Experiment set6IT006 for Sinorhizobium meliloti 1021

Compare to:

Day3 TSB

200 most important genes:

  gene name fitness t score description  
SMc00963 -3.5 -3.3 hypothetical protein compare
SMc02245 -2.9 -4.4 dihydroorotate dehydrogenase 2 compare
SMc02246 -2.6 -0.6 hypothetical protein compare
SMc00412 -2.5 -2.9 orotidine 5'-phosphate decarboxylase compare
SM_b20948 -2.2 -1.7 glucosyltransferase compare
SMc02166 -2.0 -5.0 dihydroorotase compare
SMc00073 -1.9 -3.9 hypothetical protein compare
SMc04001 -1.8 -1.8 phosphoribosylaminoimidazole carboxylase catalytic subunit protein compare
SMc02165 -1.8 -5.8 orotate phosphoribosyltransferase compare
SMc01881 -1.7 -2.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SMc01360 -1.7 -1.4 aspartate carbamoyltransferase catalytic subunit compare
SMc00495 -1.7 -7.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
SMc00493 -1.6 -8.2 phosphoribosylformylglycinamidine synthase I compare
SMc00993 -1.6 -8.3 phosphoribosylamine--glycine ligase compare
SMc01147 -1.6 -4.0 coproporphyrinogen III oxidase compare
SMc00615 -1.4 -9.9 phosphoribosylaminoimidazole synthetase compare
SMc00488 -1.4 -11.6 phosphoribosylformylglycinamidine synthase II compare
SMc04088 -1.3 -8.0 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
SMc00614 -1.3 -4.9 phosphoribosylglycinamide formyltransferase compare
SM_b21175 -1.3 -2.1 phosphate uptake ABC transporter permease compare
SMc00554 -1.3 -7.6 amidophosphoribosyltransferase compare
SMc01206 -1.2 -0.6 queuine tRNA-ribosyltransferase compare
SMc02755 -1.2 -5.2 S-adenosyl-L-homocysteine hydrolase compare
SMc01183 -1.2 -1.8 LexA repressor compare
SMc04002 -1.1 -5.3 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
SMc02856 -1.1 -6.7 penicillin-binding protein compare
SMc01242 -1.0 -2.4 signal peptide protein compare
SMc00494 -1.0 -2.2 phosphoribosylformylglycinamidine synthase subunit PurS compare
SMc01471 -1.0 -2.9 cytochrome C oxidase assembly factor transmembrane protein compare
SMc01850 -1.0 -2.8 hypothetical protein compare
SMc00013 -0.9 -2.6 cytochrome C oxidase subunit III transmembrane protein compare
SMc00188 -0.9 -5.7 cytochrome B transmembrane protein compare
SMc04000 -0.9 -1.7 hypothetical protein compare
SMa1413 -0.9 -0.9 hypothetical protein compare
SMc00012 -0.9 -1.5 cytochrome C oxidase assembly protein compare
SMc00187 -0.9 -3.4 ubiquinol-cytochrome C reductase iron-sulfur subunit protein compare
SMc00689 -0.9 -5.8 lipoprotein compare
SMc01800 -0.9 -0.7 cytochrome C oxidase assembly transmembrane protein compare
SMc01342 -0.8 -3.7 hypothetical protein compare
SMc02867 -0.8 -3.7 multidrug-efflux system transmembrane protein compare
SMc00450 -0.8 -1.1 protoheme IX farnesyltransferase compare
SMc01768 -0.8 -3.8 transcriptional regulator compare
SMc01440 -0.8 -4.9 hydrolase serine protease transmembrane protein compare
SMc01368 -0.8 -3.5 transport transmembrane protein compare
SM_b21174 -0.8 -1.8 phosphate uptake ABC transporter permease compare
SMc02897 -0.8 -2.0 cytochrome C transmembrane protein compare
SMc04383 -0.8 -3.0 putative hydrolase, required for lysine catabolism (from data) compare
SMc02858 -0.8 -0.8 chaperone protein DnaJ compare
SM_b20758 -0.8 -2.5 ArsR family transcriptional regulator compare
SMc01454 -0.8 -6.2 hypothetical protein compare
SMc00143 -0.7 -1.5 molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
SMc02058 -0.7 -2.4 YAJC protein compare
SMc02365 -0.7 -5.3 protease precursor protein compare
SMc03069 -0.7 -0.5 6-phosphogluconolactonase compare
SMc03850 -0.7 -0.6 heme exporter D (cytochrome C-type biogenesis protein) transmembrane compare
SMc02985 -0.7 -4.9 hypothetical protein compare
SMc00360 -0.7 -2.4 hypothetical protein compare
SMa0286 -0.7 -1.2 hypothetical protein compare
SMc02451 -0.7 -1.6 hypothetical protein compare
SMc02121 -0.6 -1.4 ABC transporter for L-Glutamine, L-Histidine, and other L-amino acids, ATPase component (from data) compare
