Experiment set6IT006 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

4-Methyl-2-oxopentanoic acid carbon source

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_04391 +1.4 12.1 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_04390 +1.1 8.5 ATP-binding cassette, subfamily B compare
H281DRAFT_01347 +1.0 5.0 transcriptional regulator, TetR family compare
H281DRAFT_04002 +1.0 1.6 tRNA_Arg_ACG compare
H281DRAFT_04654 +1.0 1.8 NAD(P) transhydrogenase subunit alpha compare
H281DRAFT_05075 +0.9 2.9 hypothetical protein compare
H281DRAFT_05915 +0.9 2.7 hypothetical protein compare
H281DRAFT_01028 +0.9 1.8 peptide/nickel transport system permease protein compare
H281DRAFT_00377 +0.8 2.6 N-carbamoyl-L-amino-acid hydrolase compare
H281DRAFT_02231 +0.8 1.3 7-carboxy-7-deazaguanine synthase, Cx14CxxC type compare
H281DRAFT_04270 +0.8 6.6 L-glutamate-binding protein /L-aspartate-binding protein compare
H281DRAFT_02614 +0.8 1.6 L-glutamine ABC transporter membrane protein compare
H281DRAFT_01095 +0.8 3.0 Glyoxylase, beta-lactamase superfamily II compare
H281DRAFT_05667 +0.8 5.0 serine protease DegQ compare
H281DRAFT_01321 +0.8 1.9 probable H4MPT-linked C1 transfer pathway protein compare
H281DRAFT_03199 +0.7 3.3 flagellar transcriptional activator FlhD compare
H281DRAFT_04846 +0.7 2.9 Putative flippase GtrA (transmembrane translocase of bactoprenol-linked glucose) compare
H281DRAFT_01462 +0.7 2.9 cyclopropane-fatty-acyl-phospholipid synthase compare
H281DRAFT_04246 +0.7 2.9 glutathione S-transferase compare
H281DRAFT_01244 +0.7 2.3 Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain compare
H281DRAFT_03576 +0.7 2.2 two-component system, chemotaxis family, response regulator CheY compare
H281DRAFT_05725 +0.7 5.7 2,3-dehydroadipyl-CoA hydratase / enoyl-CoA hydratase (EC 4.2.1.17) (from data) compare
H281DRAFT_06269 +0.7 2.1 hypoxanthine phosphoribosyltransferase compare
H281DRAFT_06157 +0.7 1.2 hypothetical protein compare
H281DRAFT_00008 +0.7 1.7 hypothetical protein compare
H281DRAFT_03610 +0.7 2.9 squalene-hopene/tetraprenyl-beta-curcumene cyclase compare
H281DRAFT_01047 +0.7 2.0 GTP cyclohydrolase II compare
H281DRAFT_04606 +0.7 1.4 threonine ammonia-lyase, biosynthetic, long form compare
H281DRAFT_03130 +0.7 1.0 transcriptional regulator, XRE family with cupin sensor compare
H281DRAFT_04800 +0.7 2.3 protein SCO1/2 compare
H281DRAFT_01108 +0.7 1.5 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_06484 +0.7 2.2 amino acid ABC transporter substrate-binding protein, PAAT family compare
H281DRAFT_05438 +0.7 1.8 transcriptional regulator, IclR family compare
H281DRAFT_00248 +0.6 2.3 hypothetical protein compare
H281DRAFT_03127 +0.6 1.5 oligopeptide transport system permease protein compare
H281DRAFT_04552 +0.6 3.5 acetolactate synthase, small subunit compare
H281DRAFT_04997 +0.6 1.4 AraC-type DNA-binding protein compare
H281DRAFT_00970 +0.6 3.0 putative Mg2+ transporter-C (MgtC) family protein compare
H281DRAFT_01179 +0.6 2.6 short chain enoyl-CoA hydratase compare
H281DRAFT_02813 +0.6 1.9 Uncharacterized protein conserved in bacteria compare
H281DRAFT_05774 +0.6 2.7 flagellar biosynthetic protein FliR compare
H281DRAFT_03385 +0.6 1.9 NADPH2 dehydrogenase compare
H281DRAFT_05480 +0.6 0.9 Nucleotide-binding universal stress protein, UspA family compare
H281DRAFT_00130 +0.6 1.7 Predicted secreted protein compare
H281DRAFT_01883 +0.6 1.1 putative addiction module antidote protein, CC2985 family compare
H281DRAFT_06576 +0.6 1.5 CheY chemotaxis protein or a CheY-like REC (receiver) domain compare
H281DRAFT_01766 +0.6 2.4 cytochrome c oxidase subunit 2 compare
