_01414 +0.7 1.9 hypothetical protein compare
H281DRAFT_04837 +0.7 5.9 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family compare
H281DRAFT_01462 +0.7 1.4 cyclopropane-fatty-acyl-phospholipid synthase compare
H281DRAFT_06320 +0.7 2.4 biopolymer transport protein ExbD compare
H281DRAFT_00163 +0.7 4.9 glucokinase /transcriptional regulator, RpiR family compare
H281DRAFT_01742 +0.7 3.2 putative oxidoreductase compare
H281DRAFT_01450 +0.7 3.0 transcriptional regulator, LacI family compare
H281DRAFT_01505 +0.7 2.7 Nucleoside-diphosphate-sugar epimerase compare
H281DRAFT_05183 +0.7 1.5 putrescine transport system permease protein compare
H281DRAFT_05330 +0.6 1.6 urea transporter compare
H281DRAFT_01088 +0.6 1.5 Lactate dehydrogenase compare
H281DRAFT_01811 +0.6 2.1 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_06083 +0.6 1.1 heat shock protein Hsp20 compare
H281DRAFT_05172 +0.6 3.5 hypothetical protein compare
H281DRAFT_04002 +0.6 1.3 tRNA_Arg_ACG compare
H281DRAFT_01053 +0.6 1.6 3-hydroxyisobutyrate dehydrogenase compare
H281DRAFT_05744 +0.6 2.2 methyl-accepting chemotaxis sensory transducer with TarH sensor compare
H281DRAFT_05892 +0.6 1.0 carbohydrate ABC transporter substrate-binding protein, CUT1 family compare
H281DRAFT_04425 +0.6 1.5 hypothetical protein compare
H281DRAFT_00067 +0.6 2.3 transposase, IS4 family compare
H281DRAFT_05888 +0.6 3.2 carbohydrate ABC transporter ATP-binding protein, CUT1 family compare
H281DRAFT_05943 +0.6 1.7 Permease of the drug/metabolite transporter (DMT) superfamily compare
H281DRAFT_01183 +0.6 1.6 Sugar lactone lactonase YvrE compare
H281DRAFT_02683 +0.6 1.9 xanthine dehydrogenase accessory factor compare
H281DRAFT_03844 +0.6 1.9 L-glutamine synthetase (EC 6.3.1.2) compare
H281DRAFT_03486 +0.6 1.9 osmoprotectant transport system permease protein compare
H281DRAFT_01242 +0.6 1.5 CDP-diacylglycerol pyrophosphatase compare
H281DRAFT_03118 +0.6 2.1 NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase compare
H281DRAFT_03256 +0.6 2.0 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase compare
H281DRAFT_02754 +0.6 2.9 Glucose/arabinose dehydrogenase, beta-propeller fold compare
H281DRAFT_03418 +0.6 1.1 3-hydroxyisobutyrate dehydrogenase compare
H281DRAFT_00409 +0.6 2.5 bacterioferritin compare
H281DRAFT_04218 +0.6 2.1 hypothetical protein compare
H281DRAFT_05399 +0.6 1.6 isoquinoline 1-oxidoreductase, alpha subunit compare
H281DRAFT_01600 +0.6 3.7 Permease of the drug/metabolite transporter (DMT) superfamily compare
H281DRAFT_00052 +0.6 2.5 protein of unknown function (DUF3331) compare
H281DRAFT_04628 +0.6 1.5 FdhD protein compare
H281DRAFT_03307 +0.6 1.7 Cytochrome c oxidase assembly factor CtaG compare
H281DRAFT_03828 +0.6 2.1 MFS transporter, ACS family, hexuronate transporter compare
H281DRAFT_03968 +0.5 2.0 hypothetical protein compare
H281DRAFT_03320 +0.5 1.8 Uncharacterized conserved protein compare
H281DRAFT_00920 +0.5 2.8 transcriptional regulator, GntR family compare
H281DRAFT_05861 +0.5 3.2 16S rRNA. Bacterial SSU compare
H281DRAFT_00375 +0.5 0.9 benzoyl-CoA oxygenase, component A compare
H281DRAFT_05248 +0.5 0.8 hypothetical protein compare
H281DRAFT_06441 +0.5 1.3 cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein (EC 1.10.3.10) compare