SMc01361 -0.6 -1.3 dihydroorotase compare
SMc00404 -0.6 -1.1 hypothetical protein compare
SMc01012 -0.6 -1.6 hypothetical protein compare
SMc03182 -0.6 -2.7 pH adaptation potassium efflux system E transmembrane protein compare
SMc03773 -0.6 -3.7 hypothetical protein compare
SMc01842 -0.6 -1.7 methyltransferase transcription regulator protein compare
SMc02906 -0.6 -1.0 hypothetical protein compare
SMa1174 -0.6 -1.8 hypothetical protein compare
SMc00241 -0.6 -1.5 transcriptional regulator compare
SM_b21213 -0.6 -2.3 serinethreonine protein phosphatase compare
SMc00189 -0.6 -2.9 cytochrome C1 protein compare
SM_b20955 -0.6 -2.2 endo-beta-1,3-1,4-glycanase compare
SMc01701 -0.6 -1.2 hypothetical protein compare
SMc02362 -0.6 -1.5 cytochrome c-type biogenesis protein CcmE compare
SMc03070 -0.6 -2.6 glucose-6-phosphate 1-dehydrogenase compare
SMa0848 -0.6 -1.9 hypothetical protein compare
SMc01441 -0.6 -2.9 membrane bound protease compare
SMc03025 -0.6 -4.0 flagellum-specific ATP synthase compare
SMc03973 -0.5 -4.5 hypothetical protein compare
SMc02868 -0.5 -2.8 multidrug efflux system protein compare
SMc03935 -0.5 -4.5 hypothetical protein compare
SMc00513 -0.5 -2.9 amino acid-binding periplasmic protein compare
SMc03027 -0.5 -2.1 flagellar basal body rod protein FlgB compare
SM_b20370 -0.5 -1.9 ATP-binding transport protein compare
SMc02050 -0.5 -1.6 trigger factor compare
SM_b21679 -0.5 -1.3 hypothetical protein compare
SMa2289 -0.5 -1.1 hypothetical protein compare
SMa0575 -0.5 -1.4 hypothetical protein compare
SMc01770 -0.5 -0.8 serine hydroxymethyltransferase compare
SMc01178 -0.5 -1.1 multidrug transmembrane resistance signal peptide protein compare
SMc03016 -0.5 -4.0 transcriptional regulator compare
SMa2011 -0.5 -1.4 hypothetical protein compare
SMc00576 -0.5 -3.1 hypothetical protein compare
SMc02833 -0.5 -0.9 penicillin-insensitive murein endopeptidase compare
SMa0645 -0.5 -1.2 hypothetical protein compare
SMc03180 -0.5 -3.6 monovalent cation/H+ antiporter subunit C compare
SM_b21191 -0.5 -3.4 surface saccharide ABC transporter ATP-binding/membrane spanning protein compare
SMc01929 -0.5 -1.9 hypothetical protein compare
SMc00709 -0.5 -2.5 hypothetical protein compare
SMc05009 -0.5 -1.8 nodulation protein NolR compare
SMc02173 -0.5 -1.2 hypothetical protein compare
SMc02641 -0.5 -2.2 UDP-glucose 6-dehydrogenase compare
SMc00166 -0.5 -1.3 oxidoreductase NAD protein compare
SMa0132 -0.5 -1.4 hypothetical protein compare
SM_b21035 -0.5 -2.7 hypothetical protein compare
SMc01845 -0.5 -1.3 transglycosylase transmembrane protein compare
SMc02084 -0.5 -0.8 biopolymer transport transmembrane protein compare
SMc02102 -0.4 -2.0 hypothetical protein compare
SMc03052 -0.4 -2.5 flagellar basal body rod modification protein compare
SMc03053 -0.4 -1.2 flagellar biosynthesis protein FliQ compare
SMc04126 -0.4 -3.7 ABC transporter permease compare
SM_b21551 -0.4 -0.9 hypothetical protein compare
SMc04866 -0.4 -1.4 hypothetical protein compare
SMc02051 -0.4 -1.4 hypothetical protein compare
SMc02884 -0.4 -3.4 lipoprotein compare
SMc03046 -0.4 -2.5 transcriptional regulator compare
SMc01366 -0.4 -3.0 hypothetical protein compare
SM_b22001 -0.4 -1.1 hypothetical protein compare
SMc00650 -0.4 -1.3 hypothetical protein compare
SMa1780 -0.4 -2.5 hypothetical protein compare
SMc03158 -0.4 -1.2 ABC transporter permease compare
SMc03993 -0.4 -2.6 hypothetical protein compare
SMc02232 -0.4 -1.1 hypothetical protein compare
SMc03785 -0.4 -1.6 dinucleoside polyphosphate hydrolase compare
SMc00085 -0.4 -2.4 cytochrome oxidase complex biogenesis factor transmembrane protein compare
SMc04389 -0.4 -1.4 hydroxypyruvate reductase compare
SMc00726 -0.4 -0.5 thiol:disulfide interchange redox-active center transmembrane protein compare
SM_b20219 -0.4 -1.8 response regulator protein compare
SMc02095 -0.4 -3.3 hypothetical protein compare