H281DRAFT_02429 +0.6 1.5 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_04787 +0.6 2.0 polysaccharide transporter, PST family compare
H281DRAFT_02683 +0.6 1.5 xanthine dehydrogenase accessory factor compare
H281DRAFT_00382 +0.6 1.6 amino acid ABC transporter substrate-binding protein, PAAT family compare
H281DRAFT_05967 +0.6 1.4 Cupredoxin-like domain-containing protein compare
H281DRAFT_04467 +0.6 4.4 UDP-glucose pyrophosphorylase compare
H281DRAFT_00806 +0.6 2.7 Membrane transporters of cations and cationic drugs compare
H281DRAFT_01372 +0.6 2.3 protocatechuate 4,5-dioxygenase alpha subunit (EC 1.13.11.8) compare
H281DRAFT_04768 +0.6 1.3 colanic acid biosynthesis protein WcaH compare
H281DRAFT_00544 +0.6 3.5 peptidyl-prolyl cis-trans isomerase A (cyclophilin A) compare
H281DRAFT_03796 +0.6 2.4 protein of unknown function (DUF4148) compare
H281DRAFT_00895 +0.6 3.3 trigger factor compare
H281DRAFT_05737 +0.6 1.9 flagellar transcriptional activator FlhD compare
H281DRAFT_00488 +0.6 1.7 exonuclease RecJ compare
H281DRAFT_03771 +0.6 1.2 hypothetical protein compare
H281DRAFT_04904 +0.6 1.6 outer membrane transport energization protein ExbD compare
H281DRAFT_05633 +0.6 2.1 hypothetical protein compare
H281DRAFT_05903 +0.6 1.5 osmotically inducible protein OsmC compare
H281DRAFT_00236 +0.6 3.9 sigma54 specific transcriptional regulator, Fis family compare
H281DRAFT_03488 +0.6 2.6 Predicted amidohydrolase compare
H281DRAFT_03572 +0.5 2.1 Crotonobetainyl-CoA:carnitine CoA-transferase CaiB compare
H281DRAFT_05067 +0.5 2.6 protein of unknown function (DUF3597) compare
H281DRAFT_04931 +0.5 2.6 Surfactin synthase thioesterase subunit compare
H281DRAFT_04433 +0.5 1.5 Undecaprenyl-diphosphatase compare
H281DRAFT_03419 +0.5 1.9 4-carboxy-4-hydroxy-2-oxoadipate aldolase (EC 4.1.3.-) compare
H281DRAFT_03117 +0.5 1.8 sarcosine oxidase subunit beta compare
H281DRAFT_04400 +0.5 4.6 membrane-bound lytic murein transglycosylase D compare
H281DRAFT_06338 +0.5 2.0 2-haloacid dehalogenase compare
H281DRAFT_05902 +0.5 1.5 2-Methylisocitrate lyase, PEP mutase family compare
H281DRAFT_00254 +0.5 3.8 DNA (cytosine-5)-methyltransferase 1 compare
H281DRAFT_04544 +0.5 1.5 diacylglycerol kinase (ATP) compare
H281DRAFT_04934 +0.5 1.2 Sensors of blue-light using FAD compare
H281DRAFT_04346 +0.5 1.4 uncharacterized protein compare
H281DRAFT_03821 +0.5 2.3 serine/threonine protein kinase compare
H281DRAFT_00240 +0.5 3.6 two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family compare
H281DRAFT_06547 +0.5 1.6 RNA polymerase sigma-70 factor, ECF subfamily compare
H281DRAFT_05376 +0.5 2.6 hypothetical protein compare
H281DRAFT_03883 +0.5 1.9 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
H281DRAFT_05910 +0.5 1.0 hypothetical protein compare
H281DRAFT_01185 +0.5 2.5 MFS transporter, AAHS family, 4-hydroxybenzoate transporter compare
H281DRAFT_05248 +0.5 1.3 hypothetical protein compare
H281DRAFT_03399 +0.5 1.3 cytochrome bd-I ubiquinol oxidase subunit 2 apoprotein (EC 1.10.3.10) compare
H281DRAFT_05231 +0.5 3.5 2-keto-4-pentenoate hydratase compare
H281DRAFT_04837 +0.5 4.0 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family compare
H281DRAFT_04369 +0.5 1.7 Uncharacterized conserved protein YjbJ, UPF0337 family compare
H281DRAFT_00654 +0.5 1.4 putative spermidine/putrescine transport system substrate-binding protein compare
H281DRAFT_05476 +0.5 1.2 Short-chain dehydrogenase compare
H281DRAFT_05830 +0.5 1.0 hypothetical protein compare
H281DRAFT_00939 +0.5 2.8 hypothetical protein compare
H281DRAFT_00885 +0.5 2.7 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ compare
H281DRAFT_05724 +0.5 3.0 3-oxo-5,6-didehydrosuberyl-CoA semialdehyde dehydrogenase PaaZ (EC:1.2.1.91) (from data) compare