H281DRAFT_01883 +0.5 0.9 putative addiction module antidote protein, CC2985 family compare
H281DRAFT_05737 +0.5 2.5 flagellar transcriptional activator FlhD compare
H281DRAFT_01095 +0.5 1.2 Glyoxylase, beta-lactamase superfamily II compare
H281DRAFT_00250 +0.5 2.2 hypothetical protein compare
H281DRAFT_03857 +0.5 3.1 MFS transporter, ACS family, D-galactonate transporter compare
H281DRAFT_04846 +0.5 2.5 Putative flippase GtrA (transmembrane translocase of bactoprenol-linked glucose) compare
H281DRAFT_03800 +0.5 2.5 NitT/TauT family transport system substrate-binding protein compare
H281DRAFT_01236 +0.5 3.0 Protein-tyrosine-phosphatase compare
H281DRAFT_02855 +0.5 1.7 carbonic anhydrase compare
H281DRAFT_04984 +0.5 2.4 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) compare
H281DRAFT_03299 +0.5 1.6 cytochrome bd-I ubiquinol oxidase subunit 2 apoprotein compare
H281DRAFT_05204 +0.5 3.2 hypothetical protein compare
H281DRAFT_05381 +0.5 1.2 phosphonoacetate hydrolase compare
H281DRAFT_01011 +0.5 1.4 Uncharacterized membrane protein YkgB compare
H281DRAFT_03473 +0.5 2.4 hypothetical protein compare
H281DRAFT_03644 +0.5 1.2 betaine-aldehyde dehydrogenase compare
H281DRAFT_01207 +0.5 1.6 SPFH domain, Band 7 family protein compare
H281DRAFT_03047 +0.5 1.4 protein of unknown function (DUF4148) compare
H281DRAFT_04100 +0.5 1.3 Protein of unknown function (DUF2917) compare
H281DRAFT_06490 +0.5 1.5 hypothetical protein compare
H281DRAFT_06276 +0.5 2.6 hypothetical protein compare
H281DRAFT_00695 +0.5 2.2 choline-sulfatase compare
H281DRAFT_01287 +0.5 0.9 mxaK protein compare
H281DRAFT_00690 +0.5 1.6 NADPH:quinone reductase compare
H281DRAFT_00677 +0.5 2.0 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_05174 +0.5 1.8 nitronate monooxygenase compare
H281DRAFT_03838 +0.5 1.0 hypothetical protein compare
H281DRAFT_05867 +0.5 1.2 uncharacterized peroxidase-related enzyme compare
H281DRAFT_01216 +0.5 1.4 hypothetical protein compare
H281DRAFT_03883 +0.5 1.6 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
H281DRAFT_00323 +0.5 2.2 GAF domain-containing protein compare
H281DRAFT_03055 +0.5 1.6 hypothetical protein compare
H281DRAFT_04847 +0.5 3.7 mannose-1-phosphate guanylyltransferase (GDP) (EC 2.7.7.22)/mannose-6-phosphate isomerase, type 2 (EC 5.3.1.8) compare
H281DRAFT_03335 +0.5 1.5 transcriptional regulator, LysR family compare
H281DRAFT_01546 +0.5 2.9 putative spermidine/putrescine transport system ATP-binding protein compare
H281DRAFT_01382 +0.5 0.8 Cellulose biosynthesis protein BcsR compare
H281DRAFT_05480 +0.5 1.0 Nucleotide-binding universal stress protein, UspA family compare
H281DRAFT_04406 +0.5 1.6 putative RNA-binding protein, YhbY family compare
H281DRAFT_06157 +0.5 1.3 hypothetical protein compare
H281DRAFT_05696 +0.5 3.1 Xaa-Pro aminopeptidase compare
H281DRAFT_02614 +0.5 1.5 L-glutamine ABC transporter membrane protein compare
H281DRAFT_04781 +0.5 0.9 putative colanic acid biosynthesis acetyltransferase WcaF compare
H281DRAFT_05486 +0.5 1.1 hypothetical protein compare
H281DRAFT_02518 +0.5 1.4 Acetyltransferases compare
H281DRAFT_01028 +0.5 0.8 peptide/nickel transport system permease protein compare