SMa1578 -0.4 -1.8 CpaA2 pilus assembly protein compare
SM_b20909 -0.4 -0.9 hypothetical protein compare
SMc01660 -0.4 -2.0 hypothetical protein compare
SMc00815 -0.4 -0.3 inosine 5'-monophosphate dehydrogenase compare
SM_b21359 -0.4 -1.4 LysR family transcriptional regulator compare
SM_b20535 -0.4 -2.3 dehydrogenase compare
SMa0121 -0.4 -1.3 hypothetical protein compare
SMc00461 -0.4 -1.0 deoxyuridine 5'-triphosphate nucleotidohydrolase compare
SM_b20117 -0.4 -0.9 sugar transferase compare
SMc01580 -0.4 -1.8 hypothetical protein compare
SMc02407 -0.4 -2.4 hypothetical protein compare
SMc02476 -0.4 -0.9 hypothetical protein compare
SMc04115 -0.4 -1.7 hypothetical protein compare
SMa1921 -0.4 -1.5 hypothetical protein compare
SM_b21170 -0.4 -2.6 guanylate kinase compare
SMc02713 -0.4 -1.3 RNA polymerase sigma-E factor (sigma-24) protein compare
SMc02510 -0.4 -0.5 ferric uptake regulation protein compare
SMc01099 -0.4 -1.2 tRNA pseudouridine synthase A compare
SMc00566 -0.4 -1.4 hypothetical protein compare
SMc03969 -0.4 -2.3 hypothetical protein compare
SMc04175 -0.4 -2.9 transmembrane protein compare
SMc01969 -0.4 -2.3 hypothetical protein compare
SMa0661 -0.4 -1.7 hypothetical protein compare
SMc02822 -0.4 -1.7 hypothetical protein compare
SMa1053 -0.4 -0.7 hypothetical protein compare
SMc02846 -0.4 -2.0 sugar kinase compare
SMc03780 -0.4 -1.6 hypothetical protein compare
SMa5023 -0.4 -2.0 hypothetical protein compare
SMc02231 -0.4 -1.5 hypothetical protein compare
SMa1118 -0.4 -0.8 HspC2 heat shock protein compare
SMc00944 -0.4 -1.5 hypothetical protein compare
SMc01258 -0.4 -2.1 hypothetical protein compare
SMc03229 -0.4 -0.7 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
SMc01110 -0.4 -2.8 DNA-binding protein compare
SMc00711 -0.4 -1.3 cyclohexadienyl dehydrogenase compare
SMc04127 -0.4 -2.7 ABC transporter ATP-binding protein compare
SMa0760 -0.4 -1.4 FixT2 anti-kinase compare
SM_b21176 -0.3 -0.6 phosphate uptake ABC transporter substrate-binding protein precursor compare
SMc02753 -0.3 -0.7 PTS system transporter subunit IIA compare
SMc02018 -0.3 -2.2 hypothetical protein compare
SMc03056 -0.3 -1.8 hypothetical protein compare
SM_b20290 -0.3 -1.7 transcriptional regulator compare
SMa1822 -0.3 -1.2 hypothetical protein compare
SMc00009 -0.3 -1.7 cytochrome C oxidase subunit II protein compare
SMa2141 -0.3 -1.9 formyltetrahydrofolate deformylase compare
SMc02695 -0.3 -1.5 GTP-dependent nucleic acid-binding protein EngD compare
SMa1002 -0.3 -1.0 hypothetical protein compare
SM_b21669 -0.3 -1.4 hypothetical protein compare
SMa1256 -0.3 -1.6 hypothetical protein compare
SM_b21049 -0.3 -1.6 hypothetical protein compare
SMc03791 -0.3 -1.3 hypothetical protein compare
SMa1201 -0.3 -1.6 hypothetical protein compare
SMa0450 -0.3 -1.2 hypothetical protein compare
SMc03763 -0.3 -0.2 cytosine-specific methyltransferase compare
SMc04124 -0.3 -2.7 cytidine deaminase compare
SMc01367 -0.3 -1.8 hypothetical protein compare
SM_b20374 -0.3 -0.9 substrate-binding protein compare
SMc04342 -0.3 -1.4 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase compare
SMa0702 -0.3 -1.5 hypothetical protein compare
SMc00998 -0.3 -2.9 signal peptide protein compare
SMc01595 -0.3 -0.8 sensor histidine kinase transmembrane protein compare
SMc00337 -0.3 -0.6 hypothetical protein compare
SMc01112 -0.3 -1.7 hypothetical protein compare
SMa2389 -0.3 -1.5 OsmC-like protein compare
SMc00458 -0.3 -3.0 transcriptional regulator compare
SMc03015 -0.3 -2.9 transcriptional regulator compare
SMa1111 -0.3 -2.2 hypothetical protein compare
SMc03236 -0.3 -1.5 glutamine amidotransferase compare
SMa1643 -0.3 -1.7 hypothetical protein compare
SMc02221 -0.3 -1.8 hypothetical protein compare
SMa1556 -0.3 -1.5 Methyl-accepting chemotaxis protein compare


Specific Phenotypes

None in this experiment

For Sinorhizobium meliloti 1021 in tsb experiments