H281DRAFT_00050 +0.5 0.8 Uncharacterized conserved protein, DUF1330 family compare
H281DRAFT_04645 +0.5 1.4 hypothetical protein compare
H281DRAFT_02696 +0.5 2.0 glutathione S-transferase compare
H281DRAFT_02007 +0.5 4.0 phosphoenolpyruvate--protein phosphotransferase compare
H281DRAFT_03023 +0.5 1.0 Protein of unknown function (DUF2866) compare
H281DRAFT_01683 +0.5 1.4 ketopantoate reductase (EC 1.1.1.169) compare
H281DRAFT_02701 +0.5 1.2 dihydroxyacetone kinase, C-terminal domain compare
H281DRAFT_05977 +0.5 1.5 Enoyl-CoA hydratase/carnithine racemase compare
H281DRAFT_01675 +0.5 2.1 PAS/PAC sensor hybrid histidine kinase (EC 2.7.13.3) compare
H281DRAFT_06237 +0.5 1.6 cell division-specific peptidoglycan biosynthesis regulator FtsW compare
H281DRAFT_05775 +0.5 2.2 flagellar biosynthetic protein FliQ compare
H281DRAFT_04290 +0.5 2.2 TM2 domain-containing membrane protein YozV compare
H281DRAFT_04250 +0.5 1.9 DNA-binding protein Fis compare
H281DRAFT_01262 +0.5 1.1 putative spermidine/putrescine transport system permease protein compare
H281DRAFT_05398 +0.5 1.7 hypothetical protein compare
H281DRAFT_02662 +0.5 1.2 Predicted xylanase/chitin deacetylase compare
H281DRAFT_05816 +0.5 3.6 soluble lytic murein transglycosylase compare
H281DRAFT_02922 +0.5 1.1 transcriptional regulator, AraC family compare
H281DRAFT_00645 +0.5 1.8 hypothetical protein compare
H281DRAFT_01635 +0.5 1.9 transcriptional regulator, GntR family compare
H281DRAFT_03839 +0.5 1.3 hypothetical protein compare
H281DRAFT_01705 +0.5 1.2 aliphatic nitrilase compare
H281DRAFT_03835 +0.5 1.4 NitT/TauT family transport system permease protein compare
H281DRAFT_05502 +0.4 1.4 transketolase subunit B compare
H281DRAFT_02060 +0.4 2.1 phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein compare
H281DRAFT_04171 +0.4 2.8 membrane fusion protein, multidrug efflux system compare
H281DRAFT_04269 +0.4 3.2 L-glutamate ABC transporter membrane protein /L-aspartate ABC transporter membrane protein compare
H281DRAFT_01998 +0.4 2.8 tRNA (cytidine/uridine-2'-O-)-methyltransferase compare
H281DRAFT_01612 +0.4 2.4 2OG-Fe(II) oxygenase superfamily protein compare
H281DRAFT_06355 +0.4 1.1 4-oxalomesaconate hydratase compare
H281DRAFT_04372 +0.4 1.7 hypothetical protein compare
H281DRAFT_01848 +0.4 1.1 hypothetical protein compare
H281DRAFT_05810 +0.4 2.0 Uncharacterized membrane protein compare
H281DRAFT_04268 +0.4 3.4 L-glutamate ABC transporter membrane protein /L-aspartate ABC transporter membrane protein compare
H281DRAFT_06356 +0.4 1.3 RraA famliy compare
H281DRAFT_04968 +0.4 1.7 Hemin uptake protein hemP compare
H281DRAFT_05330 +0.4 1.6 urea transporter compare
H281DRAFT_06024 +0.4 2.3 transcriptional regulator, LysR family compare
H281DRAFT_01422 +0.4 1.5 hypothetical protein compare
H281DRAFT_02503 +0.4 1.4 Peroxiredoxin compare
H281DRAFT_03154 +0.4 0.9 two-component system, NarL family, sensor kinase compare
H281DRAFT_04920 +0.4 2.2 Predicted arabinose efflux permease, MFS family compare
H281DRAFT_00716 +0.4 1.7 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_02736 +0.4 2.0 uncharacterized peroxidase-related enzyme compare
H281DRAFT_02178 +0.4 2.4 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase compare
H281DRAFT_05278 +0.4 1.4 malonate decarboxylase gamma subunit compare
H281DRAFT_05321 +0.4 1.9 uronate dehydrogenase compare
H281DRAFT_03915 +0.4 1.4 UDPglucose 6-dehydrogenase compare
H281DRAFT_05753 +0.4 3.1 flagellar biosynthesis protein FlhA compare
H281DRAFT_00315 +0.4 2.0 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_01632 +0.4 3.4 LuxR family transcriptional regulator, quorum-sensing transcription factor LasR compare