H281DRAFT_05915 +0.4 1.2 hypothetical protein compare
H281DRAFT_01603 +0.4 1.5 CHAD domain-containing protein compare
H281DRAFT_01717 +0.4 1.1 L-alanine-DL-glutamate epimerase compare
H281DRAFT_06099 +0.4 1.9 D-alanyl-D-alanine dipeptidase compare
H281DRAFT_03153 +0.4 1.4 two component transcriptional regulator, LuxR family compare
H281DRAFT_03252 +0.4 1.5 2,4-dihydroxyhept-2-enedioate aldolase (EC 4.1.2.-) compare
H281DRAFT_01326 +0.4 1.4 formylmethanofuran-tetrahydromethanopterin formyltransferase /formyltransferase/hydrolase complex subunit D compare
H281DRAFT_01267 +0.4 2.2 Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family compare
H281DRAFT_01331 +0.4 2.1 pyrroloquinoline-quinone synthase compare
H281DRAFT_01436 +0.4 0.5 NTE family protein compare
H281DRAFT_05141 +0.4 2.4 sulfoxide reductase catalytic subunit YedY compare
H281DRAFT_05337 +0.4 1.5 phosphinothricin acetyltransferase compare
H281DRAFT_04744 +0.4 1.8 enoyl-CoA hydratase compare
H281DRAFT_00229 +0.4 1.3 hypothetical protein compare
H281DRAFT_06500 +0.4 0.7 Lactate dehydrogenase compare
H281DRAFT_00240 +0.4 3.4 two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family compare
H281DRAFT_05541 +0.4 2.0 TRAP transporter, DctM subunit compare
H281DRAFT_00716 +0.4 2.0 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_02600 +0.4 0.9 Undecaprenyl-diphosphatase (EC 3.6.1.27) compare
H281DRAFT_04796 +0.4 2.4 Polysaccharide biosynthesis protein compare
H281DRAFT_02755 +0.4 2.2 Uncharacterized membrane protein compare
H281DRAFT_05770 +0.4 2.2 flagellar protein FlgJ compare
H281DRAFT_04440 +0.4 1.7 Predicted NTP pyrophosphohydrolase, NUDIX family compare
H281DRAFT_04417 +0.4 2.7 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR compare
H281DRAFT_04670 +0.4 1.4 tRNA-guanine transglycosylase compare
H281DRAFT_03525 +0.4 1.5 cold-shock DNA-binding protein family compare
H281DRAFT_03438 +0.4 2.2 polysaccharide transporter, PST family compare
H281DRAFT_03152 +0.4 1.7 hypothetical protein compare
H281DRAFT_05462 +0.4 1.3 hypothetical protein compare
H281DRAFT_00724 +0.4 1.1 protein of unknown function (DUF1839) compare
H281DRAFT_05754 +0.4 2.0 flagellar biosynthesis protein FlhF compare
H281DRAFT_00106 +0.4 0.8 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_02677 +0.4 1.5 Enoyl-CoA hydratase/carnithine racemase compare
H281DRAFT_00353 +0.4 1.4 G/U mismatch-specific uracil-DNA glycosylase compare
H281DRAFT_01483 +0.4 1.2 hypothetical protein compare
H281DRAFT_02231 +0.4 1.1 7-carboxy-7-deazaguanine synthase, Cx14CxxC type compare
H281DRAFT_05762 +0.4 1.2 flagellar basal-body rod protein FlgB compare
H281DRAFT_03372 +0.4 0.8 hypothetical protein compare
H281DRAFT_03429 +0.4 0.9 cytochrome bo3 quinol oxidase subunit 4 (EC 1.10.3.-) compare
H281DRAFT_02922 +0.4 1.2 transcriptional regulator, AraC family compare
H281DRAFT_03831 +0.4 2.0 heat shock protein Hsp20 compare
H281DRAFT_02512 +0.4 1.7 LysR family transcriptional regulator, glycine cleavage system transcriptional activator compare
H281DRAFT_04735 +0.4 1.9 Membrane-anchored ribosome-binding protein, inhibits growth in stationary phase, ElaB/YqjD/DUF883 family compare
H281DRAFT_03765 +0.4 2.1 Uncharacterized conserved protein YgbK, DUF1537 family compare