H281DRAFT_00141 +0.4 2.4 alpha-ribazole phosphatase compare
H281DRAFT_05505 +0.4 2.4 hypothetical protein compare
H281DRAFT_01310 +0.4 1.0 ribulose-5-phosphate 3-epimerase (EC 5.1.3.1) compare
H281DRAFT_01417 +0.4 0.9 anti-sigma-28 factor, FlgM family compare
H281DRAFT_05445 +0.4 1.4 protein of unknown function (DUF4440) compare
H281DRAFT_05527 +0.4 2.0 transcriptional regulator, TetR family compare
H281DRAFT_05945 +0.4 1.7 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_04878 +0.4 1.3 transcriptional regulator, ArsR family compare
H281DRAFT_04170 +0.4 2.7 multidrug efflux pump compare
H281DRAFT_01709 +0.4 1.8 hypothetical protein compare
H281DRAFT_05157 +0.4 1.0 allantoin racemase compare
H281DRAFT_03551 +0.4 2.1 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor compare
H281DRAFT_03273 +0.4 1.0 Uncharacterized membrane protein YqjE compare
H281DRAFT_04601 +0.4 2.1 hypothetical protein compare
H281DRAFT_00229 +0.4 2.1 hypothetical protein compare
H281DRAFT_03800 +0.4 1.2 NitT/TauT family transport system substrate-binding protein compare
H281DRAFT_02173 +0.4 1.4 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_02579 +0.4 0.8 maleylacetate reductase compare
H281DRAFT_01211 +0.4 2.4 Transcriptional regulator of acetoin/glycerol metabolism compare
H281DRAFT_03545 +0.4 1.7 hypothetical protein compare
H281DRAFT_06370 +0.4 2.5 tight adherence protein C compare
H281DRAFT_03374 +0.4 1.9 hypothetical protein compare
H281DRAFT_06035 +0.4 2.0 esterase, PHB depolymerase family compare
H281DRAFT_04169 +0.4 2.9 outer membrane protein, multidrug efflux system compare
H281DRAFT_02734 +0.4 1.9 YXWGXW repeat-containing protein compare
H281DRAFT_01100 +0.4 1.5 hypothetical protein compare
H281DRAFT_06567 +0.4 1.1 hypothetical protein compare
H281DRAFT_04883 +0.4 0.9 L-lysine exporter family protein LysE/ArgO compare
H281DRAFT_06322 +0.4 1.5 LPS-assembly lipoprotein compare
H281DRAFT_00954 +0.4 1.8 GDPmannose 4,6-dehydratase compare
H281DRAFT_03753 +0.4 1.8 Glyoxylase, beta-lactamase superfamily II compare
H281DRAFT_00376 +0.4 1.6 transcriptional regulator, TetR family compare
H281DRAFT_00242 +0.4 2.5 hypothetical protein compare
H281DRAFT_03732 +0.4 0.9 carbohydrate ABC transporter membrane protein 1, CUT1 family compare
H281DRAFT_01811 +0.4 1.5 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_02170 +0.4 1.4 Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family compare
H281DRAFT_04880 +0.4 1.4 PRC-barrel domain-containing protein compare
H281DRAFT_01057 +0.4 1.4 monosaccharide ABC transporter ATP-binding protein, CUT2 family (TC 3.A.1.2.-) compare
H281DRAFT_03844 +0.4 0.8 L-glutamine synthetase (EC 6.3.1.2) compare
H281DRAFT_01717 +0.4 0.6 L-alanine-DL-glutamate epimerase compare
H281DRAFT_01750 +0.4 1.7 PAS domain S-box-containing protein compare
H281DRAFT_01077 +0.4 1.3 benzoate/toluate 1,2-dioxygenase reductase subunit compare
H281DRAFT_00051 +0.4 0.8 hypothetical protein compare
H281DRAFT_06320 +0.4 1.6 biopolymer transport protein ExbD compare
H281DRAFT_00339 +0.4 0.7 Uncharacterized membrane protein compare
H281DRAFT_04899 +0.4 1.2 microcin C transport system ATP-binding protein compare
H281DRAFT_06429 +0.4 2.2 molybdenum-pterin binding domain-containing protein compare
H281DRAFT_06177 +0.4 2.0 hypothetical protein compare
H281DRAFT_06188 +0.4 1.9 Site-specific recombinase XerD compare
H281DRAFT_06474 +0.4 1.1 amino acid ABC transporter membrane protein 1, PAAT family compare
H281DRAFT_00368 +0.4 1.9 Pimeloyl-ACP methyl ester carboxylesterase compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source 4-Methyl-2-oxovaleric acid in Paraburkholderia bryophila 376MFSha3.1

For carbon source 4-Methyl-2-oxovaleric acid across organisms