H281DRAFT_05536 +0.4 2.0 hypothetical protein compare
H281DRAFT_00408 +0.4 1.6 Protein of unknown function (DUF1328) compare
H281DRAFT_02736 +0.4 1.8 uncharacterized peroxidase-related enzyme compare
H281DRAFT_01825 +0.4 1.3 Outer membrane protein (porin) compare
H281DRAFT_05075 +0.4 0.8 hypothetical protein compare
H281DRAFT_05196 +0.4 1.8 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
H281DRAFT_02910 +0.4 0.8 conserved hypothetical protein compare
H281DRAFT_01509 +0.4 0.7 Uncharacterized conserved protein YgbK, DUF1537 family compare
H281DRAFT_04747 +0.4 1.5 aspartate-alanine antiporter compare
H281DRAFT_02561 +0.4 1.6 NADP-dependent 3-hydroxy acid dehydrogenase YdfG compare
H281DRAFT_04309 +0.4 2.5 transcriptional regulator, ArsR family compare
H281DRAFT_00448 +0.4 2.9 Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily compare
H281DRAFT_03436 +0.4 2.2 hypothetical protein compare
H281DRAFT_03228 +0.4 1.5 carbohydrate ABC transporter ATP-binding protein, CUT1 family compare
H281DRAFT_04792 +0.4 1.2 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_03139 +0.4 1.7 membrane protein compare
H281DRAFT_05945 +0.4 1.0 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_06556 +0.4 0.6 hypothetical protein compare
H281DRAFT_02141 +0.4 1.2 hypothetical protein compare
H281DRAFT_00254 +0.4 2.7 DNA (cytosine-5)-methyltransferase 1 compare
H281DRAFT_04755 +0.4 0.9 transcriptional regulator, LysR family compare
H281DRAFT_06453 +0.4 1.0 Protein required for attachment to host cells compare
H281DRAFT_02725 +0.4 1.7 MFS transporter, MHS family, proline/betaine transporter compare
H281DRAFT_01653 +0.4 0.9 Phenylpropionate dioxygenase, large terminal subunit compare
H281DRAFT_01262 +0.4 0.9 putative spermidine/putrescine transport system permease protein compare
H281DRAFT_04939 +0.4 1.3 transcriptional regulator, TetR family compare
H281DRAFT_05764 +0.4 1.7 flagellar basal-body rod modification protein FlgD compare
H281DRAFT_01057 +0.4 1.6 monosaccharide ABC transporter ATP-binding protein, CUT2 family (TC 3.A.1.2.-) compare
H281DRAFT_01228 +0.4 2.0 L-rhamnonate dehydratase compare
H281DRAFT_05315 +0.4 0.6 5-dehydro-4-deoxy-D-glucarate aldolase (EC 4.1.2.20) compare
H281DRAFT_05914 +0.4 1.7 hypothetical protein compare
H281DRAFT_03352 +0.4 1.2 Polyketide cyclase / dehydrase and lipid transport compare
H281DRAFT_01082 +0.4 2.1 putrescine aminotransferase compare
H281DRAFT_02741 +0.4 1.1 Enoyl-CoA hydratase/carnithine racemase compare
H281DRAFT_03042 +0.4 0.6 NADP-dependent 3-hydroxy acid dehydrogenase YdfG compare
H281DRAFT_00255 +0.4 1.3 hypothetical protein compare
H281DRAFT_02058 +0.4 0.6 cholesterol transport system auxiliary component compare
H281DRAFT_00954 +0.4 2.0 GDPmannose 4,6-dehydratase compare
H281DRAFT_06100 +0.4 1.5 peptide/nickel transport system substrate-binding protein compare
H281DRAFT_00541 +0.4 2.2 serine O-acetyltransferase (EC 2.3.1.30) compare
H281DRAFT_03199 +0.4 2.0 flagellar transcriptional activator FlhD compare
H281DRAFT_05097 +0.4 1.7 putative transposase compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source D-Galactose in Paraburkholderia bryophila 376MFSha3.1

For carbon source D-Galactose across organisms